mRNA_S-dermatodea_contig1052.365.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Match: D8LTE9_ECTSI (RecQ-mediated genome instability protein 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE9_ECTSI) HSP 1 Score: 435 bits (1119), Expect = 9.830e-139 Identity = 355/743 (47.78%), Postives = 418/743 (56.26%), Query Frame = 1
Query: 214 QTAAEVRESMSALGVHLRQDWIAHCLE-----HMNAAGRGAPQG--AKEEIYRLLLVCDLREAGEACLPAGVGDMAKERIKGKMVVQVESARDVAKSFEQREKVDGGSAHHTLKLALGDGKQTVAAFEYRRIQGLSADPPPGLKLLLVEPWVRRGMLLLSSENTTVLGGEVASLVAARESAQ-NGEEKTGESPTTGSSSHGHNQPAGGGNGPIPNSQRGGDGARQPANGSGRQTRPSTPXXXXXXXXXXXXXXXXPGTTQARRDDTQGRSG----GTGGSSGAVA---------------------------------RPGQAPERAVFNPYAGITQ-------------------------IKPNPAVRAVAGTTSSNDRPSEGVTRSGES---WGRAQGGEARVPAFRD-SDEDEPEFEYDQEPXLXXXXXXXXQPPDET-------PVRNRRGSGARGIRSDPPLTPGSSSSPLXXXXXVTPQPNIVSARVQHERLREEGRRRSR------------DARGGDIADIEGD-SGGGSARDG----PRKKRGRTQG--GSPGSSGGEWELGDDPSFPPRGPFTSLADLEGPTATGG-VYRTKAVVSDTMGCKLRKKKYLLAIEIEDGTAVLRVRLSDTITRRLFGVDAREYKKICQADRDQGFNIQARVEQEIREMEGIMEIDFAPAAAATQSPGAPETPCTAASQGSASGDSEWSLPVLLSVSKPTDADYKRLLSRVQALL 2139
QTA VR+SM+ LGVHLR DW+ HCLE A G G Q A+E +YR L CDLREAGEACLPAGVG M KER+KGKMVVQVE+ARD+AK+ EQREKVDG SAHHTLKLALGDG+QTVAAFEYRR+QGL ADPP GLKLLLVEPWVRRG+LLLSSENTTVLGGEV+SLV ARE+A+ G + T + T +++ +P N P + R + N R XXXXXXXXXXXXXXXX G+ R D+ SG + SSG A RP + VFNPYA + + GT S +RS S GR +GGE RVPAF+D D+D P FEY +EP +PP E VRN R G +RSDPP S+ SP XXXXX D G++ADIEG+ GGG +R G R KRGR+ GS G E G PS PP GP+TSL DL+ A GG +YR KAVVSDT CK+RKKKYLL +EIEDGTAV+ VRLS+ ITRRLFGV+ARE+KKI QAD ++ +IQ RVE+EIREMEG+MEI + A AT SP +P TP A SQ SA+GDSEW LP+++SV PTD D LLSRV +LL
Sbjct: 3 QTATRVRQSMAGLGVHLRLDWVKHCLEAGGGMDPGAIGNGQRQQSEAQEGVYRTFLACDLREAGEACLPAGVGGMVKERVKGKMVVQVENARDIAKNLEQREKVDGSSAHHTLKLALGDGRQTVAAFEYRRVQGLVADPPLGLKLLLVEPWVRRGILLLSSENTTVLGGEVSSLVEARETARAGGAQSTAGAATNATNNDDTLEPRTSRNQPGEPAGRTATDSGAAGNSGPRXXXXXXXXXXXXXXXXXXXXXXXGGSH--RHDENADPSGVVDLSSSSSSGGNADTPLSSQGRRXXXXXXXXXXXXXXXXXXXXXXXRPSGSGS-GVFNPYAAAXXXXXXXXXXXXXXXXXXXXXXXXXXTLSATSSAAETVGTARSQSPQGAARSRSSGSSGGQGRPRGGETRVPAFQDLEDDDGPGFEYLEEPDFDDEEHDN-EPPKEAVAAANAAAVRNGRNPG---MRSDPPRVSTSTGSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVGDGEVADIEGEFGGGGRSRTGLEVSSRSKRGRSSSEIGSRAGGGRERSNGTRPS-PPSGPYTSLEDLDRLAAAGGGMYRVKAVVSDTKNCKIRKKKYLLVVEIEDGTAVVSVRLSEQITRRLFGVEAREFKKIFQADPEKAISIQTRVEKEIREMEGVMEIQTS--AGATSSP-SPATPGAAMSQNSATGDSEWGLPMVVSVKPPTDGDCLELLSRVTSLL 734
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Match: A0A2P6VIC4_9CHLO (RecQ-mediated genome instability protein 1 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VIC4_9CHLO) HSP 1 Score: 100 bits (250), Expect = 3.490e-18 Identity = 62/163 (38.04%), Postives = 89/163 (54.60%), Query Frame = 1
Query: 250 LGVHLRQDWIAHCLEHMNAAG--RGAPQGAKEE-IYRLLLVCDLREAGEACLPAGVGDMAKERIKGKMVVQVESARDVAKSFEQREKVDGGSAHHTLKLALGDGKQTVAAFEYRRIQGLSADPPPGLKLLLVEPWVRRGMLLLSSENTTVLGGEVASLVAARE 729
LG L+ W+A C+ H++A G G P + + + LL DL G A LP G+ + ++GK ++Q + ++ + R S + LKL L DG Q VA EYR L + P G KL++ + VRRGMLLL+ EN +VLGG VA+L AAR+
Sbjct: 13 LGARLQPAWLAACVAHLDARGGFNGLPVERRARLVLQQLLPADLNTCGAASLPPGIQSLHDNTLRGKFLLQADEVLNIGAAVRDRY-TGTDSNNRCLKLLLTDGAQQVAGLEYRPTPALHSAMPAGCKLVVRDAPVRRGMLLLTPENCSVLGGGVAALEAARQ 174
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Match: A0A383VJY1_TETOB (DUF1767 domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VJY1_TETOB) HSP 1 Score: 99.4 bits (246), Expect = 1.330e-17 Identity = 65/163 (39.88%), Postives = 93/163 (57.06%), Query Frame = 1
Query: 262 LRQDWIAHCLEHMNAAGRGA----PQGA-KEEIYRLLLVCDLREAGEAC-LPAGVGDMAKERIKGKMVVQVESARDVAKSFEQREKVDGGSAHHT-LKLALGDGKQTVAAFEYRRIQGLSADPPPGLKLLLVEPWVRRGMLLLSSENTTVLGGEVASLVAARE 729
++Q W+ L+ + A GA P+ ++++ LL+ D R AG LPA + DM K+ ++GK ++Q++ A ++A + R + AH+ LKL L DG Q + A EYR L P G+KLLLV P VRRG+LLL EN VLGG V L AAR+
Sbjct: 20 IKQQWLEQLLQQLQTAHDGAFGQLPRDQQRQKLLEQLLMADFRAAGAGGHLPAAIQDMHKQTMQGKFMLQLDEAVNIAAGIKDRYREP---AHNRCLKLHLTDGVQQLVAVEYRHCPALGLLMPAGIKLLLVNPAVRRGVLLLQPENVVVLGGVVERLEAARQ 179
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Match: A0A7S4PCI8_GUITH (RecQ-mediated genome instability protein 1 n=3 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PCI8_GUITH) HSP 1 Score: 95.9 bits (237), Expect = 5.530e-17 Identity = 57/172 (33.14%), Postives = 86/172 (50.00%), Query Frame = 1
Query: 220 AAEVRESMSALGVHLRQDWIAHCLEHMNAAGRGAPQGAKEEIYRLLLVCDLREAGEACLPAGVGDMAKERIKGKMVVQVESARDVAKSFEQREKVDGGSAHHTLKLALGDGKQTVAAFEYRRIQGLSADPPPGLKLLLVEPWVRRGMLLLSSENTTVLGGEVASLVAARESA 735
A + S+ +LG HL W+ GR A + E+Y L L DLR +G ACLP G+ M K+ + G V+Q++ ++++ E R G LKL L DG + + E I+ LS + P G+K+L+ + +RRG+ L N VLGG + L R+ A
Sbjct: 13 AGSLGASLKSLGFHLEDGWLRQAHRACRRTGRDADK----ELYELALYSDLRLSGRACLPPGIRSMHKQTVSGTFVLQIDEVINISEPNEHRLADTRG---RMLKLLLTDGTENICGLELNEIRDLSVNSPAGVKVLVKDFEMRRGVALFGPHNLCVLGGMCSDLEKKRQKA 177
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Match: A0A7J7QC97_9CHLO (RMI1_N domain-containing protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QC97_9CHLO) HSP 1 Score: 88.6 bits (218), Expect = 1.000e-16 Identity = 58/125 (46.40%), Postives = 74/125 (59.20%), Query Frame = 1
Query: 361 VCDLREAGEAC-LPAGVGDMAKERIKGKMVVQVESARDVAKSFEQREKVDGGSAHHT-LKLALGDGKQTVAAFEYRRIQGLSADPPPGLKLLLVEPWVRRGMLLLSSENTTVLGGEVASLVAARE 729
+ D R AG LPA V DM K+ ++GK ++Q++ A ++A + R + AH+ LKL L DG Q + A EYR L P G+KLLLV P VRRGMLLL EN VLGG V L AAR+
Sbjct: 1 MADFRSAGAGGHLPAAVQDMHKQVMQGKFMLQLDEAVNIAAGIKDRYREP---AHNRCLKLHLTDGVQQLVAVEYRHCPALGLLMPAGIKLLLVNPAVRRGMLLLQPENVVVLGGVVERLEAARQ 122
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Match: A0A5P1FHM6_ASPOF (RecQ-mediated genome instability protein 1 n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FHM6_ASPOF) HSP 1 Score: 94.4 bits (233), Expect = 2.910e-16 Identity = 58/171 (33.92%), Postives = 87/171 (50.88%), Query Frame = 1
Query: 229 VRESMSALGVHLRQDWIAHCLEHMNAAGRGAPQGAKEEIYRL----LLVCDLREAGEACLPAGVGDMAKERIKGKMVVQVESARDVAKSFEQREKVDGGSAHHTLKLALGDGKQTVAAFEYRRIQGLSADPPPGLKLLLVEPWVRRGMLLLSSENTTVLGGEVASLVAARE 729
+ E + LG+ LR++W+ C+ ++ +G G + E +L L D+ G LPA V M K ++G V+Q++ ++A +R LKL+L DG Q V EYR I+ L P GLK+++ +RRG+L+L E VLGG V L AARE
Sbjct: 105 IDELLQRLGLRLRREWLESCVSGLDRSGLGFERMGVSEKAKLCFEQFLFSDMSYCGAGILPANVSGMHKVELEGPFVLQIDEVINIAVPLRERYHRAHAGTKRCLKLSLTDGIQRVFGMEYRPIKDLDVIGPAGLKIIVRNIHIRRGLLMLVPEVLEVLGGLVEDLEAARE 275
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Match: I0YM16_COCSC (RecQ-mediated genome instability protein 1 (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YM16_COCSC) HSP 1 Score: 92.0 bits (227), Expect = 9.500e-16 Identity = 56/172 (32.56%), Postives = 90/172 (52.33%), Query Frame = 1
Query: 226 EVRESMSALGVHLRQDWIAHCLEHMNAAGRGAPQGAKEEIYRLL----LVCDLREAGEACLPAGVGDMAKERIKGKMVVQVESARDVAKSFEQREKVDGGSAHHTLKLALGDGKQTVAAFEYRRIQGLSADPPPGLKLLLVEPWVRRGMLLLSSENTTVLGGEVASLVAARE 729
EV+ S++ +G+HL+ +I + + P EE +L+ L DL G CLP + ++G+ V+QV+ A D A +QR +G LKL+L DG++ AFE I + P GLK+++ + ++RGML+L EN +V+GGEV + AR+
Sbjct: 3 EVKASLAEMGIHLKSAFITKVMRLLTT-----PTAPVEERVQLIMSHFLTADLNMCGSGCLPHNLHSEHNSVLRGRHVLQVDEAVDTAACAKQR--YEGAGGRRCLKLSLTDGQRRAFAFEQTPIAAIKTLCPAGLKVVITDAPIKRGMLVLKPENISVIGGEVERMEQARQ 167
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Match: A0A8J5XN38_DIALT (DUF1767 domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XN38_DIALT) HSP 1 Score: 92.8 bits (229), Expect = 1.110e-15 Identity = 53/142 (37.32%), Postives = 74/142 (52.11%), Query Frame = 1
Query: 241 MSALGVHLRQDWIAHCLEHMNAAGRGAPQGAKEEIYRLLLVCDLRE-AGEACLPAGVGDMAKERIKGKMVVQVESARDVAKSFEQREKVDGGSAHHTLKLALGDGKQTVAAFEYRRIQGLSADPPPGLKLLLVEPWVRRGML 663
+ AL + R+DW+A C+ + A G P E + R LL D+R AG LP G G + + R+ G V+QV+ DVA+ ++R A LK L DG +V EY + LS PPG K+L+ P VRRG+L
Sbjct: 17 LEALRLSAREDWLAACVANARA---GPPAALLEHVVRQLLAADMRACAGRPALPGGAGSVVRARLAGSFVLQVDELVDVARKRDERAADTPAGARRVLKARLTDGFSSVCGIEYTPLPELSPALPPGAKVLVSNPVVRRGLL 155
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Match: A0A804KVA0_MUSAM (RecQ-mediated genome instability protein 1 n=3 Tax=Musa TaxID=4640 RepID=A0A804KVA0_MUSAM) HSP 1 Score: 91.7 bits (226), Expect = 1.630e-15 Identity = 57/170 (33.53%), Postives = 83/170 (48.82%), Query Frame = 1
Query: 229 VRESMSALGVHLRQDWIAHCLEHMNAAGRGAP----QGAKEEIYRLLLVCDLREAGEACLPAGVGDMAKERIKGKMVVQVESARDVAKSFEQREKVDGGSAHHTLKLALGDGKQTVAAFEYRRIQGLSADPPPGLKLLLVEPWVRRGMLLLSSENTTVLGGEVASLVAAR 726
+ E + LG+ LR DW+ C + + AAG G G + + L+ D+ +G LP V M K ++G VVQV+ +++ +R LKL++ DG Q V EYR I+ L GLK++L +RRG+LLL E +LGG L AAR
Sbjct: 82 IDEFLRKLGLRLRPDWLESCADRLMAAGSGFEGLDVAGKAKRCFEQFLLSDMNVSGAGVLPENVHLMHKTELEGPFVVQVDEIVNISAPLRERYHDTPAGCKRCLKLSITDGVQRVFGMEYRPIKELEVLAASGLKVVLRNVHIRRGLLLLVPEAFAILGGMADELDAAR 251
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Match: A0A1E5VPI5_9POAL (RecQ-mediated genome instability protein 1 (Fragment) n=1 Tax=Dichanthelium oligosanthes TaxID=888268 RepID=A0A1E5VPI5_9POAL) HSP 1 Score: 90.5 bits (223), Expect = 4.750e-15 Identity = 53/164 (32.32%), Postives = 82/164 (50.00%), Query Frame = 1
Query: 241 MSALGVHLRQDWIAHCLEHMNAA-GRGAPQGAKEEIYRLLLVCDLREAGEACLPAGVGDMAKERIKGKMVVQVESARDVAKSFEQREKVDGGSAHHTLKLALGDGKQTVAAFEYRRIQGLSADPPPGLKLLLVEPWVRRGMLLLSSENTTVLGGEVASLVAARE 729
+ LG+ LR +W+ C + G G + + L D+ + G LP GVG M + G VVQV+ +++ ++R + LKL++ DG Q + EYR I+ L+ P GLK++L +RRG+L+L E +LGG V L AAR+
Sbjct: 192 LRGLGLRLRPEWLESCAAGIPGFDGLGGAEAQARRCFEQFLFADMNDCGAGVLPEGVGGMHAAVLDGPFVVQVDEIVNISAPLKERYRDAHAGPKRCLKLSMTDGIQRIFGMEYRPIKYLAVLAPAGLKIVLRNVHIRRGLLMLVPEVIEILGGVVDELEAARD 355 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1052.365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1052.365.1 >prot_S-dermatodea_contig1052.365.1 ID=prot_S-dermatodea_contig1052.365.1|Name=mRNA_S-dermatodea_contig1052.365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=650bp MMRPSDLQTAAEVRESMSALGVHLRQDWIAHCLEHMNAAGRGAPQGAKEEback to top mRNA from alignment at S-dermatodea_contig1052:4957..12296- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1052.365.1 ID=mRNA_S-dermatodea_contig1052.365.1|Name=mRNA_S-dermatodea_contig1052.365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=7340bp|location=Sequence derived from alignment at S-dermatodea_contig1052:4957..12296- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1052:4957..12296- >mRNA_S-dermatodea_contig1052.365.1 ID=mRNA_S-dermatodea_contig1052.365.1|Name=mRNA_S-dermatodea_contig1052.365.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3900bp|location=Sequence derived from alignment at S-dermatodea_contig1052:4957..12296- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |