mRNA_S-dermatodea_contig10578.403.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10578.403.1
Unique NamemRNA_S-dermatodea_contig10578.403.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10578.403.1 vs. uniprot
Match: A0A6H5KTE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTE2_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.540e-18
Identity = 85/198 (42.93%), Postives = 108/198 (54.55%), Query Frame = -2 
Query:   41 MSTASPGWRRRRDVKTQDREKSLSPLDKDQLKERCLARVRSERRRQMARVRQRRDFAGEALAE-SSASPDVTMPLELGEEGGSSLSQGGF--LSYAKDILRHGLNDIAG-----EKRQSREHSHPNEQAARLG-QDREPSSPHANANGDAQDVTAHHDR----------GGPLSLM---AIEEETA-YLNACAPRGQG 565
            M++A P  RRRRDVK+ DREKS+SPLDKDQLK RCL RVR+ER R MAR+R R+    EA      A  +   PL      G +LS  G   LS A++ILR GL++++G      KR+ ++H   N +   LG ++   S    ++NG                     GG  SL    AIEEE A YLNACA RGQG
Sbjct:    1 MTSAEP--RRRRDVKSLDREKSMSPLDKDQLKRRCLERVRTERSRLMARMRGRKGTEEEARQLFGHAGGNSGSPLTAAAAQGENLSSPGHHSLSSAREILREGLSELSGGNGDTNKRRRQQHHPTNHERTALGCEEFGASLTRLDSNGXXXXXXXXXXXXXXXXXXXHAGGSESLSFLSAIEEENASYLNACA-RGQG 195
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10578.403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KTE2_9PHAE6.540e-1842.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10578contigS-dermatodea_contig10578:2873..3507 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size637
Cds size381
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924163.8541312-UTR-S-dermatodea_contig10578:2872..31261622924163.8541312-UTR-S-dermatodea_contig10578:2872..3126Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10578 2873..3126 +
1694079061.344658-UTR-S-dermatodea_contig10578:2872..31261694079061.344658-UTR-S-dermatodea_contig10578:2872..3126Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10578 2873..3126 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924163.8628647-CDS-S-dermatodea_contig10578:3126..35071622924163.8628647-CDS-S-dermatodea_contig10578:3126..3507Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10578 3127..3507 +
1694079061.3594406-CDS-S-dermatodea_contig10578:3126..35071694079061.3594406-CDS-S-dermatodea_contig10578:3126..3507Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10578 3127..3507 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10578.403.1prot_S-dermatodea_contig10578.403.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10578 3127..3507 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10578.403.1

>prot_S-dermatodea_contig10578.403.1 ID=prot_S-dermatodea_contig10578.403.1|Name=mRNA_S-dermatodea_contig10578.403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=127bp
MSFKPCLSISFAYERKPPCDSELPPSSPSSRGIVTSGEAEDSASASPAKS
RRCRTLAIWRRLSLRTLARHRSLSWSLSSGDRLFSRSCVFTSRLRLHPGD
AVDIASPSWALVRLSSAAASPPAAPNT
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mRNA from alignment at S-dermatodea_contig10578:2873..3507+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10578.403.1 ID=mRNA_S-dermatodea_contig10578.403.1|Name=mRNA_S-dermatodea_contig10578.403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=635bp|location=Sequence derived from alignment at S-dermatodea_contig10578:2873..3507+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGCGACCCCTCCAAACGTCTTGGCGACGGGCGGCGTCGGCCCTGCCCC
CTGGGGGCGCACGCGTTCAAGTAGGCTGTCTCTTCTTCAATAGCCATGAG
CGACAACGGACCACCCCGGTCGTGGTGTGCTGTGACGTCCTGTGCGTCCC
CGTTTGCGTTCGCGTGCGGGGAGCTGGGTTCTCTGTCCTGGCCCAACCGA
GCGGCTTGCTCGTTGGGGTGAGAGTGCTCGCGAGACTGTCGTTTTTCTCC
TGCGATGTCGTTCAAGCCATGCCTGAGTATATCCTTCGCGTACGAGAGGA
AGCCGCCCTGTGACAGCGAACTGCCTCCCTCTTCACCGAGTTCGAGGGGC
ATCGTTACGTCAGGAGAGGCCGAAGATTCGGCGAGCGCCTCACCCGCAAA
GTCCCGGCGCTGTCGAACCCTGGCCATCTGGCGGCGTCTTTCGCTCCGGA
CTCTGGCGAGGCATCGCTCCTTGAGCTGGTCCTTGTCGAGCGGAGACAGG
CTCTTTTCTCGGTCTTGCGTTTTCACGTCTCGTCTCCGTCTCCACCCCGG
CGACGCTGTGGACATCGCTTCTCCTTCCTGGGCGTTGGTAAGGCTGTCCT
CTGCTGCAGCTTCGCCACCAGCCGCTCCAAACACA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10578:2873..3507+

>mRNA_S-dermatodea_contig10578.403.1 ID=mRNA_S-dermatodea_contig10578.403.1|Name=mRNA_S-dermatodea_contig10578.403.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at S-dermatodea_contig10578:2873..3507+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTCGTTCAAGCCATGCCTGAGTATATCCTTCGCGTACGAGAGGAAGCC
GCCCTGTGACAGCGAACTGCCTCCCTCTTCACCGAGTTCGAGGGGCATCG
TTACGTCAGGAGAGGCCGAAGATTCGGCGAGCGCCTCACCCGCAAAGTCC
CGGCGCTGTCGAACCCTGGCCATCTGGCGGCGTCTTTCGCTCCGGACTCT
GGCGAGGCATCGCTCCTTGAGCTGGTCCTTGTCGAGCGGAGACAGGCTCT
TTTCTCGGTCTTGCGTTTTCACGTCTCGTCTCCGTCTCCACCCCGGCGAC
GCTGTGGACATCGCTTCTCCTTCCTGGGCGTTGGTAAGGCTGTCCTCTGC
TGCAGCTTCGCCACCAGCCGCTCCAAACACAATGTCGTTCAAGCCATGCC
TGAGTATATCCTTCGCGTACGAGAGGAAGCCGCCCTGTGACAGCGAACTG
CCTCCCTCTTCACCGAGTTCGAGGGGCATCGTTACGTCAGGAGAGGCCGA
AGATTCGGCGAGCGCCTCACCCGCAAAGTCCCGGCGCTGTCGAACCCTGG
CCATCTGGCGGCGTCTTTCGCTCCGGACTCTGGCGAGGCATCGCTCCTTG
AGCTGGTCCTTGTCGAGCGGAGACAGGCTCTTTTCTCGGTCTTGCGTTTT
CACGTCTCGTCTCCGTCTCCACCCCGGCGACGCTGTGGACATCGCTTCTC
CTTCCTGGGCGTTGGTAAGGCTGTCCTCTGCTGCAGCTTCGCCACCAGCC
GCTCCAAACACA
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