mRNA_S-dermatodea_contig10491.346.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10491.346.1
Unique NamemRNA_S-dermatodea_contig10491.346.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10491.346.1 vs. uniprot
Match: D8LKM8_ECTSI (TAZ-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKM8_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.200e-29
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:    1 PREVRYECVACRESYTATVAGNPWWLLVRQECPACRKVQIPRVDILNPTNNVEGHIAFLTE 183
            PREVRY+C AC  SY ATV+GNPWWLLVRQECP C K+QIPRVDILNPTNNVE HIAFLTE
Sbjct:  328 PREVRYQCGACAASYAATVSGNPWWLLVRQECPICHKMQIPRVDILNPTNNVESHIAFLTE 388
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BLAST of mRNA_S-dermatodea_contig10491.346.1 vs. uniprot
Match: W7U3G5_9STRA (TAZ-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U3G5_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.070e-16
Identity = 32/60 (53.33%), Postives = 42/60 (70.00%), Query Frame = 1 
Query:    4 REVRYECVACRESYTATVAGNPWWLLVRQECPACRKVQIPRVDILNPTNNVEGHIAFLTE 183
            R+V Y+C  C ESY+A  + NPWW L +QECP C+K+QIPR+DI  P N ++ H A L E
Sbjct:  439 RQVEYQCGVCAESYSAAASLNPWWALEKQECPQCKKLQIPRIDINLPANTMDYHPALLAE 498
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BLAST of mRNA_S-dermatodea_contig10491.346.1 vs. uniprot
Match: A0A6H5KT72_9PHAE (TAZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT72_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.370e-14
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:   73 WLLVRQECPACRKVQIPRVDILNPTNNVEGHIAFLTE 183
            WLLVRQECP C K+QIPRVDILNPTNNVE HIAFLTE
Sbjct:  477 WLLVRQECPTCHKMQIPRVDILNPTNNVESHIAFLTE 513
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10491.346.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LKM8_ECTSI2.200e-2983.61TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
W7U3G5_9STRA6.070e-1653.33TAZ-type domain-containing protein n=3 Tax=Monodop... [more]
A0A6H5KT72_9PHAE1.370e-1489.19TAZ-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10491contigS-dermatodea_contig10491:1088..1273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue2.3e-24
Seed eggNOG ortholog2880.D8LKM8
EggNOG free text desc.TAZ zinc finger
EggNOG OGs2BJCE@1,2S1FW@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924159.5227523-CDS-S-dermatodea_contig10491:1087..12731622924159.5227523-CDS-S-dermatodea_contig10491:1087..1273Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10491 1088..1273 -
1694079058.294719-CDS-S-dermatodea_contig10491:1087..12731694079058.294719-CDS-S-dermatodea_contig10491:1087..1273Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10491 1088..1273 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10491.346.1prot_S-dermatodea_contig10491.346.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10491 1088..1273 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10491.346.1

>prot_S-dermatodea_contig10491.346.1 ID=prot_S-dermatodea_contig10491.346.1|Name=mRNA_S-dermatodea_contig10491.346.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=62bp
PREVRYECVACRESYTATVAGNPWWLLVRQECPACRKVQIPRVDILNPTN
NVEGHIAFLTEA
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mRNA from alignment at S-dermatodea_contig10491:1088..1273-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10491.346.1 ID=mRNA_S-dermatodea_contig10491.346.1|Name=mRNA_S-dermatodea_contig10491.346.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at S-dermatodea_contig10491:1088..1273- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCGGGAGGTGCGGTACGAGTGCGTGGCTTGCCGGGAGAGCTACACGGC
GACGGTCGCGGGGAACCCGTGGTGGCTCCTGGTGAGGCAGGAGTGCCCGG
CGTGTCGGAAGGTGCAGATACCTCGGGTGGACATCCTGAACCCCACCAAC
AATGTGGAGGGGCACATCGCCTTTCTCACGGAGGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10491:1088..1273-

>mRNA_S-dermatodea_contig10491.346.1 ID=mRNA_S-dermatodea_contig10491.346.1|Name=mRNA_S-dermatodea_contig10491.346.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at S-dermatodea_contig10491:1088..1273- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGCGGGAGGTGCGGTACGAGTGCGTGGCTTGCCGGGAGAGCTACACGGC
GACGGTCGCGGGGAACCCGTGGTGGCTCCTGGTGAGGCAGGAGTGCCCGG
CGTGTCGGAAGGTGCAGATACCTCGGGTGGACATCCTGAACCCCACCAAC
AATGTGGAGGGGCACATCGCCTTTCTCACGGAGGCGCCGCGGGAGGTGCG
GTACGAGTGCGTGGCTTGCCGGGAGAGCTACACGGCGACGGTCGCGGGGA
ACCCGTGGTGGCTCCTGGTGAGGCAGGAGTGCCCGGCGTGTCGGAAGGTG
CAGATACCTCGGGTGGACATCCTGAACCCCACCAACAATGTGGAGGGGCA
CATCGCCTTTCTCACGGAGGCG
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