mRNA_S-dermatodea_contig10555.387.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10555.387.1
Unique NamemRNA_S-dermatodea_contig10555.387.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10555.387.1 vs. uniprot
Match: D8LRW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRW3_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.190e-26
Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 RSHGRSHVLHETLRGFVQRKDVSVMAKALPAHVKKEEIVLIVALTKEQKALTQMIFREAKRVYSRQGMLMKVLSSLQLVWTHPLVFEADHARKTAQA 291
            RSHGRSHVLH+TL GFVQRKDV+VMAKALP  V KEEIVL V L+ EQ+ LT+ IFREA+    ++GML++++  LQL+WTHPLV+E + A K A+A
Sbjct: 2051 RSHGRSHVLHQTLMGFVQRKDVTVMAKALPKDVVKEEIVLNVNLSDEQQRLTRKIFREARLNGPKRGMLLRLIMPLQLLWTHPLVYEEEEAGKLARA 2147
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BLAST of mRNA_S-dermatodea_contig10555.387.1 vs. uniprot
Match: A0A6H5KF11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF11_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.220e-26
Identity = 61/97 (62.89%), Postives = 78/97 (80.41%), Query Frame = 1 
Query:    1 RSHGRSHVLHETLRGFVQRKDVSVMAKALPAHVKKEEIVLIVALTKEQKALTQMIFREAKRVYSRQGMLMKVLSSLQLVWTHPLVFEADHARKTAQA 291
            RSHGRSHVLH+TL GFVQRKD++VMAKALP  V KEEIVL V L+ EQ+ LT+ IFREA+    ++GML++++  LQL+WTHPLV+E + A K A+A
Sbjct: 1931 RSHGRSHVLHQTLMGFVQRKDLTVMAKALPKDVVKEEIVLNVNLSDEQQKLTRKIFREARLNGPKRGMLLRLIMPLQLLWTHPLVYEEEEAAKLARA 2027
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10555.387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRW3_ECTSI1.190e-2663.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF11_9PHAE2.220e-2662.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10555contigS-dermatodea_contig10555:3378..5341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue4.6e-24
Seed eggNOG ortholog2880.D8LRW3
KEGG koko:K06767,ko:K10779,ko:K10875,ko:K10876
KEGG Pathwayko03440,map03440
EggNOG free text desc.ATP binding
EggNOG OGsCOG0553@1,KOG1015@2759,KOG1016@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03036,ko03400,ko04516
Hectar predicted targeting categoryother localisation
Exons3
Model size653
Cds size651
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10555.387.1prot_S-dermatodea_contig10555.387.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10555 3378..5341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924162.9325094-CDS-S-dermatodea_contig10555:3377..36501622924162.9325094-CDS-S-dermatodea_contig10555:3377..3650Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10555 3378..3650 -
1694079060.760361-CDS-S-dermatodea_contig10555:3377..36501694079060.760361-CDS-S-dermatodea_contig10555:3377..3650Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10555 3378..3650 -
1622924162.9434702-CDS-S-dermatodea_contig10555:4156..43551622924162.9434702-CDS-S-dermatodea_contig10555:4156..4355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10555 4157..4355 -
1694079060.7713282-CDS-S-dermatodea_contig10555:4156..43551694079060.7713282-CDS-S-dermatodea_contig10555:4156..4355Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10555 4157..4355 -
1622924162.9535394-CDS-S-dermatodea_contig10555:5162..53411622924162.9535394-CDS-S-dermatodea_contig10555:5162..5341Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10555 5163..5341 -
1694079060.7803447-CDS-S-dermatodea_contig10555:5162..53411694079060.7803447-CDS-S-dermatodea_contig10555:5162..5341Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10555 5163..5341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10555.387.1

>prot_S-dermatodea_contig10555.387.1 ID=prot_S-dermatodea_contig10555.387.1|Name=mRNA_S-dermatodea_contig10555.387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=217bp
RSHGRSHVLHETLRGFVQRKDVSVMAKALPAHVKKEEIVLIVALTKEQKA
LTQMIFREAKRVYSRQGMLMKVLSSLQLVWTHPLVFEADHARKTAQAEAE
ALAAAELARSDDDVSESVVVSDSSDDSDSSPDRYRKKNKPTGDGATPSVP
LACRTHSIDVDGAMTVPSAPERASSDSRGPRGEDPVGGVVGRDGVAVPNC
SDSGVNVAQDLMAVDQA
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mRNA from alignment at S-dermatodea_contig10555:3378..5341-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10555.387.1 ID=mRNA_S-dermatodea_contig10555.387.1|Name=mRNA_S-dermatodea_contig10555.387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1964bp|location=Sequence derived from alignment at S-dermatodea_contig10555:3378..5341- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGAGCCACGGGCGGTCCCACGTGCTTCACGAAACTCTGCGCGGCTTCGT
TCAGCGCAAGGACGTGTCCGTTATGGCGAAAGCTCTACCCGCCCACGTGA
AAAAGGAGGAGATCGTGCTGATCGTGGCCCTCACCAAGGAGCAGAAGGCC
CTGACCCAGATGATTTTCCGGGAGGCAAAGTGAGTTGAAAGGGGGAATGG
TGGCTGCATTGCTTTTGTCGAGCACTGCAGGAGCTTCATGTGTGTGTGTG
CACGAGGCGTTGGTTGTGACTTGCTTGTTCCAGGATACATATTGTACACC
TTTGCAGCCAAACTTTTGCGAGTAGGGAAACGTTTTAAAGGCGGAGATTG
TAGTGTCCTATCATAATTGTAGTGTCAGTGTACGTGTAATTTGGGGCAGG
GGTATACAATCAGGTTCACAGTCTTACACTTGTGTACTTTTTTAATCCCG
TACAATCATACATTGCGCCCCGTGGTTAAACTGGTGACCAACAGCCCAGT
AAGCGGAGGACCGGGGTTCGAATCCCGGCAGAGTGATAANNNNNNNNNNG
ACCACAGATGGACCTCGGAAAAGAAAGTCTATCATATGTGTGCCAAAAAA
TAAAATAAAATAAAATCACTGATTGTACGTATACTACACGCGCATTTTTG
AAAACAGTACAGCCAGGTACAACTAGAATTCGCTGCTGTACACTGTTGTA
CACTCGTAAAGTGCACCGGTTACACGTGTACAAGCAGTAGTACACTTACA
ACCTCCACCTTTTCAAAAGTAGACAAGTAGCGTGGTGTTTCCCCTCGACC
ACGAAATAAACCGGAACGTTTTATAATCAACGCCGGACAACTTACCATTC
ACCTTGAAAACGCTATCATACGTTTATCCTTGTTGGTGAGAAACGTAAGA
CCATTATTTTCACGCTGCGATTGCGAAGCCGAAGATATCATGCGTTCGTC
TCTTCGTTCCGAACCGCACCCTGACCCCCTCCCAAGGCGCGTGTACTCGA
GGCAAGGGATGCTGATGAAAGTCCTGTCCAGCCTGCAGCTGGTGTGGACA
CACCCGCTGGTATTCGAGGCCGACCATGCGAGAAAGACCGCCCAAGCGGA
GGCAGAAGCTCTAGCGGCAGCTGAACTGGCGAGGAGCGACGACGACGTTA
GCGAGAGCGTGGTTGTCTCTGATTCGTCGGATGATGTAAGAAAGCATTTC
GGCGTTGATGGGGGTGGGGGTTGCGAATGGGTTTTGGGGCATCCCTTTTT
GCTGTTGCTGCGTGTCTAACGCGGGATGGGGCGTGGTGTTGACTTTTGGT
ATCCGCAGACCAATCCTATGACGACGGCTGTACAGACTAGCAGACGGTCT
TGCTACACGTCACCCAATTTTTGTTGTGTGATACCGTCATGTTCGTTCCT
GCGTTGGACTATTCCTGCGTTGTTGAGGGCAAGGAGGACTTCGCGCTTTC
TGCACGTCTCGAGTGTTGTTCCACAGCACTGGCGGTGCCCTCGGCGAAGG
GCTTGGCCTTCTCACTCTCAAACGTCACGCCCCCTTTGCCTCCGTTTTTG
GTATACTGACCTGACGTTGGGGGAGGGGAGTAAAATGTCGAGTCGTTGTT
TCCTGAGCTCTCCTTTGTAACAAATCGCTTTCATGTACCCGCTTTCCCCT
TGGACGCCGCCACCCTCTCCTGTCTTTCCTCCCGGCGCCAGTCTGACAGT
AGCCCGGACCGATACAGAAAGAAGAACAAACCGACCGGAGATGGTGCGAC
CCCATCGGTACCGTTAGCTTGTCGTACCCATTCCATCGATGTTGACGGCG
CAATGACAGTCCCCTCCGCTCCCGAGCGTGCGTCCTCCGACTCCCGTGGA
CCCCGCGGCGAGGATCCAGTTGGTGGCGTCGTTGGTCGAGATGGTGTTGC
AGTGCCCAACTGTAGCGACAGCGGAGTAAACGTAGCGCAGGACCTAATGG
CGGTCGATCAGGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10555:3378..5341-

>mRNA_S-dermatodea_contig10555.387.1 ID=mRNA_S-dermatodea_contig10555.387.1|Name=mRNA_S-dermatodea_contig10555.387.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1302bp|location=Sequence derived from alignment at S-dermatodea_contig10555:3378..5341- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGAGCCACGGGCGGTCCCACGTGCTTCACGAAACTCTGCGCGGCTTCGT
TCAGCGCAAGGACGTGTCCGTTATGGCGAAAGCTCTACCCGCCCACGTGA
AAAAGGAGGAGATCGTGCTGATCGTGGCCCTCACCAAGGAGCAGAAGGCC
CTGACCCAGATGATTTTCCGGGAGGCAAAAGGAGCCACGGGCGGTCCCAC
GTGCTTCACGAAACTCTGCGCGGCTTCGTTCAGCGCAAGGACGTGTCCGT
TATGGCGAAAGCTCTACCCGCCCACGTGAAAAAGGAGGAGATCGTGCTGA
TCGTGGCCCTCACCAAGGAGCAGAAGGCCCTGACCCAGATGATTTTCCGG
GAGGCAAAGCGCGTGTACTCGAGGCAAGGGATGCTGATGAAAGTCCTGTC
CAGCCTGCAGCTGGTGTGGACACACCCGCTGGTATTCGAGGCCGACCATG
CGAGAAAGACCGCCCAAGCGGAGGCAGAAGCTCTAGCGGCAGCTGAACTG
GCGAGGAGCGACGACGACGTTAGCGAGAGCGTGGTTGTCTCTGATTCGTC
GGATGATGCGCGTGTACTCGAGGCAAGGGATGCTGATGAAAGTCCTGTCC
AGCCTGCAGCTGGTGTGGACACACCCGCTGGTATTCGAGGCCGACCATGC
GAGAAAGACCGCCCAAGCGGAGGCAGAAGCTCTAGCGGCAGCTGAACTGG
CGAGGAGCGACGACGACGTTAGCGAGAGCGTGGTTGTCTCTGATTCGTCG
GATGATTCTGACAGTAGCCCGGACCGATACAGAAAGAAGAACAAACCGAC
CGGAGATGGTGCGACCCCATCGGTACCGTTAGCTTGTCGTACCCATTCCA
TCGATGTTGACGGCGCAATGACAGTCCCCTCCGCTCCCGAGCGTGCGTCC
TCCGACTCCCGTGGACCCCGCGGCGAGGATCCAGTTGGTGGCGTCGTTGG
TCGAGATGGTGTTGCAGTGCCCAACTGTAGCGACAGCGGAGTAAACGTAG
CGCAGGACCTAATGGCGGTCGATCAGGCCTCTGACAGTAGCCCGGACCGA
TACAGAAAGAAGAACAAACCGACCGGAGATGGTGCGACCCCATCGGTACC
GTTAGCTTGTCGTACCCATTCCATCGATGTTGACGGCGCAATGACAGTCC
CCTCCGCTCCCGAGCGTGCGTCCTCCGACTCCCGTGGACCCCGCGGCGAG
GATCCAGTTGGTGGCGTCGTTGGTCGAGATGGTGTTGCAGTGCCCAACTG
TAGCGACAGCGGAGTAAACGTAGCGCAGGACCTAATGGCGGTCGATCAGG
CC
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