mRNA_S-ischiensis_contig1.1003.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.1003.1
Unique NamemRNA_S-ischiensis_contig1.1003.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.1003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:6945371..6946683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size313
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815475.1572542-CDS-S-ischiensis_contig1:6945370..69455531622815475.1572542-CDS-S-ischiensis_contig1:6945370..6945553Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6945371..6945553 +
1695739722.9766026-CDS-S-ischiensis_contig1:6945370..69455531695739722.9766026-CDS-S-ischiensis_contig1:6945370..6945553Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6945371..6945553 +
1622815475.1749945-CDS-S-ischiensis_contig1:6946554..69466831622815475.1749945-CDS-S-ischiensis_contig1:6946554..6946683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6946555..6946683 +
1695739722.9897323-CDS-S-ischiensis_contig1:6946554..69466831695739722.9897323-CDS-S-ischiensis_contig1:6946554..6946683Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 6946555..6946683 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.1003.1prot_S-ischiensis_contig1.1003.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 6945371..6946683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.1003.1

>prot_S-ischiensis_contig1.1003.1 ID=prot_S-ischiensis_contig1.1003.1|Name=mRNA_S-ischiensis_contig1.1003.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=104bp
MYDEEEKLHVDEEEEEEGEKGEGQGQGGQLQAQGFDMLRRVLRRCASTRT
MSALSRAPYIQGMNFLAGFVMVVFYENARARGRVSPPKEQGWSWSGGKAT
HSAS
back to top

mRNA from alignment at S-ischiensis_contig1:6945371..6946683+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.1003.1 ID=mRNA_S-ischiensis_contig1.1003.1|Name=mRNA_S-ischiensis_contig1.1003.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1313bp|location=Sequence derived from alignment at S-ischiensis_contig1:6945371..6946683+ (Schizocladia ischiensis KU_0333)
ATGTATGACGAGGAGGAGAAGCTGCACGTAGACGAGGAGGAGGAGGAGGA
AGGGGAGAAAGGGGAGGGGCAGGGCCAGGGGGGGCAATTGCAAGCGCAGG
GTTTCGACATGCTGAGGCGTGTGCTACGCCGCTGCGCCTCCACCAGGACA
ATGAGCGCTCTCAGCAGGGCCCCCTACATTCAGGTGCTACAGTGGGCGGA
GACGGCCCACGAACTTTGCCCTGCGCCACTTTCTCGTGTCACCCGTATGA
GTACTTTGGTTGTACGTTTTCGTGCTCCGTCTCGATCGAGGCGCCGGGTC
AATGGTCTTGGGACTATGGCAAGCACAGCGTGAGCACATATAGAATTTTA
TATGTAGAGGGAGGGGACCTGCTCCGTCTCGAACGAGGCGCGGGGTCAAT
GGTCTCGGGACTACGGCAAGCACCACGTGAGTACATATATATATATATAT
ACGAGTATGTATACTTCGCGAAGTATGCACTCATGGGCTTTGGGTCCATG
ATGTGTGCTCCCACGCGCAGTACGCAGTATCGTTGGAAGTGCAAGTACTT
CGAAGTATCATGTCAGGTGCTTCCACGTGCCATTCGTGTACTGTCTGTCT
ACTGAGTACATCCCTGTGCAAATGGGTGCACTCGCCGTGTGCGATCACTG
TAATGCAATTTCAGGGGCGCACCCTTCCCTCGATTTTTTGTGTGTTTGTT
TGTTCGAGGGATGGGCGGCCCTCGCACGAAATACCCATCACTTGTACGAT
CACCGCTCTCCACACACACACACACACACACACACACACACTTTGTTGTT
GCAGTAGTCGTGGCGGACACCAAATGGCGCGCAGCATGCTCCAAATTCTC
CAAGTCTGGTTGCCAGAGATACTTTGACATTCCCGAGCCTTGATATGCGG
ACATGAGACGTGTGCACAACACCTTCCTCCTCCGCCACCTTTCCCTGCGC
AAGGCCGGCGGCTGCTTCCTCATTGGCCTCCCTGCGGCCATGCACCACAC
CACCACCACCGCCACCTCCTACACCACCACCACCGTTACCGCCGCCACCC
CCGCCCACAACCCACCGCTACCGCCACCACACCGCCCACAACCGCCACCA
CCACACCGCCGCCACCACCACCACCACCACCACCACCCCCACCGCCGCCA
CCACCACCACCCCACCGCACCGCACCGCCTGCAGGGCATGAACTTCCTCG
CGGGATTCGTGATGGTGGTCTTCTACGAGAACGCCAGGGCCCGGGGGAGG
GTGTCTCCTCCAAAGGAGCAGGGCTGGTCCTGGTCTGGGGGGAAGGCCAC
ACACTCGGCCAGC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig1:6945371..6946683+

>mRNA_S-ischiensis_contig1.1003.1 ID=mRNA_S-ischiensis_contig1.1003.1|Name=mRNA_S-ischiensis_contig1.1003.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=624bp|location=Sequence derived from alignment at S-ischiensis_contig1:6945371..6946683+ (Schizocladia ischiensis KU_0333)
ATGTATGACGAGGAGGAGAAGCTGCACGTAGACGAGGAGGAGGAGGAGGA
AGGGGAGAAAGGGGAGGGGCAGGGCCAGGGGGGGCAATTGCAAGCGCAGG
GTTTCGACATGCTGAGGCGTGTGCTACGCCGCTGCGCCTCCACCAGGACA
ATGAGCGCTCTCAGCAGGGCCCCCTACATTCAGATGTATGACGAGGAGGA
GAAGCTGCACGTAGACGAGGAGGAGGAGGAGGAAGGGGAGAAAGGGGAGG
GGCAGGGCCAGGGGGGGCAATTGCAAGCGCAGGGTTTCGACATGCTGAGG
CGTGTGCTACGCCGCTGCGCCTCCACCAGGACAATGAGCGCTCTCAGCAG
GGCCCCCTACATTCAGGGCATGAACTTCCTCGCGGGATTCGTGATGGTGG
TCTTCTACGAGAACGCCAGGGCCCGGGGGAGGGTGTCTCCTCCAAAGGAG
CAGGGCTGGTCCTGGTCTGGGGGGAAGGCCACACACTCGGCCAGCGGCAT
GAACTTCCTCGCGGGATTCGTGATGGTGGTCTTCTACGAGAACGCCAGGG
CCCGGGGGAGGGTGTCTCCTCCAAAGGAGCAGGGCTGGTCCTGGTCTGGG
GGGAAGGCCACACACTCGGCCAGC
back to top