mRNA_S-dermatodea_contig10588.411.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10588.411.1
Unique NamemRNA_S-dermatodea_contig10588.411.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Match: D7FVD8_ECTSI (Tousled-like protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVD8_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 2.360e-30
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMCNLPYLATPAAKRG 189
            QEKILREKVIVNANRVDFP KPVVSEEAK+FIRSCLTYTHATRPDV AMCNLPYL TPAA+RG
Sbjct:  876 QEKILREKVIVNANRVDFPPKPVVSEEAKSFIRSCLTYTHATRPDVHAMCNLPYLTTPAARRG 938
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BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Match: A0A6H5JDQ4_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ4_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.360e-30
Identity = 58/63 (92.06%), Postives = 60/63 (95.24%), Query Frame = 1 
Query:    1 QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMCNLPYLATPAAKRG 189
            QEKILREKVIVNANRVDFP KPVVSEEAK+FIRSCLTYTHATRPDV AMCNLPYL TPAA+RG
Sbjct:  888 QEKILREKVIVNANRVDFPPKPVVSEEAKSFIRSCLTYTHATRPDVHAMCNLPYLTTPAARRG 950
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BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Match: A0A0A9IVG4_ARUDO (TLK2 n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9IVG4_ARUDO)

HSP 1 Score: 72.4 bits (176), Expect = 6.470e-15
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMCNLPYLA 168
            QE+ILRE  I+NA RV+FPSKP VS EAK  IR CLTY  + RPDV A+   PYL+
Sbjct:   56 QERILREDTIINARRVEFPSKPSVSNEAKDLIRRCLTYNQSERPDVLAIAQDPYLS 111
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BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Match: A0A446TFD9_TRITD (Protein kinase domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446TFD9_TRITD)

HSP 1 Score: 70.9 bits (172), Expect = 1.280e-14
Identity = 33/56 (58.93%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMCNLPYLA 168
            QE+ILRE  I+NA +V+FPSKP VS EAK  IR CLTY  + RPDV ++   PYL+
Sbjct:   28 QERILREDTIINARKVEFPSKPTVSNEAKELIRRCLTYNQSERPDVLSIAQDPYLS 83
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BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Match: UPI000901053D (serine/threonine-protein kinase TOUSLED isoform X1 n=3 Tax=Ipomoea TaxID=4119 RepID=UPI000901053D)

HSP 1 Score: 73.2 bits (178), Expect = 1.380e-13
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 1 
Query:    1 QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMCNLPYLATP 174
            QE+ILRE  I+ A +V+FPS+P +S EAK FIR CLTY  A RPDV A+   PYL  P
Sbjct:  593 QERILREDTIIKARKVEFPSRPAISSEAKEFIRRCLTYNQAERPDVLAIAQDPYLTFP 650
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BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Match: UPI000C1D3F2C (serine/threonine-protein kinase TOUSLED n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D3F2C)

HSP 1 Score: 72.8 bits (177), Expect = 1.890e-13
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMCNLPYLA 168
            QEKILRE  I+ A +VDFPS+P VS EAK FIR CLTY+ A RPDV  +   PYL+
Sbjct:  616 QEKILREDTIIKARKVDFPSRPSVSNEAKDFIRRCLTYSQAERPDVLTVAQDPYLS 671
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BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Match: A0A833QFY2_9POAL (Serine/threonine-protein kinase TOUSLED n=1 Tax=Carex littledalei TaxID=544730 RepID=A0A833QFY2_9POAL)

HSP 1 Score: 72.8 bits (177), Expect = 1.890e-13
Identity = 35/55 (63.64%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMCNLPYL 165
            QE+ILRE  I+NA RV+FPSKP VS EAK  IR CLTY  A RPDV  +   PYL
Sbjct:  624 QERILREDTIINARRVEFPSKPAVSNEAKELIRKCLTYNQAERPDVLTIAQDPYL 678
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BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Match: A0A0L9UVE6_PHAAN (Protein kinase domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9UVE6_PHAAN)

HSP 1 Score: 72.4 bits (176), Expect = 2.590e-13
Identity = 34/55 (61.82%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMCNLPYL 165
            QE+ILRE  I+ A +VDFPSKP +S EAK FIR CLTY  A RPDV  +   PYL
Sbjct:  620 QERILREDTIIKARKVDFPSKPTISNEAKDFIRRCLTYNQAERPDVLTIAQDPYL 674
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BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Match: A0A7N2KMW7_QUELO (Protein kinase domain-containing protein n=1 Tax=Quercus lobata TaxID=97700 RepID=A0A7N2KMW7_QUELO)

HSP 1 Score: 69.3 bits (168), Expect = 3.230e-13
Identity = 33/55 (60.00%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMCNLPYL 165
            QE+ILRE  I+ A +V+FPS+P VS EAK  IR CLTY  A RPDV A+   PYL
Sbjct:  106 QERILREDTIIKARKVEFPSRPAVSNEAKELIRRCLTYNQADRPDVLAIAQDPYL 160
[Close]
BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Match: K4A6P0_SETIT (Protein kinase domain-containing protein n=31 Tax=Poaceae TaxID=4479 RepID=K4A6P0_SETIT)

HSP 1 Score: 72.0 bits (175), Expect = 3.530e-13
Identity = 34/56 (60.71%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    1 QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMCNLPYLA 168
            QE+ILRE  I+NA RV+FPSKP VS EAK  IR CLTY  + RPDV  +   PYL+
Sbjct:  617 QERILREDTIINARRVEFPSKPAVSNEAKDLIRRCLTYNQSERPDVLTIAQEPYLS 672
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10588.411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVD8_ECTSI2.360e-3092.06Tousled-like protein kinase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JDQ4_9PHAE2.360e-3092.06Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A0A9IVG4_ARUDO6.470e-1562.50TLK2 n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9... [more]
A0A446TFD9_TRITD1.280e-1458.93Protein kinase domain-containing protein n=1 Tax=T... [more]
UPI000901053D1.380e-1358.62serine/threonine-protein kinase TOUSLED isoform X1... [more]
UPI000C1D3F2C1.890e-1362.50serine/threonine-protein kinase TOUSLED n=1 Tax=Ol... [more]
A0A833QFY2_9POAL1.890e-1363.64Serine/threonine-protein kinase TOUSLED n=1 Tax=Ca... [more]
A0A0L9UVE6_PHAAN2.590e-1361.82Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A7N2KMW7_QUELO3.230e-1360.00Protein kinase domain-containing protein n=1 Tax=Q... [more]
K4A6P0_SETIT3.530e-1360.71Protein kinase domain-containing protein n=31 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10588contigS-dermatodea_contig10588:7157..7351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue9.6e-26
Seed eggNOG ortholog2880.D7FVD8
Preferred nameTLK2
KEGG koko:K08864
GOsGO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009507,GO:0009536,GO:0009987,GO:0010468,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019222,GO:0019538,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0050789,GO:0050794,GO:0060147,GO:0060255,GO:0060966,GO:0060968,GO:0065007,GO:0071704,GO:0140096,GO:1900368,GO:1901564
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG1151@1,KOG1151@2759
EC2.7.11.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTousled-like protein kinase
Ec32 orthologEc-14_000740.2
Exons1
Model size195
Cds size195
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924164.3225896-CDS-S-dermatodea_contig10588:7156..73511622924164.3225896-CDS-S-dermatodea_contig10588:7156..7351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10588 7157..7351 -
1694079061.633183-CDS-S-dermatodea_contig10588:7156..73511694079061.633183-CDS-S-dermatodea_contig10588:7156..7351Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10588 7157..7351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10588.411.1prot_S-dermatodea_contig10588.411.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10588 7157..7351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10588.411.1

>prot_S-dermatodea_contig10588.411.1 ID=prot_S-dermatodea_contig10588.411.1|Name=mRNA_S-dermatodea_contig10588.411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=65bp
QEKILREKVIVNANRVDFPSKPVVSEEAKTFIRSCLTYTHATRPDVRAMC
NLPYLATPAAKRGA*
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mRNA from alignment at S-dermatodea_contig10588:7157..7351-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10588.411.1 ID=mRNA_S-dermatodea_contig10588.411.1|Name=mRNA_S-dermatodea_contig10588.411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at S-dermatodea_contig10588:7157..7351- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGAAAATCCTTCGGGAAAAAGTAATCGTCAACGCGAACCGCGTGGA
TTTCCCGTCCAAGCCGGTGGTCTCGGAGGAGGCGAAGACCTTCATTCGCT
CGTGTCTCACCTACACTCACGCCACTCGTCCAGACGTGCGCGCCATGTGC
AACCTTCCGTACCTTGCAACGCCAGCGGCGAAACGCGGCGCGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10588:7157..7351-

>mRNA_S-dermatodea_contig10588.411.1 ID=mRNA_S-dermatodea_contig10588.411.1|Name=mRNA_S-dermatodea_contig10588.411.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at S-dermatodea_contig10588:7157..7351- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGAAAATCCTTCGGGAAAAAGTAATCGTCAACGCGAACCGCGTGGA
TTTCCCGTCCAAGCCGGTGGTCTCGGAGGAGGCGAAGACCTTCATTCGCT
CGTGTCTCACCTACACTCACGCCACTCGTCCAGACGTGCGCGCCATGTGC
AACCTTCCGTACCTTGCAACGCCAGCGGCGAAACGCGGCGCGTGACAGGA
GAAAATCCTTCGGGAAAAAGTAATCGTCAACGCGAACCGCGTGGATTTCC
CGTCCAAGCCGGTGGTCTCGGAGGAGGCGAAGACCTTCATTCGCTCGTGT
CTCACCTACACTCACGCCACTCGTCCAGACGTGCGCGCCATGTGCAACCT
TCCGTACCTTGCAACGCCAGCGGCGAAACGCGGCGCGTGA
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