mRNA_S-dermatodea_contig10505.362.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10505.362.1
Unique NamemRNA_S-dermatodea_contig10505.362.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10505.362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10505contigS-dermatodea_contig10505:1937..7121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-27_006900.1
Exons3
Model size361
Cds size360
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10505.362.1prot_S-dermatodea_contig10505.362.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10505 1937..7120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924160.8719769-CDS-S-dermatodea_contig10505:1936..20021622924160.8719769-CDS-S-dermatodea_contig10505:1936..2002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10505 1937..2002 +
1694079059.25902-CDS-S-dermatodea_contig10505:1936..20021694079059.25902-CDS-S-dermatodea_contig10505:1936..2002Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10505 1937..2002 +
1622924160.88404-CDS-S-dermatodea_contig10505:5055..51791622924160.88404-CDS-S-dermatodea_contig10505:5055..5179Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10505 5056..5179 +
1694079059.2692347-CDS-S-dermatodea_contig10505:5055..51791694079059.2692347-CDS-S-dermatodea_contig10505:5055..5179Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10505 5056..5179 +
1622924160.8939984-CDS-S-dermatodea_contig10505:6950..71201622924160.8939984-CDS-S-dermatodea_contig10505:6950..7120Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10505 6951..7120 +
1694079059.278057-CDS-S-dermatodea_contig10505:6950..71201694079059.278057-CDS-S-dermatodea_contig10505:6950..7120Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10505 6951..7120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10505.362.1

>prot_S-dermatodea_contig10505.362.1 ID=prot_S-dermatodea_contig10505.362.1|Name=mRNA_S-dermatodea_contig10505.362.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=120bp
RNEHGNTPLHSAAATGTVEVLSYLLGRSVNPDAVNAEGHTADRMSGAGAE
AFELLEKARRRRKACIAQRLELIRLHNLWNAGRAKAKASTPGSVERSAAS
DARALVIEPAGARDIGVVCS
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mRNA from alignment at S-dermatodea_contig10505:1937..7121+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10505.362.1 ID=mRNA_S-dermatodea_contig10505.362.1|Name=mRNA_S-dermatodea_contig10505.362.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5185bp|location=Sequence derived from alignment at S-dermatodea_contig10505:1937..7121+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAAATGAGCACGGGAACACGCCGCTGCACTCGGCGGCTGCGACGGGCAC
AGTCGAGGTGTTGTCGGTGAGTCGAGGCGAGGGTTCGCGCGCTGAAAAGA
AAAAAGCGGGCGTCTCTTGTAGGGTGGAGTTTTTTTTTCTTGGTTTTTTC
GTTTTTGTACAAGTTTTTATCGAGAACGGGGTATATAGAAGACATATCTA
TATACGCGCCCCAGTTGCAGGGTGAAGTCCAACGACCCCTTCACCATCCA
TCTCAGATTTTCTCGGCAAGAGCTGGCGCAGGCAGACCCAGTGCCTTGCT
CCTGTGCCCCTGCGGCAGATCGACTATCTAGTTGTGAGGTGGAACCACGC
ACTACCGATGATGCTGCCCCGCGAAGTGACTCAAGAAGATAAGACAGGAT
CTCTTGTTGGCGAAGATCCGCTACAGCATCATATGCATACTCTTGATTTT
TGACAGCAGTGAAGTACTGTAGTGGTATGATACGACGGCTACGATACGAG
TACGATACAATACACTCTTTGGTGAATTTTTGTATATATTTTTTGTATGC
TATACGTGTGCAAATCAATCAATCAAAAAAATCAATCATATACACAGCAC
AGATGAAAAAGAGTCGTCGCTGTTTTTTGTTTGTTGGTACAGCAGTATGA
TATGGGTTCTTTAGTTCAGTTATGATTAGTTCTTTTTCTCCTGGACTCTT
TGCGTGTCTGACCACAAGGCAGGTCGGATAGCGGAATCGGCTATACGTGT
GCAAATAATCAATCAATCAATCAATCAATCAATCAATCAATTTGGTTTTT
AGGCACCTTTAACGGCCGGACCGTTGTACCTTGTACGCCATAAAAAAATG
CGCGCTCGGAGTAATTATCTCAAAAAAATCTTTTGTTGTACGACAAAACC
AGCAGGGGGTTGAAGCCGGGGGGGGCTTCTTGGCTTCTTGGCACAGATCC
CTAGACCAGCATCAGCAGCACTACTTGTATCGCTATCATAGCTTGCGCAA
GCTATCCTTAGAAGTTGGTGACAAGGGTTTTGCTTGTAACGTATTATAAC
GTATTATAACGTATTATTAATATATTAATTGGCTATCGTATGATAGCGAT
CTATTCTCCTGGCGTGTTGTTCTCTCGATCTTCAATACATATGTCTATCT
ATGATCGGTGCTGTATACCAGTCGTTACACATATGAAAAATGTGAAAAAA
AGGAGAAAAAACAAAGCCAAGTTTCGCAAACGACGGAATACCTCGAATTT
TCCGGGAACGCGGAGCAGAGAGTAAGAGATGATAAAACATAAAACACACC
CACCAGTTGCTTTTTTTTTTCTTTGGACTTGTTCGAAGTTTCTCTTGATT
AAAAGGAGACGCGGGAAAGCAGACGTCACTCGCCGTCATGATTTTGATCC
TGGTGCTTTTTTTTTAGCAGCGGTTTGCGGCGCACCGCGTGTCCGGCTTC
ATGATGCCGCGGCAGTCTAGTCCGTTACATAACATAGTCAGATAGTCAGC
ACCGTGCTGCAGACTGCTGTGTACCGACATAGGGTTATCGTTATTTGCTC
GCGCGGGTCGGGGCTTCCGGCTTTTTTCGGAAATCGAAATACCGCGGTCA
CTTTTTCAGATTCAAATTGATTCAAATTGATTGGGCGCTGGCTGCGGTAC
TACTATTATTAAACTGTCTGCACAATTCACAATTCAAGCGACGTTGGTTA
CTACTGTATTAAATACTCCGGAGTATATACAGTAGATATATAGAGCAGAG
CTCTATGTTCTTACGTTGTGTGAAGATACCTACCTACCTAATACACAACG
TTTGGATGATGACATGTATTTACTATTGATACCAAGAAGTGTTGATATTT
TTCTCCTACTACAGAGTATAACTACGCTGTCTGAAAACTCCTATAGCGTT
AGATACTCCGCTGTTTGACTCGGTCACTCGGTCTCCAGGGAGGTTTTGTG
GTGCCTTGTGCCTTGGGTTAGCCGGTCTTTGCGGCTCGTCAGGGCTTCGG
TTGCGAAGCTTCGGCCTGCGACGCTTCTTGGTTGCAAACCATGCCAACGA
CCGCTCGCTCTTCTTGTAGTAAGCGCTTGACAATGTCCCTCTCTTGGCTG
CTGGCTTAGCTTGCGCTATCATATCATACATACGATGGTGTGTTGGACCG
TCTGTTCGCGCTTGTTTGTTCGTGTACTGTATATACGTATCATAACACAG
AGTACAAGGATGTCTGTCGTGTTTTCTGTTTCATGCCTATTGTACGGTGC
CAGGGCACAGCAGGAAAAAAAATAGCGGGGGCAGGGAGATGGCCGTGACA
CAGGTTGAGTCAATCATGCTCAAAGCAACAGATTGGATAACAATTAAACA
TATAATATTTTATGCCACGCAACGAAAGCTGCACCACCCCACACTCCACC
CCCCCCCCTTCGACTCTCAACAGATCACAGATTGTTTCCTGCCCCAGGGT
GTAGGTGTAGGGTGTGAGGTCGGGGGGGGGAAGCGTTTGCGTTTGATGGG
GTTGGACCCGTTTGGACCCCGGCGTGTTTTGTGTTTTGTTCTTGTTCATG
ATGGGGAAATGTGCGCGTGGGGGGGTCGCAGACTAGTTCCCGTCTTCGCA
TATCGCCTGGTGGGGGGCGCATTGTATGGGCAGCCTTGAGCGTTTCGTCG
CGAAAGCCAACACCGGCGACGCGGGAACCAGAAAACGCGCGTTGAGGAAA
GGCGCCGAAACACGTGGCGGGAAGAAGAGGAAATAAAATGAAGTTTGTAC
AATTTTTTTCCCGTTCATTGGTCCTGCCATAAGTGGGTGTGACCTTTCGG
CCCAAGAGCTCGCCAGGAGTGGTGGCGTGCGCAAAATGAATATGCACCAT
CAACCCGAAGCAATAGGCCTCTGTGTACTCGTTTGTTTCTATAATACTAC
TGCTGTACTTTTCACTTTTACAGCTGCCTTGATTACATTCTGTATTCTAT
CTTATGTACTGCATGATGTCATAACTGACAACACACACTGTATTTTAGAG
ATATATACCTCCACGACACGCACAAGTGGTTTACTCTTCTGTTGTGTTGG
GTTGCCATTCCCTCCCTTACGACGTTACCCAAAAATCACCGAATCGTGGG
ATCTTGTTTGTATATCCAGTATTTGCTGGGTCGGTCGGTGAACCCGGACG
CCGTGAACGCGGAGGGGCACACGGCAGACCGCATGAGCGGTGCCGGGGCG
GAGGCGTTCGAGTTGCTGGAGAAGGCAAGGAGGAGAAGGAAAGGTGAGCT
TGTTCGCGTACACGACGAGCCTGTTTCACGGTTTAGTATTCGCGAATTGA
TGCCTAATGTGCAAATATGTAGTGTATCAATTGTAAGTTACAGAGTATCG
TATTGCTTCTCTTCTCTTTCCTTGCGTCTGAATTTGATCATCAGACATGG
ATACTATTGATACTTGCACAGCTATCGTAGCTGCCTGTGAACTGCTGCTG
TAGTACTGCTGCAGTTAGTTGTCCTGCTTGTTTTGATGTGTTAGTATAGT
CGTGCTCGCGGGGTATCCTGTCGTGTATGATATGCTACTGTTTTGATTGA
TTGATTGATGATTGATTTGCACACGTATAGCCGATCGGCATAATCCGACC
CGACTTGTGGTCAGACACGCAAAGAGTCAAGGAGAAAATAACTAATCAGA
ATTCTACTTCTACTATACACCGTACCGCCCCTGCATTATCACACAGTACA
CCATTTCGAGGTTGACTTGTTCGCTGGCCGTCTTCGCAACAAGCCTTACT
CCCACCGTCTCAATGACTCCTGTAATACATACTGCACCTGTGAATGCTTC
AATACCACCAGTATTTACTTTATGTATGCATTATAGTAGTATAGTCGCTG
TAACGGTAGCGTTGCGATATTTTCTGTTTCCCACCCTGCGTATCATACGA
ACTGCAGCCGGCTTGCGCCCTGGTCCGGTCGCAATCCGCCACCGCCACTG
GTCCCGCTATATAGACGCGGAAACGGCTAACTCTTATGCCTCCCTGTGCG
AGAATTTGGAATGTGGAGGGCGCCATGGGCGGGCTAATTCTTGAACACAT
CGTTTCCCCGCCCGAATATCATTAAACTATCGGGTACTTGACTCAATACA
AATATAATAGTTGAAAGCGACACTGAAATACCCTCCCTCCCCCCCCCCCA
TGTATTATTATTCTCCCCGGGCTCCTCCTCCTTGTCTGCCTTCCCTATGC
ATGACTTGGTTTTGTTGAGTTACTACAGTTGTATCATGGTTTCCCAAAGA
TTCGTTGAGCTTGACAACGTTACGGGCAGATGGCAGCCATTCTTCGAAAA
GTCGCCATTTCTCTGTGCGAAGTCGCCAAACGTCGCGTGAACAGTCAAAA
GAGACGATGCTTCTTCGTCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCTTTTTTTTTTTCTTTAAAATGTTATAAATATAAAATATGCCCATAA
NNNNNNNNNNAAAACCATCTCTCTTCCTTCCCCCCCCCCCCCCCCCCCCC
CCCTTGCCCACCCTCTATGTTATATTACGTATAATGTCATATCATAGTAG
ATCGCGCGAAGAAATGGGAGGGTAAAAACGCGACCCCTTTGCGGAAAGGT
AGTACTTGTAGAAGAGCAGCAGGATCGACCGACCCGACGGTAGTGCGGAA
GTTTACCCTGATAGCCCGAAGAAAGAATAGTAAGGAAAAGGCAAGAGTCT
TGTACATATGTATCATACCGTATGTAAACCTCATGCTTTATATAGAGCCA
TGTACATATTTTATGCAGTATACGTCATCGAAGTCACCGCGTGCGATACA
AGGGCTGTGGAGAAGCGAAGTACCTACCTTAGACAGCAGCAGTAGCAGCC
GACAGGAAATTACTTCTTGTGACTCGAGACACACGCAAAAAAAAAAAAAC
GTTGTAGTTTGGTCGGACGAAGCATTGAAGACGAAGGGATATCAACCGTA
TCCGCCCCCTCGCGCTCCCCCCCCTGCGATGCCTCTCCCGATTTGTACCC
GCTCCTTGAAATAGCCTGCATCGCCCAGCGGTTGGAACTCATCAGGCTCC
ACAACCTGTGGAATGCCGGTCGGGCAAAGGCCAAGGCTTCAACCCCGGGC
TCGGTCGAGAGATCAGCTGCGAGTGACGCACGCGCGCTTGTTATTGAACC
TGCGGGCGCACGTGACATCGGCGTTGTTTGCTCCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig10505:1937..7121+

>mRNA_S-dermatodea_contig10505.362.1 ID=mRNA_S-dermatodea_contig10505.362.1|Name=mRNA_S-dermatodea_contig10505.362.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at S-dermatodea_contig10505:1937..7121+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAAATGAGCACGGGAACACGCCGCTGCACTCGGCGGCTGCGACGGGCAC
AGTCGAGGTGTTGTCGCGAAATGAGCACGGGAACACGCCGCTGCACTCGG
CGGCTGCGACGGGCACAGTCGAGGTGTTGTCGTATTTGCTGGGTCGGTCG
GTGAACCCGGACGCCGTGAACGCGGAGGGGCACACGGCAGACCGCATGAG
CGGTGCCGGGGCGGAGGCGTTCGAGTTGCTGGAGAAGGCAAGGAGGAGAA
GGAAAGTATTTGCTGGGTCGGTCGGTGAACCCGGACGCCGTGAACGCGGA
GGGGCACACGGCAGACCGCATGAGCGGTGCCGGGGCGGAGGCGTTCGAGT
TGCTGGAGAAGGCAAGGAGGAGAAGGAAAGCCTGCATCGCCCAGCGGTTG
GAACTCATCAGGCTCCACAACCTGTGGAATGCCGGTCGGGCAAAGGCCAA
GGCTTCAACCCCGGGCTCGGTCGAGAGATCAGCTGCGAGTGACGCACGCG
CGCTTGTTATTGAACCTGCGGGCGCACGTGACATCGGCGTTGTTTGCTCC
CCTGCATCGCCCAGCGGTTGGAACTCATCAGGCTCCACAACCTGTGGAAT
GCCGGTCGGGCAAAGGCCAAGGCTTCAACCCCGGGCTCGGTCGAGAGATC
AGCTGCGAGTGACGCACGCGCGCTTGTTATTGAACCTGCGGGCGCACGTG
ACATCGGCGTTGTTTGCTCC
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