mRNA_S-dermatodea_contig10368.271.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10368.271.1
Unique NamemRNA_S-dermatodea_contig10368.271.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10368.271.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 301 bits (770), Expect = 1.300e-90
Identity = 161/250 (64.40%), Postives = 193/250 (77.20%), Query Frame = 1 
Query:  127 GSGPVRKVAQAKRGNILYSSTKILGRLVEPWDDKSRKWIESKRELGGERAEEGEGTAPRAKSEPSGTTSIPVTAQLLGDGLCADQGVGNIEIVEGVYFKRTKLGSLKYYYNKSYMFDPKNIGVVPGETRVRCGDTVRLVKSVDHGQFTVGGLESPVTQWDVLENREDEGVTLDTDLRRFIIHLVTTYTVMMGSVVPHLSGTSNVTTGMLWNVNDALCRANASGDGIDAESKMKISELESITERVDTLRNL 876
            G GPVRKVA  +R   LY+STKI+ RLVEPW D SR+W+E KRE GGE+A+E +GT  RA +EP G TSIPV  +LLGDGLC DQG G+IEI +GVY+KR +L +L+YYY+KSY+ DP+NI VV G+TRV+    V +VKSVDHG++T+ G ES +TQW++LE R DEGVTL TDLRRFI+HLVT YTVMMGSVVP L+G   V T MLWN NDA+  AN  GD  D ES MK SEL SI ERVDTLR+L
Sbjct:  174 GGGPVRKVAYKQRPK-LYASTKIIARLVEPWQDGSREWMERKRESGGEKAQERDGTLSRAANEPRGNTSIPVMVKLLGDGLCTDQGKGDIEISDGVYYKRAELRNLQYYYDKSYVLDPQNIWVVFGQTRVKIDGGVHVVKSVDHGKYTLEGRESTITQWELLEKRCDEGVTLYTDLRRFILHLVTKYTVMMGSVVPALTG---VLTVMLWNPNDAV--ANKCGDDTDPESNMKTSELMSIKERVDTLRDL 417
[Close]
BLAST of mRNA_S-dermatodea_contig10368.271.1 vs. uniprot
Match: D8LJ27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ27_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.450e-66
Identity = 124/211 (58.77%), Postives = 153/211 (72.51%), Query Frame = 1 
Query:  286 EGTAPRAKSEPSGTTSIPVTAQLLGDGLCADQGVGNIEIVEGVYFKRTKLGSLKYYYNKSYMFDPKNIGVVPGETRVRCGDTVRLVKSVDHGQFTVGGLESPVTQWDVLENREDEGVTLDTDLRRFIIHLVTTYTVMMGSVVPHLSGTSNVTTGMLWNVNDALCRANASGDGIDAESKMKISELESITERVDTLRNLTLTVFTNIPIEDSL 918
            E    + ++E    +S P   +   +G   + G G+IEI +GVY+KR +L +L+YYY+KSY FDPKNIGVV  ET V+    +  VKSVDHG++T+ G ES +TQW++LENR DE VTLDTDLRRFI+HLVT YTVMMGSVVP LSG   V TGMLWN NDA+ RA+ SGD  D E KMKISEL SI  RVDTLR+L+L VFT IP+E +L
Sbjct:   71 EANQKKRQAELEAASSTPHVTERQEEGSDGN-GEGDIEISDGVYYKRAELRTLQYYYDKSYAFDPKNIGVVLSETGVKIDSRIHAVKSVDHGKYTLEGRESRITQWELLENRCDERVTLDTDLRRFILHLVTKYTVMMGSVVPALSG---VVTGMLWNPNDAIDRASRSGDDTDPERKMKISELMSIKVRVDTLRDLSLAVFTKIPVEATL 277
[Close]
BLAST of mRNA_S-dermatodea_contig10368.271.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 5.370e-42
Identity = 110/269 (40.89%), Postives = 158/269 (58.74%), Query Frame = 1 
Query:  130 SGPVRKVAQAKRGNILYSSTKILGRLVEPW--DDKSRKWIESKRELGGERAEEGEGTAPRAKSEP-SGTTSIPVTAQLLGDGLCADQGVGNIEIVEGVYFKRTKLGSLKYYYNKSYMFDPKNIGVVPGETRVRCGDTVRLVKSVDHGQFTVGGLESPVTQWDVLENREDEGVTLDTDLRRFIIHLVTTYTVMMGSVVPHL--SGTSNVTTGMLWNVNDALCRANASGDGIDAESKMKISELESITERVDTLRNLTLTVFTNIPIEDSLP 921
            +G VRK    K   ++    K   R++E     D+   ++E+ R    E+A+  E T PR  +EP S  TSIP+ A+LL  GLC D  +  IEI++GV+FKR  L +L+ Y+N  Y+FDP++IGV  G T+V   D   +V+S D G++++    S + QW VLENR D GVTL+ + RRFIIHLVTTY  MM  VVP +    T ++   M+WN  +A         G    +K +  EL+ I  RV+TLR+LTL +FT   ++D+LP
Sbjct:  668 AGNVRKRRVRKPARVV---AKEYARILEDVLNSDEMGTFVEASRAKAAEKAKHFENTCPRTPNEPPSSITSIPLIAKLLTRGLC-DDPLDGIEILDGVFFKRAALDALERYFNWEYVFDPESIGVFLGTTKVGIDDEEFVVESFDCGEYSLSD-GSVMQQWGVLENRTDGGVTLEDEQRRFIIHLVTTYVNMMAHVVPVVIEESTPSMVKDMMWNPVEA---------GKRETNKERREELDQIINRVNTLRDLTLRIFTGAAVKDTLP 922
[Close]
BLAST of mRNA_S-dermatodea_contig10368.271.1 vs. uniprot
Match: D7FQV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV3_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 2.580e-32
Identity = 66/122 (54.10%), Postives = 84/122 (68.85%), Query Frame = 1 
Query:  319 SGTTSIPVTAQLLGDGLCADQGVGNIEIVEGVYFKRTKLGSLKYYYNKSYMFDPKNIGVVPGETRVRCGDTVRLVKSVDHGQFTVGGLESPVTQWDVLENREDEGVTLDTDLRRFIIHLVTT 684
            S T+ +    + + DG     G  +IEI EGVY KRT++  L+YYY+KSYMFDPK+IGVV GET V     V +VKSVD G++ + G +S +TQW++L NR  EGVTLDTDLRRFI HL  T
Sbjct:   85 SSTSHVTERQEKVSDG----NGEDDIEIFEGVYHKRTEIRHLRYYYDKSYMFDPKSIGVVFGETSVEIDGGVHVVKSVDRGKYALEGPDSTITQWELLNNRCGEGVTLDTDLRRFITHLTDT 202
[Close]
BLAST of mRNA_S-dermatodea_contig10368.271.1 vs. uniprot
Match: A0A6H5J7T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7T3_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.090e-6
Identity = 47/121 (38.84%), Postives = 61/121 (50.41%), Query Frame = 1 
Query:  565 FTVGGLESP--VTQWDVLENREDEGVTLDTDLRRFIIHLVTTYTVMMGSVVPHLSGTSNVTTGMLWNVNDALCRANASGDGIDAESKMKISELESITERVDTLRNLTLTVFTNIPIEDSLP 921
             T G  + P  + QW +LE R D  VTL+ + RRF+IHLVTTY  M+  VVP                      AN  G       K K  EL+ I  RV+TLR+L L VFT+  ++D+LP
Sbjct:  186 LTPGLCDDPGIMHQWGLLEKRTDGVVTLEAEQRRFVIHLVTTYVNMITHVVP-------------------ARLANMRG-------KRK-EELDQIINRVNTLRDLMLRVFTDAAVKDTLP 279
[Close]
BLAST of mRNA_S-dermatodea_contig10368.271.1 vs. uniprot
Match: A0A6H5JFX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFX7_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 2.840e-5
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:  772 LCRANASGDGIDAESKMKISELESITERVDTLRNLTLTVFTNIPIEDSL 918
            L RAN SG G D ES MK SEL SI  RVDTLR+++L VFT I I+ +L
Sbjct:   89 LRRANRSGGGTDPESNMKTSELMSIKVRVDTLRDVSLAVFTKILIQSTL 137
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10368.271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE1.300e-9064.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ27_ECTSI1.450e-6658.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LPM1_ECTSI5.370e-4240.89PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D7FQV3_ECTSI2.580e-3254.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J7T3_9PHAE1.090e-638.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFX7_9PHAE2.840e-561.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10368contigS-dermatodea_contig10368:2102..3022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue5.8e-17
Seed eggNOG ortholog2880.D7FHJ0
EggNOG OGs2EVBK@1,2SXC2@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size921
Cds size903
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.7908945-UTR-S-dermatodea_contig10368:2101..21191622924153.7908945-UTR-S-dermatodea_contig10368:2101..2119Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10368 2102..2119 +
1694079054.3950849-UTR-S-dermatodea_contig10368:2101..21191694079054.3950849-UTR-S-dermatodea_contig10368:2101..2119Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig10368 2102..2119 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.8041954-CDS-S-dermatodea_contig10368:2119..30221622924153.8041954-CDS-S-dermatodea_contig10368:2119..3022Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10368 2120..3022 +
1694079054.4087162-CDS-S-dermatodea_contig10368:2119..30221694079054.4087162-CDS-S-dermatodea_contig10368:2119..3022Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10368 2120..3022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10368.271.1prot_S-dermatodea_contig10368.271.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10368 2120..3022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10368.271.1

>prot_S-dermatodea_contig10368.271.1 ID=prot_S-dermatodea_contig10368.271.1|Name=mRNA_S-dermatodea_contig10368.271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=301bp
MDVDDVDGDFGGGGSGDDGGSDDDGGSDKVGGGGSGGSGPVRKVAQAKRG
NILYSSTKILGRLVEPWDDKSRKWIESKRELGGERAEEGEGTAPRAKSEP
SGTTSIPVTAQLLGDGLCADQGVGNIEIVEGVYFKRTKLGSLKYYYNKSY
MFDPKNIGVVPGETRVRCGDTVRLVKSVDHGQFTVGGLESPVTQWDVLEN
REDEGVTLDTDLRRFIIHLVTTYTVMMGSVVPHLSGTSNVTTGMLWNVND
ALCRANASGDGIDAESKMKISELESITERVDTLRNLTLTVFTNIPIEDSL
P
back to top

mRNA from alignment at S-dermatodea_contig10368:2102..3022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10368.271.1 ID=mRNA_S-dermatodea_contig10368.271.1|Name=mRNA_S-dermatodea_contig10368.271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=921bp|location=Sequence derived from alignment at S-dermatodea_contig10368:2102..3022+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GACAACGGTCTCGAGGCTATGGACGTTGACGACGTTGATGGCGACTTCGG
TGGCGGTGGCAGCGGTGACGACGGTGGCAGCGACGACGACGGTGGCAGCG
ACAAGGTTGGTGGCGGTGGCAGTGGTGGCAGCGGCCCCGTGCGGAAGGTG
GCGCAGGCGAAAAGGGGAAACATACTTTATTCTTCTACCAAAATACTCGG
ACGCCTGGTTGAGCCGTGGGATGACAAAAGTCGCAAGTGGATAGAAAGCA
AGAGAGAGTTGGGTGGTGAAAGAGCGGAAGAGGGCGAGGGTACGGCCCCC
CGTGCTAAAAGTGAACCCAGTGGGACCACGTCGATCCCGGTCACGGCCCA
ACTGCTTGGCGATGGTCTGTGTGCTGACCAGGGAGTGGGTAACATCGAGA
TCGTTGAAGGGGTGTACTTCAAGCGTACCAAACTTGGGAGTTTGAAGTAT
TACTACAACAAGTCATACATGTTCGACCCGAAGAATATCGGGGTGGTGCC
CGGTGAGACGCGTGTCAGGTGCGGCGACACGGTCCGCTTGGTGAAATCAG
TCGATCACGGCCAATTCACAGTGGGCGGTCTGGAATCCCCAGTCACGCAG
TGGGATGTCCTGGAAAACCGGGAGGACGAGGGGGTGACACTCGACACCGA
CCTCCGGCGGTTCATCATTCATCTGGTGACAACGTATACGGTCATGATGG
GTTCGGTTGTGCCGCATCTCAGCGGCACCAGCAACGTGACAACCGGGATG
CTCTGGAACGTCAACGATGCCTTGTGCAGAGCTAATGCGAGTGGTGACGG
CATCGACGCAGAGAGCAAGATGAAGATCAGCGAGCTGGAGTCGATAACAG
AGCGTGTGGATACTCTGAGGAACCTGACGCTGACTGTCTTCACCAACATC
CCCATCGAAGACAGCCTGCCT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10368:2102..3022+

>mRNA_S-dermatodea_contig10368.271.1 ID=mRNA_S-dermatodea_contig10368.271.1|Name=mRNA_S-dermatodea_contig10368.271.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1806bp|location=Sequence derived from alignment at S-dermatodea_contig10368:2102..3022+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGTTGACGACGTTGATGGCGACTTCGGTGGCGGTGGCAGCGGTGA
CGACGGTGGCAGCGACGACGACGGTGGCAGCGACAAGGTTGGTGGCGGTG
GCAGTGGTGGCAGCGGCCCCGTGCGGAAGGTGGCGCAGGCGAAAAGGGGA
AACATACTTTATTCTTCTACCAAAATACTCGGACGCCTGGTTGAGCCGTG
GGATGACAAAAGTCGCAAGTGGATAGAAAGCAAGAGAGAGTTGGGTGGTG
AAAGAGCGGAAGAGGGCGAGGGTACGGCCCCCCGTGCTAAAAGTGAACCC
AGTGGGACCACGTCGATCCCGGTCACGGCCCAACTGCTTGGCGATGGTCT
GTGTGCTGACCAGGGAGTGGGTAACATCGAGATCGTTGAAGGGGTGTACT
TCAAGCGTACCAAACTTGGGAGTTTGAAGTATTACTACAACAAGTCATAC
ATGTTCGACCCGAAGAATATCGGGGTGGTGCCCGGTGAGACGCGTGTCAG
GTGCGGCGACACGGTCCGCTTGGTGAAATCAGTCGATCACGGCCAATTCA
CAGTGGGCGGTCTGGAATCCCCAGTCACGCAGTGGGATGTCCTGGAAAAC
CGGGAGGACGAGGGGGTGACACTCGACACCGACCTCCGGCGGTTCATCAT
TCATCTGGTGACAACGTATACGGTCATGATGGGTTCGGTTGTGCCGCATC
TCAGCGGCACCAGCAACGTGACAACCGGGATGCTCTGGAACGTCAACGAT
GCCTTGTGCAGAGCTAATGCGAGTGGTGACGGCATCGACGCAGAGAGCAA
GATGAAGATCAGCGAGCTGGAGTCGATAACAGAGCGTGTGGATACTCTGA
GGAACCTGACGCTGACTGTCTTCACCAACATCCCCATCGAAGACAGCCTG
CCTATGGACGTTGACGACGTTGATGGCGACTTCGGTGGCGGTGGCAGCGG
TGACGACGGTGGCAGCGACGACGACGGTGGCAGCGACAAGGTTGGTGGCG
GTGGCAGTGGTGGCAGCGGCCCCGTGCGGAAGGTGGCGCAGGCGAAAAGG
GGAAACATACTTTATTCTTCTACCAAAATACTCGGACGCCTGGTTGAGCC
GTGGGATGACAAAAGTCGCAAGTGGATAGAAAGCAAGAGAGAGTTGGGTG
GTGAAAGAGCGGAAGAGGGCGAGGGTACGGCCCCCCGTGCTAAAAGTGAA
CCCAGTGGGACCACGTCGATCCCGGTCACGGCCCAACTGCTTGGCGATGG
TCTGTGTGCTGACCAGGGAGTGGGTAACATCGAGATCGTTGAAGGGGTGT
ACTTCAAGCGTACCAAACTTGGGAGTTTGAAGTATTACTACAACAAGTCA
TACATGTTCGACCCGAAGAATATCGGGGTGGTGCCCGGTGAGACGCGTGT
CAGGTGCGGCGACACGGTCCGCTTGGTGAAATCAGTCGATCACGGCCAAT
TCACAGTGGGCGGTCTGGAATCCCCAGTCACGCAGTGGGATGTCCTGGAA
AACCGGGAGGACGAGGGGGTGACACTCGACACCGACCTCCGGCGGTTCAT
CATTCATCTGGTGACAACGTATACGGTCATGATGGGTTCGGTTGTGCCGC
ATCTCAGCGGCACCAGCAACGTGACAACCGGGATGCTCTGGAACGTCAAC
GATGCCTTGTGCAGAGCTAATGCGAGTGGTGACGGCATCGACGCAGAGAG
CAAGATGAAGATCAGCGAGCTGGAGTCGATAACAGAGCGTGTGGATACTC
TGAGGAACCTGACGCTGACTGTCTTCACCAACATCCCCATCGAAGACAGC
CTGCCT
back to top