mRNA_S-dermatodea_contig10501.358.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10501.358.1
Unique NamemRNA_S-dermatodea_contig10501.358.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10501.358.1 vs. uniprot
Match: D7FN94_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN94_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 4.580e-53
Identity = 91/118 (77.12%), Postives = 105/118 (88.98%), Query Frame = 2 
Query:  752 LVFTSWWHETTIGTENVMNRKHASIRYNTSTGALEVELEDVPMIFEVSHATGRHGKIELIDVRVGAQISILGRQMRLMQCDGLTAKWLESEVRAITKEKAVLVSAIEREGDEKRVRCR 1105
            LVFTSWWHETT GTEN +NRKHASIRY+T+ G+LEVELEDVP IFEVSHATGR+GK+  +D+RVGAQ+SILGRQMRLMQCDG+TA+WLESEVRAITK KA L++A+E  GD  RV CR
Sbjct:  267 LVFTSWWHETTTGTENTVNRKHASIRYSTANGSLEVELEDVPAIFEVSHATGRYGKVGAVDIRVGAQLSILGRQMRLMQCDGVTAQWLESEVRAITKAKAALITAVEDGGDSVRVTCR 384
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BLAST of mRNA_S-dermatodea_contig10501.358.1 vs. uniprot
Match: A0A6H5KUJ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ0_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.400e-31
Identity = 75/129 (58.14%), Postives = 83/129 (64.34%), Query Frame = 2 
Query:  749 WLVFTSWWH----------ETTIGTENVMNRKHASIRYNTSTGALEVELEDVPMIFEVSHATGRHGKIELIDVRVGAQISILGRQMRLMQCDGLTAKWLESEVRAITKEKAVLVSAIEREGDEKRVRCR 1105
            WLVFTSWWH          ETT GTEN +NRKHASIRY+ + G+LEVELEDVP IFEVSHATGR  K       V               CDG+TA+WLESEVRAITK KA L++AIE  GD  RV CR
Sbjct:  270 WLVFTSWWHVRRCSSSRTAETTTGTENTVNRKHASIRYSAANGSLEVELEDVPAIFEVSHATGRQTKASGFVKCV---------------CDGVTAQWLESEVRAITKAKAALIAAIEDGGDSVRVTCR 383
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10501.358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN94_ECTSI4.580e-5377.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUJ0_9PHAE1.400e-3158.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10501contigS-dermatodea_contig10501:1092..4119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog112098.XP_008618021.1
EggNOG OGs2BJJR@1,2S1GF@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003450.1
Exons6
Model size1105
Cds size573
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924160.6010249-UTR-S-dermatodea_contig10501:1091..12041622924160.6010249-UTR-S-dermatodea_contig10501:1091..1204Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10501 1092..1204 +
1694079059.0647945-UTR-S-dermatodea_contig10501:1091..12041694079059.0647945-UTR-S-dermatodea_contig10501:1091..1204Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10501 1092..1204 +
1622924160.6104743-UTR-S-dermatodea_contig10501:1697..21161622924160.6104743-UTR-S-dermatodea_contig10501:1697..2116Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10501 1698..2116 +
1694079059.073645-UTR-S-dermatodea_contig10501:1697..21161694079059.073645-UTR-S-dermatodea_contig10501:1697..2116Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10501 1698..2116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924160.6210458-CDS-S-dermatodea_contig10501:2116..22411622924160.6210458-CDS-S-dermatodea_contig10501:2116..2241Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10501 2117..2241 +
1694079059.0809999-CDS-S-dermatodea_contig10501:2116..22411694079059.0809999-CDS-S-dermatodea_contig10501:2116..2241Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10501 2117..2241 +
1622924160.6296687-CDS-S-dermatodea_contig10501:2252..23701622924160.6296687-CDS-S-dermatodea_contig10501:2252..2370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10501 2253..2370 +
1694079059.088472-CDS-S-dermatodea_contig10501:2252..23701694079059.088472-CDS-S-dermatodea_contig10501:2252..2370Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10501 2253..2370 +
1622924160.6376364-CDS-S-dermatodea_contig10501:3033..31671622924160.6376364-CDS-S-dermatodea_contig10501:3033..3167Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10501 3034..3167 +
1694079059.0955517-CDS-S-dermatodea_contig10501:3033..31671694079059.0955517-CDS-S-dermatodea_contig10501:3033..3167Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10501 3034..3167 +
1622924160.6463087-CDS-S-dermatodea_contig10501:3620..36991622924160.6463087-CDS-S-dermatodea_contig10501:3620..3699Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10501 3621..3699 +
1694079059.1030974-CDS-S-dermatodea_contig10501:3620..36991694079059.1030974-CDS-S-dermatodea_contig10501:3620..3699Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10501 3621..3699 +
1622924160.655407-CDS-S-dermatodea_contig10501:4002..41191622924160.655407-CDS-S-dermatodea_contig10501:4002..4119Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10501 4003..4119 +
1694079059.1103766-CDS-S-dermatodea_contig10501:4002..41191694079059.1103766-CDS-S-dermatodea_contig10501:4002..4119Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10501 4003..4119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10501.358.1prot_S-dermatodea_contig10501.358.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10501 2117..4119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10501.358.1

>prot_S-dermatodea_contig10501.358.1 ID=prot_S-dermatodea_contig10501.358.1|Name=mRNA_S-dermatodea_contig10501.358.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=191bp
MRPSYLGPPTIPYPTEPLSSYRPTKLDAVTLCNQGNARRTRRPEGGVPVA
ARRERASRRRRKGTKTRMPVPKWLVFTSWWHETTIGTENVMNRKHASIRY
NTSTGALEVELEDVPMIFEVSHATGRHGKIELIDVRVGAQISILGRQMRL
MQCDGLTAKWLESEVRAITKEKAVLVSAIEREGDEKRVRCR
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mRNA from alignment at S-dermatodea_contig10501:1092..4119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10501.358.1 ID=mRNA_S-dermatodea_contig10501.358.1|Name=mRNA_S-dermatodea_contig10501.358.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3028bp|location=Sequence derived from alignment at S-dermatodea_contig10501:1092..4119+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCGCCTCGAGGCTGCCTGAAGTGAAGCAGCCCAGGTCGCCCCCGAA
GCCGACGCTGGAAGTAATCGCAAAGCAGCTAGGCGTCGACGTGGCTTCCG
AGCCAGATCTACTGTGAGATTGAGCGTTAAGGCCGAATGTCATATTGATA
CCGCTGTCAGTCACTCAATCATCACAGCAGTATACCGCACGCCCTACATA
AAAACATAATGTACGAGCTTCCCTGGGCGGCGGCCTCACTGCTGTACCTA
CATACTGCTTTGTGTAAGTAATACCATACAACACCTGTATTTCCGTTGAT
AGCTCTCTTCGTAGAGAAAGACGAAGTGAGCGTGTTTCCATCGCGACTGC
CCCCCGCTCCCGGGTCACAGCATTAGGCTGGCCCTTTGTCAAGCATCACC
TCATGATATTTGTGATATCACGAGGTTGTACTTGAAACCGGCAAGGACGT
TGAAGTTTGTGTTCTTTCCTTTACGCGCACATCGTGTTGTCCAGGACGGC
GGCCGTACGACCGCACGTTGCTAAGGCTTCCACATGAGCTAAATATATGT
ATATATCCTGCCGGCGCTCGCCCACCTCTCGGCATCCCTCGTATCCACCT
ATCCAGGCAAGTACTAACAGAGATGCAGCACACACCTCTCCCGCCCACGT
GGATCGCCGTTGAAGTCGCCGCGGCGGACGCAAAAGAGCGGTGCCCGACG
CTTCCGTCGACAGAAGGTGTTTTAGCCCAAGGGCTAGAGTACGTAAACTG
TATCACCAAGGAAAAGACGGGTCGGCATCCAGGCGCTCAGTACTTTCTAG
CGATGGTAGAGAGGAGGAGGGAAGAACGTACGCGGGCCTGGAGCAGAACG
CCAGAGGCCTCACTCCAGTCCACTCCGCCGTCTCAGGGGGGAGCTGACTG
CAGTAACATGACGGACGAGTCTACGGAGGGCGGGGCTGTGTTCCAAACCA
ACTCAAGCAGGTGAGCTTGGTGCCGCTGACGTTCCACGTCAATGTAAACT
GGGGCATCTCTCCGGCACGTCAGGTATGCGCCCGAGTTACCTTGGTCCTC
CGACAATTCCCTACCCCACCGAACCGTTGTCCTCCTATCGACCAACGAAA
CTTGACGCAGTGACACTCTGCAATCAGGGGAACGCTCGGAGGACAAGGCG
GTGATGATGAGACCCGAAGGAGGCGTACCTGTAGCTGCTAGGCGTGAGCG
AGCTTCCAGGAGGCGAAGGAAAGGCACTAAGACGCGAATGCCTGTTCCGA
AGTGGCTGGTCTTCACATCTTGGTGGCATGTGAACCAGTCGGCAGAGCGT
CCACGTAGTACGCTGCACCTGTAACGAACGACAAGGATGGTCACATACTC
TAGAATATGATATCGTGGCTTGTTCAAAATAATAAGCGCTATTATCCGTG
AGTTGAAATTCTTGCTGACCGAGCTATGTGTAATTGACAGCCAGTATGGA
AGTGCCGTTTCGGGAAACCGATAAAACCTTTCCACCAAACAAAGTGGTTT
TGTGCACCAATTCCCCTCTGGCTTCTATTTCCGATCCAGGGATTGTCTTG
CGCATGGAAGGCGACATGCGCCACAAAGGGGGTCGATCGTCTTCTTGTAA
CCGCTACGGATCGACTATCATACCAGTCCTTATGTCCTATCATAGTATGT
GGGAATGCTCAACCATGCCTACCGGTCGTGTATTGCCAGACACTGAACTT
CCAGGCGTCTGACTGCATTAAGTCCCCCCTGTTAAAAACTCCTCCTACCG
ATCCCGTTCGTGTCTTGAAACGCTTACGTGGAATGACCTGCTGCTGATAC
TTCGAAGTATAATGTGGCTGCCGAAAGTAAAATTACGATCTGGGCGCTTA
TCACCTTTCGGGCGCTTGCCCACCATCCCAATATGTAACAGATCGTGGGA
CCTAAACGCCACGCCGCATTCTGCACACATATATCATACCAGGAAACAAC
TATCGGCACGGAAAATGTCATGAACAGAAAGCACGCCTCGATTCGATACA
ATACCAGCACGGGAGCCCTCGAGGTGGAGCTGGAAGACGTGCCTATGATT
TTTGAGGTCTCACATGCCACCGGAAGGTGATTTGTGTGGCCTGCTTTAAT
CGGTTCAACGGCCGTGGGGCGAGTGGAAGGTCTTGCGATCGTCAAGAGTT
CGTGACGGGCATGATTCCATTTGTTTTACCGAAAAGTGAAAAAGTTAGAC
TGATCTGAGTCAGTTTCCCATTAATTACGGCATGTTTTCCCGACCACTAC
AGTGGCCCATCATCTTGCAGCGTGGGTGCTTCAGTCAGAGGGTTGAAAAG
GAGGGAACTGCTTGTGGTGAGCGAAATGAATTCGCCTACTGATGGTGTAC
ACTCGATACTCGTATACTCGTATACTCGTGTTGCAAGAGTGCAACTCGCT
TTTCTTTGCATGTGTGTTATATCTATAAGATACGAGGGATTAGCGTTTTG
CTCTAAGGTTTGCATGCAAAGCACAGCCTCGGCTGTGTCCTAACGCGCCA
TGCCTTCTGCCGCAACGCTATGTTTACAGACACGGAAAGATCGAGTTGAT
CGACGTTCGCGTGGGAGCTCAGATATCTATCCTGGGGCGACAGATGCGCC
TCATGCAGGTGCGATGTGTCTTTGAAACGGTCTCAGCGACCCCTCCGTTG
ATGGAATACACCCCCAACACGGTTCAATTAACGCGAGCGCTCGATGAGCG
GCACGATATCGCGTGCGATTCCTTGGTCCAAGCACATAATTCCCGCTCTA
GCCGAGCCGCCAAGCGTGGAGTGTTCGGACGTTGTCCGTGAAGCTGCGTC
CGTGTGCACGTAGAGCTCGCAAAGTTCTCCTAGCGATCACAGATGAATCT
CTGGCCAATGGTTACTCATCTCTGTATGGTTCCCCTTGTCTTCGCGATCG
TATTTTCCCAGTGTGACGGCCTAACAGCCAAGTGGTTGGAAAGTGAAGTC
CGAGCAATCACTAAGGAGAAGGCGGTGCTAGTTTCGGCAATAGAGAGGGA
AGGAGACGAAAAGCGAGTGAGATGCCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig10501:1092..4119+

>mRNA_S-dermatodea_contig10501.358.1 ID=mRNA_S-dermatodea_contig10501.358.1|Name=mRNA_S-dermatodea_contig10501.358.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1146bp|location=Sequence derived from alignment at S-dermatodea_contig10501:1092..4119+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGCCCGAGTTACCTTGGTCCTCCGACAATTCCCTACCCCACCGAACC
GTTGTCCTCCTATCGACCAACGAAACTTGACGCAGTGACACTCTGCAATC
AGGGGAACGCTCGGAGGACAAGGCGATGCGCCCGAGTTACCTTGGTCCTC
CGACAATTCCCTACCCCACCGAACCGTTGTCCTCCTATCGACCAACGAAA
CTTGACGCAGTGACACTCTGCAATCAGGGGAACGCTCGGAGGACAAGGCG
ACCCGAAGGAGGCGTACCTGTAGCTGCTAGGCGTGAGCGAGCTTCCAGGA
GGCGAAGGAAAGGCACTAAGACGCGAATGCCTGTTCCGAAGTGGCTGGTC
TTCACATCTTGGTGGCATACCCGAAGGAGGCGTACCTGTAGCTGCTAGGC
GTGAGCGAGCTTCCAGGAGGCGAAGGAAAGGCACTAAGACGCGAATGCCT
GTTCCGAAGTGGCTGGTCTTCACATCTTGGTGGCATGAAACAACTATCGG
CACGGAAAATGTCATGAACAGAAAGCACGCCTCGATTCGATACAATACCA
GCACGGGAGCCCTCGAGGTGGAGCTGGAAGACGTGCCTATGATTTTTGAG
GTCTCACATGCCACCGGAAGGAAACAACTATCGGCACGGAAAATGTCATG
AACAGAAAGCACGCCTCGATTCGATACAATACCAGCACGGGAGCCCTCGA
GGTGGAGCTGGAAGACGTGCCTATGATTTTTGAGGTCTCACATGCCACCG
GAAGACACGGAAAGATCGAGTTGATCGACGTTCGCGTGGGAGCTCAGATA
TCTATCCTGGGGCGACAGATGCGCCTCATGCAGACACGGAAAGATCGAGT
TGATCGACGTTCGCGTGGGAGCTCAGATATCTATCCTGGGGCGACAGATG
CGCCTCATGCAGTGTGACGGCCTAACAGCCAAGTGGTTGGAAAGTGAAGT
CCGAGCAATCACTAAGGAGAAGGCGGTGCTAGTTTCGGCAATAGAGAGGG
AAGGAGACGAAAAGCGAGTGAGATGCCGCTGTGACGGCCTAACAGCCAAG
TGGTTGGAAAGTGAAGTCCGAGCAATCACTAAGGAGAAGGCGGTGCTAGT
TTCGGCAATAGAGAGGGAAGGAGACGAAAAGCGAGTGAGATGCCGC
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