mRNA_S-dermatodea_contig10532.373.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10532.373.1
Unique NamemRNA_S-dermatodea_contig10532.373.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10532.373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10532contigS-dermatodea_contig10532:4906..6128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_002670.1
Exons1
Model size1223
Cds size333
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10532.373.1prot_S-dermatodea_contig10532.373.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10532 5216..5548 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924161.8499057-UTR-S-dermatodea_contig10532:4905..52151622924161.8499057-UTR-S-dermatodea_contig10532:4905..5215Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10532 4906..5215 +
1694079060.0121233-UTR-S-dermatodea_contig10532:4905..52151694079060.0121233-UTR-S-dermatodea_contig10532:4905..5215Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10532 4906..5215 +
1622924161.871974-UTR-S-dermatodea_contig10532:5548..61281622924161.871974-UTR-S-dermatodea_contig10532:5548..6128Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10532 5549..6128 +
1694079060.0298011-UTR-S-dermatodea_contig10532:5548..61281694079060.0298011-UTR-S-dermatodea_contig10532:5548..6128Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10532 5549..6128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924161.8623252-CDS-S-dermatodea_contig10532:5215..55481622924161.8623252-CDS-S-dermatodea_contig10532:5215..5548Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10532 5216..5548 +
1694079060.0212793-CDS-S-dermatodea_contig10532:5215..55481694079060.0212793-CDS-S-dermatodea_contig10532:5215..5548Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10532 5216..5548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10532.373.1

>prot_S-dermatodea_contig10532.373.1 ID=prot_S-dermatodea_contig10532.373.1|Name=mRNA_S-dermatodea_contig10532.373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MASPSGTSYANFGPDDVAIVEPPHRPDRNRASFRKPQASLSARELAVDSP
DNHLLDEEAIDTVEDEPPLLHELVGLALQLPRANDERFRKEFQELLRRSS
GAGRAGGSAK*
back to top

mRNA from alignment at S-dermatodea_contig10532:4906..6128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10532.373.1 ID=mRNA_S-dermatodea_contig10532.373.1|Name=mRNA_S-dermatodea_contig10532.373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1223bp|location=Sequence derived from alignment at S-dermatodea_contig10532:4906..6128+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAACCCCCGCCTTAGCGTAGGACGCCCTCGTATAGTGCGCGACCCCGCTA
CCCGCACACTTCATGCCGACCGCAAAACATCGACGGCGGCGGTAGCTGAG
GCGTCAACAGATCGCGGCGGAAAAACAGCGCATCTAGAAGCACCCCGCGA
CAACCTGCCTCGAGAATCCGGCACATCTTCTGTTGGACCTCGAGAGCCAC
TGTCGAGTAGGAAGGCCGTTGGAGTAGGAGAAGAGGCGAGTGTTCCTGAC
GCGACCACAGAGGACGACAACAACGACAAGATCGAGAAGGGAGGGTGGCG
GCCGGTAATTATGGCGTCCCCTAGCGGCACCAGCTACGCCAACTTTGGTC
CGGACGACGTGGCCATTGTCGAACCGCCGCACAGACCCGACCGCAACCGC
GCTAGCTTCCGAAAACCTCAAGCCTCACTGTCGGCCCGGGAATTGGCCGT
AGACTCCCCTGATAATCACTTATTGGATGAGGAGGCAATTGACACAGTAG
AGGATGAGCCTCCTCTGTTGCACGAGCTGGTTGGCTTAGCGTTGCAGCTA
CCAAGGGCGAACGACGAGCGATTTCGCAAAGAGTTTCAGGAGTTGCTGCG
TCGAAGCTCCGGCGCGGGGCGGGCGGGGGGCAGTGCGAAGTGAGGTATGC
TGTTCTCTAGGGGTAAAAGGGCCGGGATCGGCGGTAAATTGTGCTCAGTT
GGGGCGTTTTGGTGTTTGTACCGGATTAGTAGTAGCGGTGGCGTAGGGGA
GATGTGCGTTATTTGCAAATATGTACTTGTAGGCGATCCTCCTGAGTTTT
TTTAACACACGGGTGTGTTTTGCACATCTTGACTGCATTGCCGTCGTGCA
GGCTGCATTTTCCGAAGGGCACACTGTTGGTGCAGTTTCAAATTTGTCGA
GAGGTCATCCCATCCTACCATTCAAATGCATGGTAGGCCTCGGACGGGGC
CCATTCACCTTGGCAGACTAACTGTGGCTCTCGACATCTCGAAAAGCTCC
CAGCTGCCAACTCCGCAGCTGCTGAATCTCACGAGGAATAATAAGCTAAT
GCGAAACGTGTGTCGGCCACTTTGGCAGCATGCTCCAGCCTTGGAGCCTA
CATAGGCTCTAACCCCTTTGCTCATGACTCGGAAAGGAGCTTCGAGATGT
GATAATCTGTGAAACCTATGTTTCCTACAGTACTCTGGGTAGCAGTATAT
GTGTACCCACACATGGAACCATG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10532:4906..6128+

>mRNA_S-dermatodea_contig10532.373.1 ID=mRNA_S-dermatodea_contig10532.373.1|Name=mRNA_S-dermatodea_contig10532.373.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig10532:4906..6128+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGTCCCCTAGCGGCACCAGCTACGCCAACTTTGGTCCGGACGACGT
GGCCATTGTCGAACCGCCGCACAGACCCGACCGCAACCGCGCTAGCTTCC
GAAAACCTCAAGCCTCACTGTCGGCCCGGGAATTGGCCGTAGACTCCCCT
GATAATCACTTATTGGATGAGGAGGCAATTGACACAGTAGAGGATGAGCC
TCCTCTGTTGCACGAGCTGGTTGGCTTAGCGTTGCAGCTACCAAGGGCGA
ACGACGAGCGATTTCGCAAAGAGTTTCAGGAGTTGCTGCGTCGAAGCTCC
GGCGCGGGGCGGGCGGGGGGCAGTGCGAAGTGAATGGCGTCCCCTAGCGG
CACCAGCTACGCCAACTTTGGTCCGGACGACGTGGCCATTGTCGAACCGC
CGCACAGACCCGACCGCAACCGCGCTAGCTTCCGAAAACCTCAAGCCTCA
CTGTCGGCCCGGGAATTGGCCGTAGACTCCCCTGATAATCACTTATTGGA
TGAGGAGGCAATTGACACAGTAGAGGATGAGCCTCCTCTGTTGCACGAGC
TGGTTGGCTTAGCGTTGCAGCTACCAAGGGCGAACGACGAGCGATTTCGC
AAAGAGTTTCAGGAGTTGCTGCGTCGAAGCTCCGGCGCGGGGCGGGCGGG
GGGCAGTGCGAAGTGA
back to top