mRNA_S-dermatodea_contig10472.332.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10472.332.1
Unique NamemRNA_S-dermatodea_contig10472.332.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10472.332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10472contigS-dermatodea_contig10472:3143..3915 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size349
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924158.6794226-CDS-S-dermatodea_contig10472:3142..32261622924158.6794226-CDS-S-dermatodea_contig10472:3142..3226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10472 3143..3226 +
1694079057.8127277-CDS-S-dermatodea_contig10472:3142..32261694079057.8127277-CDS-S-dermatodea_contig10472:3142..3226Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10472 3143..3226 +
1622924158.6891265-CDS-S-dermatodea_contig10472:3650..39141622924158.6891265-CDS-S-dermatodea_contig10472:3650..3914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10472 3651..3914 +
1694079057.8230467-CDS-S-dermatodea_contig10472:3650..39141694079057.8230467-CDS-S-dermatodea_contig10472:3650..3914Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10472 3651..3914 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10472.332.1prot_S-dermatodea_contig10472.332.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10472 3143..3914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10472.332.1

>prot_S-dermatodea_contig10472.332.1 ID=prot_S-dermatodea_contig10472.332.1|Name=mRNA_S-dermatodea_contig10472.332.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=116bp
SFDKLIKSILGSDSEELLSDSEVDASEADEHKFTLHDMVAEMSTETIKEE
MAAGQAADDRSGKNEIQGILKETGGCAIDPRNPGPDFDSSCLDDKIPGAT
HDGSAKYTLENDKESF
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mRNA from alignment at S-dermatodea_contig10472:3143..3915+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10472.332.1 ID=mRNA_S-dermatodea_contig10472.332.1|Name=mRNA_S-dermatodea_contig10472.332.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=773bp|location=Sequence derived from alignment at S-dermatodea_contig10472:3143..3915+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCTTCGATAAATTAATCAAGAGTATCCTCGGCTCGGACTCGGAAGAGCT
GTTATCGGACTCTGAGGTGGACGCTTCGGAGGCGGTGAGCTCTTCCTGCG
TTTCAGTCGCCCAGCCAACGTGTCTATTTGTGGGGTAACGCGCGTTCGTT
GTACAACGCATCTATCTAGACATCGCGTACAGGGAATGCTATGTGGGGAT
GTCGCCGAGGTCTTGATCAAGTTTCCGCGCGAAGCGAAGCGGGTGGTGCC
ACTCAGCGTTTCGGGCGACAATCGTTTTCCTTCGATACTACATCCAGCGA
CTAGGTGGTAGTGCCGGGCGGTACGACGGTGCTGTAGATTTGTTTTCCTC
GCGATGTCTGCTGTAGATTTGTTTTCCCTCGCGATGTCATGGCAATAGGA
CCGTAGCATTTGGTGGTCGAGAAAATCTTGTAGCAAGCATACCAGCATGC
CCGTGGTCTCACCCGTCTTCCCTAATCCAATTTGATTATCACTATCCACC
ACTCGCAGGATGAACACAAATTCACCCTACACGATATGGTCGCCGAAATG
TCGACGGAGACAATCAAAGAAGAGATGGCTGCGGGCCAAGCTGCAGACGA
CAGGTCGGGAAAGAACGAAATCCAGGGAATACTGAAGGAGACAGGCGGTT
GTGCGATCGATCCACGAAATCCCGGCCCCGACTTCGACAGCAGCTGTCTA
GACGACAAGATCCCCGGCGCGACGCACGATGGTTCTGCCAAGTACACGCT
GGAGAACGACAAGGAAAGCTTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10472:3143..3915+

>mRNA_S-dermatodea_contig10472.332.1 ID=mRNA_S-dermatodea_contig10472.332.1|Name=mRNA_S-dermatodea_contig10472.332.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at S-dermatodea_contig10472:3143..3915+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCTTCGATAAATTAATCAAGAGTATCCTCGGCTCGGACTCGGAAGAGCT
GTTATCGGACTCTGAGGTGGACGCTTCGGAGGCGAGCTTCGATAAATTAA
TCAAGAGTATCCTCGGCTCGGACTCGGAAGAGCTGTTATCGGACTCTGAG
GTGGACGCTTCGGAGGCGGATGAACACAAATTCACCCTACACGATATGGT
CGCCGAAATGTCGACGGAGACAATCAAAGAAGAGATGGCTGCGGGCCAAG
CTGCAGACGACAGGTCGGGAAAGAACGAAATCCAGGGAATACTGAAGGAG
ACAGGCGGTTGTGCGATCGATCCACGAAATCCCGGCCCCGACTTCGACAG
CAGCTGTCTAGACGACAAGATCCCCGGCGCGACGCACGATGGTTCTGCCA
AGTACACGCTGGAGAACGACAAGGAAAGCTTCGATGAACACAAATTCACC
CTACACGATATGGTCGCCGAAATGTCGACGGAGACAATCAAAGAAGAGAT
GGCTGCGGGCCAAGCTGCAGACGACAGGTCGGGAAAGAACGAAATCCAGG
GAATACTGAAGGAGACAGGCGGTTGTGCGATCGATCCACGAAATCCCGGC
CCCGACTTCGACAGCAGCTGTCTAGACGACAAGATCCCCGGCGCGACGCA
CGATGGTTCTGCCAAGTACACGCTGGAGAACGACAAGGAAAGCTTC
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