mRNA_S-ischiensis_contig1.10.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig1.10.1
Unique NamemRNA_S-ischiensis_contig1.10.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig1.10.1 vs. uniprot
Match: W5V1C0_9MOLU (DNA (cytosine-5-)-methyltransferase n=1 Tax=Mesomycoplasma bovoculi M165/69 TaxID=743966 RepID=W5V1C0_9MOLU)

HSP 1 Score: 58.5 bits (140), Expect = 3.750e-5
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = 1 
Query:  436 KMAALFCGGGGFSVGLQQFS--RTKLVTDWGKAQLKVFKHN--HVALLLRDL--SKIE-ETVADLEECEIDGGTAGAPCQDWSPAG 672
            K+  LFCG GGFS+GL+Q S  +T L TDW K  L+ FKHN  H  ++L ++  SKI+ E V + ++  ++    G PCQ +S  G
Sbjct:    4 KILDLFCGAGGFSLGLEQNSEFKTVLATDWDKNALETFKHNFPHSKVILGNITDSKIKKELVLESKKLGVNMIIGGPPCQGFSNKG 89
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig1.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W5V1C0_9MOLU3.750e-543.02DNA (cytosine-5-)-methyltransferase n=1 Tax=Mesomy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig1contigS-ischiensis_contig1:76345..78558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size2214
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig1.10.1prot_S-ischiensis_contig1.10.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig1 76636..77073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815378.9378338-UTR-S-ischiensis_contig1:76344..766351622815378.9378338-UTR-S-ischiensis_contig1:76344..76635Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 76345..76635 +
1695739666.4285722-UTR-S-ischiensis_contig1:76344..766351695739666.4285722-UTR-S-ischiensis_contig1:76344..76635Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 76345..76635 +
1622815379.15728-UTR-S-ischiensis_contig1:77073..785581622815379.15728-UTR-S-ischiensis_contig1:77073..78558Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 77074..78558 +
1695739666.4487534-UTR-S-ischiensis_contig1:77073..785581695739666.4487534-UTR-S-ischiensis_contig1:77073..78558Schizocladia ischiensis KU_0333UTRS-ischiensis_contig1 77074..78558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815379.0038817-CDS-S-ischiensis_contig1:76635..770731622815379.0038817-CDS-S-ischiensis_contig1:76635..77073Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 76636..77073 +
1695739666.439982-CDS-S-ischiensis_contig1:76635..770731695739666.439982-CDS-S-ischiensis_contig1:76635..77073Schizocladia ischiensis KU_0333CDSS-ischiensis_contig1 76636..77073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig1.10.1

>prot_S-ischiensis_contig1.10.1 ID=prot_S-ischiensis_contig1.10.1|Name=mRNA_S-ischiensis_contig1.10.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=146bp
MVIGAGRALVGVGPGGTQGTWDTGTVIGEARTLDEPEDLQLDLKDERPKM
AALFCGGGGFSVGLQQFSRTKLVTDWGKAQLKVFKHNHVALLLRDLSKIE
ETVADLEECEIDGGTAGAPCQDWSPAGLGKEGKLAALTLTTVDMC*
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mRNA from alignment at S-ischiensis_contig1:76345..78558+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig1.10.1 ID=mRNA_S-ischiensis_contig1.10.1|Name=mRNA_S-ischiensis_contig1.10.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2214bp|location=Sequence derived from alignment at S-ischiensis_contig1:76345..78558+ (Schizocladia ischiensis KU_0333)
GAGATGGTGTACGCGCGGAAAGGCCGGGGCAAGAAGAGCACCCCATCCTG
CAAGCACTAGTGGAGCAGGAGAAGAAAATTTTAGTAATTAACGACGAGGA
GCCCACTACTGTAGTAAGTGCATCTGTATTCTAAAACGTCTGGCTAAGAG
TGCTAGCGAGGCAGTGGCCGTACTTTGTGAAGTAGTAGATCAACATTCCA
AGAGTCCAGTGACAGGCGGAACTACGTAGTATATGTTGGCGAGGGTTTAG
GTGCTGACGAGACCGGGAGGCTAAATAGTAGTAAACATACTATGGTAATA
GGAGCTGGGAGGGCCTTAGTGGGTGTCGGGCCAGGGGGCACACAGGGCAC
GTGGGACACGGGGACTGTAATAGGCGAGGCGAGAACCCTTGACGAGCCGG
AAGATCTCCAATTAGACCTCAAGGATGAGCGACCAAAGATGGCAGCCTTG
TTCTGTGGGGGAGGTGGTTTTTCGGTGGGCTTACAACAATTCTCGCGCAC
GAAATTGGTGACGGATTGGGGCAAAGCACAGTTAAAGGTTTTCAAGCACA
ACCACGTTGCACTACTGTTAAGAGATCTGAGTAAAATAGAAGAAACAGTG
GCAGACCTAGAAGAGTGTGAGATTGATGGGGGCACGGCCGGTGCACCATG
TCAAGACTGGTCGCCCGCAGGATTAGGAAAAGAAGGCAAGCTAGCAGCGC
TCACGTTAACCACTGTAGATATGTGCTAAAATATCGACTGGCTTGGTTTA
TATTTGAGAACGTATTACAGTGGGCAAGTAGTGACAACTTCCATCTCGCT
TGCAAATGCCTGAACAAGGGCGGATATAACATGACGGCAGTAGGGCTCAG
AGCCAGAGAGGCGGCTTTGGCATCGGCAGCCCCACCAGGCGGGACGCGGC
GGCGATGTTGAGCCCCTGAGCCTGCGCGAAGTTCCGCGGGTGTGTGTGCC
CCTTCTGCTCAGGGCCGCGGTACAGCCTCTCCCTCATCGTCGGTGCCGCG
AAGGGCCCATCCCCCTGCATGCTCTTCACCCGCCTGGCCCCCGTGCTGAG
GCCCCTCCACTGCTCCAACTCCCCTTTCACCTGCTCCCACGTGTCAAAGT
AGTTGTGCAGCTGGTCCATCCTTGTCGCCTGCGGCGGCAGCCCTCCCCCT
CGGCAGCTGTGCCTTGCTCCGCCCTTTTGGCCTGGATGACGTGCGCCAAG
ACCTCTGGGAATTGCTTGGTGAGTACATTCCCGACGACTTGGAACACCTC
GTGCTCCTCTGTCTCGGCGGGGGCCGTGCTTGCCACCCGGGCCCGGTCGA
TGGCCTGCGCTAAGGCCACCGTCACCGACCGGAGCTCCTCGCCGGGGTAT
CCCGAGAAGTGCAGGAGTGCCTCCTTCAGGTGCAGGATTGGACGGTCGTA
CAGGCACTCCGCCAGCTCACGCTGGAACTCCCGCCACAGCTCCCGCCCCT
GCAGCTTCCCGCCCTCTCACTTTGGCCACCTCCCGAACCCGGCTTTTTGC
GATAGTGTACCCCGCGGGCCGTGAGGAGAAGCACGAGCAGATCCTTAACG
AGTTCGCGAGACGCCGTTGTTGAGGCCCCACGTCTACGGTGAGAGCAGTG
TTCGGTAAGAAGGCGGGAGAGCGCTTCTGGTGGTTGCCTCGAAATAGGTG
GGCACCAGGTGTACGCTCTACCAAGGAACCGCTCCCCACAGTGTTGTGTG
TATCTTTGGCACCGCCTCCTGACCATTACGCAAGACGACCGGCAGACGTG
GGACCCTTGAACGGGGCTTACCGACGTGTTGAAGTTGCACGATTACCCGC
CGGACTACACCTTCCCAGGGGAGCCAGTGCGGGTAACTAAGCAGGTCAAC
ACCCCGAAATCAGAGATTGGACACGGAACCCTAGGTAGTATCGCGTCAGG
AGCAGTACTACCACCGATGGTGGAGCGAGTAGGAAGGAGCAGTAATGGAG
GCGTGCGGTTTGTTTACCAAGTGGCCGGCTGGGGGAGTGCCCTTTGAGAA
GGCAGGTACGACTCCCGCAGTCCGCGAGAAGGACGAAGAGCGCCTCCAGC
GCCATGCAGCCGAGGCAGAGCGCAGGAGGGCGGGAGAAGAAGAGGTGGGT
GGCAAGGGGGCGAAGGAGGCCTTGCCGGGATCGCGTCACGACCTGTCAGA
GGTGTGTGGCCGATCCAACGCGTCAGTTGCACTTGGGTCGGACTGGAAGT
GCCATACTGGGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig1:76345..78558+

>mRNA_S-ischiensis_contig1.10.1 ID=mRNA_S-ischiensis_contig1.10.1|Name=mRNA_S-ischiensis_contig1.10.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=876bp|location=Sequence derived from alignment at S-ischiensis_contig1:76345..78558+ (Schizocladia ischiensis KU_0333)
ATGGTAATAGGAGCTGGGAGGGCCTTAGTGGGTGTCGGGCCAGGGGGCAC
ACAGGGCACGTGGGACACGGGGACTGTAATAGGCGAGGCGAGAACCCTTG
ACGAGCCGGAAGATCTCCAATTAGACCTCAAGGATGAGCGACCAAAGATG
GCAGCCTTGTTCTGTGGGGGAGGTGGTTTTTCGGTGGGCTTACAACAATT
CTCGCGCACGAAATTGGTGACGGATTGGGGCAAAGCACAGTTAAAGGTTT
TCAAGCACAACCACGTTGCACTACTGTTAAGAGATCTGAGTAAAATAGAA
GAAACAGTGGCAGACCTAGAAGAGTGTGAGATTGATGGGGGCACGGCCGG
TGCACCATGTCAAGACTGGTCGCCCGCAGGATTAGGAAAAGAAGGCAAGC
TAGCAGCGCTCACGTTAACCACTGTAGATATGTGCTAAATGGTAATAGGA
GCTGGGAGGGCCTTAGTGGGTGTCGGGCCAGGGGGCACACAGGGCACGTG
GGACACGGGGACTGTAATAGGCGAGGCGAGAACCCTTGACGAGCCGGAAG
ATCTCCAATTAGACCTCAAGGATGAGCGACCAAAGATGGCAGCCTTGTTC
TGTGGGGGAGGTGGTTTTTCGGTGGGCTTACAACAATTCTCGCGCACGAA
ATTGGTGACGGATTGGGGCAAAGCACAGTTAAAGGTTTTCAAGCACAACC
ACGTTGCACTACTGTTAAGAGATCTGAGTAAAATAGAAGAAACAGTGGCA
GACCTAGAAGAGTGTGAGATTGATGGGGGCACGGCCGGTGCACCATGTCA
AGACTGGTCGCCCGCAGGATTAGGAAAAGAAGGCAAGCTAGCAGCGCTCA
CGTTAACCACTGTAGATATGTGCTAA
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