mRNA_S-dermatodea_contig107.481.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig107.481.1
Unique NamemRNA_S-dermatodea_contig107.481.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig107.481.1 vs. uniprot
Match: D7FSS9_ECTSI (UDENN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSS9_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 8.940e-6
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = -3 
Query:  644 DDFWKPFGDRVDDSSGGEEDDDGEPVPLPTSDEVRREREKEAAKGRSTSAKAELNAYYGGG 826
            D FWKPFG        G ED DGEPVPLPT++EVRRE     ++  ST A+ +L+AYYGGG
Sbjct: 1019 DAFWKPFG--------GGEDGDGEPVPLPTAEEVRRETAVTGSRSAST-ARRDLDAYYGGG 1070
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig107.481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSS9_ECTSI8.940e-655.74UDENN domain-containing protein n=2 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig107contigS-dermatodea_contig107:25019..25909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size891
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig107.481.1prot_S-dermatodea_contig107.481.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig107 25127..25588 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924169.3457685-UTR-S-dermatodea_contig107:25018..251261622924169.3457685-UTR-S-dermatodea_contig107:25018..25126Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig107 25019..25126 +
1694079065.163154-UTR-S-dermatodea_contig107:25018..251261694079065.163154-UTR-S-dermatodea_contig107:25018..25126Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig107 25019..25126 +
1622924169.364859-UTR-S-dermatodea_contig107:25588..259091622924169.364859-UTR-S-dermatodea_contig107:25588..25909Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig107 25589..25909 +
1694079065.1828837-UTR-S-dermatodea_contig107:25588..259091694079065.1828837-UTR-S-dermatodea_contig107:25588..25909Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig107 25589..25909 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924169.3541183-CDS-S-dermatodea_contig107:25126..255881622924169.3541183-CDS-S-dermatodea_contig107:25126..25588Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 25127..25588 +
1694079065.1739113-CDS-S-dermatodea_contig107:25126..255881694079065.1739113-CDS-S-dermatodea_contig107:25126..25588Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig107 25127..25588 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig107.481.1

>prot_S-dermatodea_contig107.481.1 ID=prot_S-dermatodea_contig107.481.1|Name=mRNA_S-dermatodea_contig107.481.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=154bp
MEHRSFTGRLSRLQNIAAAEQWILKHSSQATPCHSTVHRRSKNAHFYSKL
SMPRAYISPDAVPPKTKAMTQNNQCNEHASVRYTHSYRQTCKESGGRHDR
KKSVTVVSNRKKPPHSELRGLKPPRRNPTVDRFQTRYLQRPAVSIRRYTQ
TVQ*
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mRNA from alignment at S-dermatodea_contig107:25019..25909+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig107.481.1 ID=mRNA_S-dermatodea_contig107.481.1|Name=mRNA_S-dermatodea_contig107.481.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=891bp|location=Sequence derived from alignment at S-dermatodea_contig107:25019..25909+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGCACGTGGCCATCGGTAATCATCAGAGGTGTCACGCAGGAACCATCTC
TCGCGGGTTGGTATTTCGATGGCTGCAGAAAGGCCAAAGTGGAGATACTA
TAATATACATGGAACACCGTTCGTTTACTGGCCGTCTTTCAAGACTACAG
AATATCGCAGCAGCCGAGCAGTGGATTTTAAAGCACAGTAGCCAAGCAAC
TCCTTGCCACTCAACAGTCCACAGGCGGAGCAAAAACGCACACTTCTACA
GTAAGTTAAGTATGCCTCGGGCGTACATATCGCCAGACGCCGTACCGCCA
AAAACCAAGGCAATGACGCAAAACAACCAGTGCAACGAACACGCCTCCGT
CAGATATACGCATTCATACCGGCAAACTTGTAAAGAGAGCGGGGGACGTC
ACGATCGGAAGAAGTCCGTTACTGTCGTTTCCAATAGAAAGAAACCTCCA
CACAGTGAGCTTCGCGGGCTGAAACCTCCAAGACGCAACCCTACTGTGGA
CAGATTTCAAACTAGGTACTTGCAGCGGCCGGCCGTGTCCATACGACGAT
ACACCCAAACCGTTCAGTAGCGCACGACAAAACCGTAGACTTGGTCAATA
TTCCTATCCAATCCACGCAGTGAATAGTCATCCAAAGTTATCTCCCGCCA
CCGTAATACGCATTGAGCTCCGCCTTGGCCGACGTGGAGCGTCCCTTTGC
CGCCTCCTTTTCTCTTTCTCTTCGAACCTCATCCGAAGTTGGCAGCGGCA
CCGGTTCGCCATCGTCGTCCTCTTCCCCGCCGCTGCTGTCATCCACCCGG
TCTCCGAACGGTTTCCAAAAGTCATCGTCGCCTTCGCCGCCAGCGCTAGC
ACGGGCTTTCGCAGCCGCGGCCCTCACCCTGTCGCCACCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig107:25019..25909+

>mRNA_S-dermatodea_contig107.481.1 ID=mRNA_S-dermatodea_contig107.481.1|Name=mRNA_S-dermatodea_contig107.481.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at S-dermatodea_contig107:25019..25909+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGAACACCGTTCGTTTACTGGCCGTCTTTCAAGACTACAGAATATCGC
AGCAGCCGAGCAGTGGATTTTAAAGCACAGTAGCCAAGCAACTCCTTGCC
ACTCAACAGTCCACAGGCGGAGCAAAAACGCACACTTCTACAGTAAGTTA
AGTATGCCTCGGGCGTACATATCGCCAGACGCCGTACCGCCAAAAACCAA
GGCAATGACGCAAAACAACCAGTGCAACGAACACGCCTCCGTCAGATATA
CGCATTCATACCGGCAAACTTGTAAAGAGAGCGGGGGACGTCACGATCGG
AAGAAGTCCGTTACTGTCGTTTCCAATAGAAAGAAACCTCCACACAGTGA
GCTTCGCGGGCTGAAACCTCCAAGACGCAACCCTACTGTGGACAGATTTC
AAACTAGGTACTTGCAGCGGCCGGCCGTGTCCATACGACGATACACCCAA
ACCGTTCAGTAGATGGAACACCGTTCGTTTACTGGCCGTCTTTCAAGACT
ACAGAATATCGCAGCAGCCGAGCAGTGGATTTTAAAGCACAGTAGCCAAG
CAACTCCTTGCCACTCAACAGTCCACAGGCGGAGCAAAAACGCACACTTC
TACAGTAAGTTAAGTATGCCTCGGGCGTACATATCGCCAGACGCCGTACC
GCCAAAAACCAAGGCAATGACGCAAAACAACCAGTGCAACGAACACGCCT
CCGTCAGATATACGCATTCATACCGGCAAACTTGTAAAGAGAGCGGGGGA
CGTCACGATCGGAAGAAGTCCGTTACTGTCGTTTCCAATAGAAAGAAACC
TCCACACAGTGAGCTTCGCGGGCTGAAACCTCCAAGACGCAACCCTACTG
TGGACAGATTTCAAACTAGGTACTTGCAGCGGCCGGCCGTGTCCATACGA
CGATACACCCAAACCGTTCAGTAG
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