mRNA_S-dermatodea_contig1036.266.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1036.266.1
Unique NamemRNA_S-dermatodea_contig1036.266.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1036.266.1 vs. uniprot
Match: A0A191S3S9_9BETA (Replication origin-binding protein n=1 Tax=Macaca nemestrina herpesvirus 7 TaxID=1846169 RepID=A0A191S3S9_9BETA)

HSP 1 Score: 55.1 bits (131), Expect = 4.390e-6
Identity = 39/145 (26.90%), Postives = 74/145 (51.03%), Query Frame = 1 
Query:    4 KEYVQSLIGIPERCVMLCASMGSGKTYAIIEYIRSLPPTESVAWMVPRTAMASCIMGRLIDLGFKSY-------KETIHHKRLVIEYESVGKVNYPHGNIVLDECRSLLKSAVARKTNGDNLLKNLD-TLISLCKQSTKTFLVDA 414
            K+ + S     E+  ++ A MGSGKT A+I+++ ++P TESV  +  R   A  ++ R        +          I  ++L+I+ ES+ +V+  +  ++LDE  S++K   ++       +K +D   ++L K ST+   +DA
Sbjct:   34 KKSMVSFKTFSEKIKIIRAPMGSGKTSALIDFLNTIPDTESVLVISCRKTFAVELLNRFKKHNLNDFYLYSDIKDRQIKKRKLIIQVESLHRVSENYDVLILDEIMSIIKQFYSKTMIK---IKEVDFKFLTLVKNSTQIVAMDA 175
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BLAST of mRNA_S-dermatodea_contig1036.266.1 vs. uniprot
Match: OBP_HHV7J (Replication origin-binding protein n=3 Tax=Human betaherpesvirus 7 TaxID=10372 RepID=OBP_HHV7J)

HSP 1 Score: 51.2 bits (121), Expect = 9.590e-5
Identity = 40/134 (29.85%), Postives = 74/134 (55.22%), Query Frame = 1 
Query:   37 ERCVMLCASMGSGKTYAIIEYIRSLPPTESVAWMVPRTAMASCIMGRLI--DLG-FKSYKET----IHHKRLVIEYESVGKVNYPHGNIVLDECRSLLKSAVARKTNGDNLLKNLDT-LISLCKQSTKTFLVDA 414
            E+  ++ A MGSGKT A+IE+++++   +SV  +  R   A+ ++ R    DL  F  Y E     I+  +L+I+ ES+ +V   +  ++LDE  S++K   ++       +K +D  L++L + ST+   +DA
Sbjct:   45 EQIKIIRAPMGSGKTSALIEFLKTVSYIDSVLVISCRKTFAAELLNRFKKNDLNDFYLYSEIKERQINKNKLIIQVESLHRVTRNYHVLILDEIMSIIKQFYSKTMTK---VKEVDAKLLTLIRNSTQIVAMDA 175
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1036.266.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A191S3S9_9BETA4.390e-626.90Replication origin-binding protein n=1 Tax=Macaca ... [more]
OBP_HHV7J9.590e-529.85Replication origin-binding protein n=3 Tax=Human b... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1036contigS-dermatodea_contig1036:18903..19316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionorigin-binding protein
Ec32 orthologEc-05_007030.2
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924153.3651106-CDS-S-dermatodea_contig1036:18902..193161622924153.3651106-CDS-S-dermatodea_contig1036:18902..19316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1036 18903..19316 +
1694079054.140603-CDS-S-dermatodea_contig1036:18902..193161694079054.140603-CDS-S-dermatodea_contig1036:18902..19316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1036 18903..19316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1036.266.1prot_S-dermatodea_contig1036.266.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1036 18903..19316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1036.266.1

>prot_S-dermatodea_contig1036.266.1 ID=prot_S-dermatodea_contig1036.266.1|Name=mRNA_S-dermatodea_contig1036.266.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=138bp
LKEYVQSLIGIPERCVMLCASMGSGKTYAIIEYIRSLPPTESVAWMVPRT
AMASCIMGRLIDLGFKSYKETIHHKRLVIEYESVGKVNYPHGNIVLDECR
SLLKSAVARKTNGDNLLKNLDTLISLCKQSTKTFLVDA
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mRNA from alignment at S-dermatodea_contig1036:18903..19316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1036.266.1 ID=mRNA_S-dermatodea_contig1036.266.1|Name=mRNA_S-dermatodea_contig1036.266.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at S-dermatodea_contig1036:18903..19316+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTAAAGGAGTACGTCCAATCATTGATCGGTATACCAGAGCGGTGCGTCAT
GCTATGCGCGTCAATGGGCTCAGGGAAGACGTATGCGATCATTGAATACA
TTCGGAGCTTACCGCCAACGGAATCGGTGGCATGGATGGTGCCCAGAACT
GCCATGGCCTCGTGTATCATGGGAAGGTTGATAGATCTAGGTTTCAAATC
ATACAAAGAAACCATACACCACAAACGTCTGGTTATCGAATACGAATCGG
TCGGCAAAGTAAACTACCCTCATGGAAATATTGTGCTGGATGAGTGTCGA
TCGTTGCTGAAATCAGCTGTTGCGCGTAAAACCAATGGTGATAATTTGCT
CAAGAACTTGGACACACTTATATCACTCTGCAAACAGTCTACCAAGACAT
TCCTGGTTGATGCC
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Coding sequence (CDS) from alignment at S-dermatodea_contig1036:18903..19316+

>mRNA_S-dermatodea_contig1036.266.1 ID=mRNA_S-dermatodea_contig1036.266.1|Name=mRNA_S-dermatodea_contig1036.266.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=828bp|location=Sequence derived from alignment at S-dermatodea_contig1036:18903..19316+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTAAAGGAGTACGTCCAATCATTGATCGGTATACCAGAGCGGTGCGTCAT
GCTATGCGCGTCAATGGGCTCAGGGAAGACGTATGCGATCATTGAATACA
TTCGGAGCTTACCGCCAACGGAATCGGTGGCATGGATGGTGCCCAGAACT
GCCATGGCCTCGTGTATCATGGGAAGGTTGATAGATCTAGGTTTCAAATC
ATACAAAGAAACCATACACCACAAACGTCTGGTTATCGAATACGAATCGG
TCGGCAAAGTAAACTACCCTCATGGAAATATTGTGCTGGATGAGTGTCGA
TCGTTGCTGAAATCAGCTGTTGCGCGTAAAACCAATGGTGATAATTTGCT
CAAGAACTTGGACACACTTATATCACTCTGCAAACAGTCTACCAAGACAT
TCCTGGTTGATGCCTTAAAGGAGTACGTCCAATCATTGATCGGTATACCA
GAGCGGTGCGTCATGCTATGCGCGTCAATGGGCTCAGGGAAGACGTATGC
GATCATTGAATACATTCGGAGCTTACCGCCAACGGAATCGGTGGCATGGA
TGGTGCCCAGAACTGCCATGGCCTCGTGTATCATGGGAAGGTTGATAGAT
CTAGGTTTCAAATCATACAAAGAAACCATACACCACAAACGTCTGGTTAT
CGAATACGAATCGGTCGGCAAAGTAAACTACCCTCATGGAAATATTGTGC
TGGATGAGTGTCGATCGTTGCTGAAATCAGCTGTTGCGCGTAAAACCAAT
GGTGATAATTTGCTCAAGAACTTGGACACACTTATATCACTCTGCAAACA
GTCTACCAAGACATTCCTGGTTGATGCC
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