mRNA_S-dermatodea_contig10338.249.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10338.249.1
Unique NamemRNA_S-dermatodea_contig10338.249.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Match: D7FY86_ECTSI (Meiotic recombination protein DMC1/LIM15 homolog, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY86_ECTSI)

HSP 1 Score: 309 bits (792), Expect = 1.680e-104
Identity = 163/192 (84.90%), Postives = 173/192 (90.10%), Query Frame = 1 
Query:    1 QSVDELTKAGIKMAEINKLKEAHIATVGAVLATPTKARCLARTLILLTIRGFSEATVGKVHAAAAKVDRSGSSGVFQTGLQCRVARQKVIKVHTGSKQLDALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPSETLENVFVTRVFNHEQQIE 576
            Q V+ELT AGIKMAEINKLKEA++ATVGAVLATPTK         LLTIRGFS+ATV K+  AAAKVD SGSSG+F+TGLQCR AR+KVIKVHTGSKQLDALLGGGIET SITEFFGEFRSGKTQL HTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDP+ETLENV VTRVFNHEQQI+
Sbjct:   30 QCVEELTNAGIKMAEINKLKEANLATVGAVLATPTKR--------LLTIRGFSDATVAKIQLAAAKVDTSGSSGMFKTGLQCRQAREKVIKVHTGSKQLDALLGGGIETGSITEFFGEFRSGKTQLCHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPTETLENVIVTRVFNHEQQID 213
[Close]
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Match: A0A1J4KIK7_9EUKA (Meiotic recombination protein DMC1 like protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4KIK7_9EUKA)

HSP 1 Score: 194 bits (493), Expect = 4.790e-58
Identity = 107/191 (56.02%), Postives = 133/191 (69.63%), Query Frame = 1 
Query:    4 SVDELTKAGIKMAEINKLKEAHIATVGAVLATPTKARCLARTLILLTIRGFSEATVGKVHAAAAKVDRSGSSGVFQTGLQCRVARQKVIKVHTGSKQLDALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPSETLENVFVTRVFNHEQQIE 576
            S+++L +AGI  A+I KLKEA I TVGAVL   TK R       L  ++G S+A V K+ AAA  +D S S   F +G +C   RQ+VI + TGS +LD LLGGGIE+ SITE FGEFR+GKTQL HTLCVTSQL    GG  G+VVY+DTEG FRPER+  IA RFG+DP+E L+N+   R F HEQQ++
Sbjct:   22 SIEKLVQAGINAADIKKLKEAGICTVGAVLME-TKKR-------LANVKGISDAKVDKIIAAATSLDTSFS---FMSGNECLNRRQRVIHITTGSSELDKLLGGGIESMSITEVFGEFRTGKTQLCHTLCVTSQLPINQGGGAGKVVYIDTEGTFRPERIPTIAARFGVDPNEVLDNILYARAFTHEQQMQ 201
[Close]
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Match: A0A835YPZ9_9STRA (DMC1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPZ9_9STRA)

HSP 1 Score: 188 bits (478), Expect = 1.120e-55
Identity = 103/191 (53.93%), Postives = 134/191 (70.16%), Query Frame = 1 
Query:    7 VDELTKAGIKMAEINKLKEAHIATVGAVLATPTKARCLARTLILLTIRGFSEATVGKVHAAAAKVD-RSGSSGVFQTGLQCRVARQKVIKVHTGSKQLDALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPSETLENVFVTRVFNHEQQIE 576
            +++L K  I  A+I KLKE  IATVG +   P K         L  IRGFSE  V K+   A KVD R+G   +F++G++ R  R+ VIK+ TGS  LD +LGGG+ET SITEF+GEFR+GKTQ+MHTL VT+QL  +SGG  GRVV++DTE NFRPER+E IAERFG+D +E LEN+F  +  +HEQQ++
Sbjct:   31 IEQLAKHAINAADIQKLKEQGIATVGMLFQCPLKT--------LHDIRGFSETKVAKILETARKVDPRAGI--IFRSGIEARDERRNVIKITTGSAGLDGILGGGVETGSITEFYGEFRTGKTQMMHTLAVTAQLDIQSGGGAGRVVFIDTENNFRPERIENIAERFGIDGNEVLENIFHCQPQSHEQQMD 211
[Close]
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Match: A0A482S2G5_9ARCH (RECA_2 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S2G5_9ARCH)

HSP 1 Score: 181 bits (460), Expect = 2.270e-55
Identity = 92/166 (55.42%), Postives = 125/166 (75.30%), Query Frame = 1 
Query:   76 TVGAVLATPTKARCLARTLILLTIRGFSEATVGKVHAAAAKVDRSGSSGVFQTGLQCRVARQKVIKVHTGSKQLDALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPSETLENVFVTRVFNHEQQI 573
            TVG+VL   T+         LLTI+G +EA V K+  AA K+D  G+  +F+TG++ +  R+ ++ + TG+  LD +LGGGIETSSITE FGEFR+GKTQL HTLCVT+QLS +  G +G+V+Y+DTEGNFRPER+E+IAERFGLD  +TL+N+ V RVF+HE+Q+
Sbjct:    2 TVGSVLQCATRE--------LLTIKGITEARVEKIKEAAKKLDLRGN--MFKTGVEVKEKRKSIVHITTGATSLDKILGGGIETSSITELFGEFRTGKTQLSHTLCVTTQLSFDMHGGQGKVIYLDTEGNFRPERIESIAERFGLDAEQTLDNIIVCRVFSHEEQM 157
[Close]
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Match: W7TD93_9STRA (Dna repair protein DMC1 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TD93_9STRA)

HSP 1 Score: 183 bits (465), Expect = 3.240e-55
Identity = 96/184 (52.17%), Postives = 127/184 (69.02%), Query Frame = 1 
Query:    4 SVDELTKAGIKMAEINKLKEAHIATVGAVLATPTKARCLARTLILLTIRGFSEATVGKVHAAAAKVDRSGSSGVFQTGLQCRVARQKVIKVHTGSKQLDALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPSETLENVFVTRVF 555
            +V EL K G+  A+I KL EA I+T G V   P K        +LL I+GFSEA V K+ ++A K+   G+S  F+TG + R  R++ IK+ TG+K  DA+LGGG+E+ SITE +GEFR+GKTQL HTL VT QL  + GG +G+ +Y+DTEGNFRPER+E IAERFGLD   TL+N+ V R +
Sbjct:    9 NVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLK--------VLLAIKGFSEAKVEKIRSSARKLT-GGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIAERFGLDADATLDNIIVARAY 183
[Close]
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Match: A0A4D9CQI8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CQI8_9STRA)

HSP 1 Score: 186 bits (473), Expect = 6.630e-55
Identity = 98/191 (51.31%), Postives = 131/191 (68.59%), Query Frame = 1 
Query:    4 SVDELTKAGIKMAEINKLKEAHIATVGAVLATPTKARCLARTLILLTIRGFSEATVGKVHAAAAKVDRSGSSGVFQTGLQCRVARQKVIKVHTGSKQLDALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPSETLENVFVTRVFNHEQQIE 576
            +V EL K G+  A+I KL EA I+T G V   P K        +LL I+GFSEA V K+ ++A K+   G+S  F+TG + R  R++ IK+ TG+K  DA+LGGG+E+ SITE +GEFR+GKTQL HTL VT QL  + GG +G+ +Y+DTEGNFRPER+E IA+RFGLD   TL+N+ V R +  +QQ E
Sbjct:   32 NVSELQKLGVNAADIAKLVEAGISTAGMVCKVPLK--------VLLAIKGFSEAKVEKIRSSARKLT-GGTSHPFRTGTEVREQRKRCIKITTGAKTFDAILGGGVESGSITEAYGEFRTGKTQLSHTLAVTCQLGFDQGGGQGKCIYLDTEGNFRPERIEKIADRFGLDADATLDNIIVARAYASDQQCE 213
[Close]
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Match: A2FY08_TRIVA (Meiotic recombination protein DMC1/LIM15 homolog, putative n=2 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2FY08_TRIVA)

HSP 1 Score: 180 bits (456), Expect = 1.810e-52
Identity = 97/191 (50.79%), Postives = 128/191 (67.02%), Query Frame = 1 
Query:    4 SVDELTKAGIKMAEINKLKEAHIATVGAVLATPTKARCLARTLILLTIRGFSEATVGKVHAAAAKVDRSGSSGVFQTGLQCRVARQKVIKVHTGSKQLDALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPSETLENVFVTRVFNHEQQIE 576
            S+++L +AGI +A+I KLKEA I TVGAVL    K         L  ++G S+A V K+ AAA  ++    S  F +G  C   R KVI++ +GS +LD LLGGG+E+ SITE FGEFR+GKTQL HTLCVT+QL     G +G+V ++DTEG FRPER+  IA+RFG+D  E LEN+   R F HEQQ++
Sbjct:   23 SIEKLQQAGINIADIKKLKEAGICTVGAVLMETKKH--------LANVKGISDAKVDKLIAAAQSLESE--SFTFISGATCLKNRSKVIRITSGSTELDKLLGGGVESMSITEVFGEFRTGKTQLCHTLCVTAQLPLSQSGGQGKVCFIDTEGTFRPERIPVIAQRFGVDGDEALENILYARAFTHEQQMQ 203
[Close]
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Match: A0A8H7SE14_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SE14_9FUNG)

HSP 1 Score: 179 bits (453), Expect = 6.740e-52
Identity = 100/192 (52.08%), Postives = 125/192 (65.10%), Query Frame = 1 
Query:    4 SVDELTKAGIKMAEINKLKEAHIATV-GAVLATPTKARCLARTLILLTIRGFSEATVGKVHAAAAKVDRSGSSGVFQTGLQCRVARQKVIKVHTGSKQLDALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPSETLENVFVTRVFNHEQQIE 576
            S+DEL   GI MA+INKLK A + TV GA +              LL I+G SE  V K+  AA+K    G    F TG +    RQKV+K+ TGSKQ DALLGGGI+T SITE FGE+R+GKTQL HT+CV  QLS E GGA  +V Y+DTEG FRP+R+ +IAERFG DP   L+N+ V R +N + Q++
Sbjct:   32 SIDELQAHGIGMADINKLKGAGVCTVRGAQMMIKKN---------LLKIKGLSETKVDKIKDAASKTQGCG----FMTGSELAHHRQKVVKISTGSKQFDALLGGGIQTMSITEVFGEYRTGKTQLAHTMCVQVQLSAEHGGASSKVAYIDTEGTFRPDRIRSIAERFGADPEVVLDNIIVARAWNSDHQMD 210
[Close]
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Match: B6K203_SCHJY (RecA family ATPase Dmc1 n=1 Tax=Schizosaccharomyces japonicus (strain yFS275 / FY16936) TaxID=402676 RepID=B6K203_SCHJY)

HSP 1 Score: 177 bits (449), Expect = 1.920e-51
Identity = 93/190 (48.95%), Postives = 131/190 (68.95%), Query Frame = 1 
Query:    7 VDELTKAGIKMAEINKLKEAHIATVGAVLATPTKARCLARTLILLTIRGFSEATVGKVHAAAAKVDRSGSSGVFQTGLQCRVARQKVIKVHTGSKQLDALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPSETLENVFVTRVFNHEQQIE 576
            ++ELT  GI M +I +LK+A I TV  V  +  +         LL I+GFSEA V K+  AA+K+  +     F T ++   +R++V  + TGSK  DA+LGGG+++ SITE FGEFR GKTQ+ HTLCVT+QL +E GGAEG+V ++DTEG FRP+R+ AIAERFG+D  + +EN+ V+R +N EQQ++
Sbjct:   22 IEELTAQGIGMTDIIRLKQAGICTVQGVQMSTKR--------FLLKIKGFSEAKVDKLKEAASKLCPAN----FATAMEISQSRKRVWSISTGSKAFDAMLGGGVQSMSITEVFGEFRCGKTQMSHTLCVTAQLPREMGGAEGKVAFIDTEGTFRPDRIRAIAERFGVDADQAMENIIVSRAYNSEQQMD 199
[Close]
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Match: A0A8H7V7F4_9FUNG (Uncharacterized protein n=1 Tax=Mucor saturninus TaxID=64648 RepID=A0A8H7V7F4_9FUNG)

HSP 1 Score: 176 bits (447), Expect = 6.040e-51
Identity = 99/190 (52.11%), Postives = 123/190 (64.74%), Query Frame = 1 
Query:    7 VDELTKAGIKMAEINKLKEAHIATVGAVLATPTKARCLARTLILLTIRGFSEATVGKVHAAAAKVDRSGSSGVFQTGLQCRVARQKVIKVHTGSKQLDALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYMDTEGNFRPERVEAIAERFGLDPSETLENVFVTRVFNHEQQIE 576
            VDEL   GI +A+I KLK A + TV  V     K         LL I+G SE  V K+  AA K     S   F T  Q  V R+KV+K+ TGSKQLDALLGGGI+T S+TE FGE+R+GKTQL HTLCV  QLS E GGA  +  Y+DTEG FRP+R+ +IA+RFG+DP   L+N+ V R +N +QQ+E
Sbjct:   39 VDELQMHGIGVADITKLKSAGVCTVRGVQMMTKKN--------LLKIKGLSETKVDKIKEAAIK-----SQARFVTAKQIAVQREKVVKISTGSKQLDALLGGGIQTMSLTEVFGEYRTGKTQLAHTLCVQVQLSPEDGGANSKAAYIDTEGTFRPDRIISIADRFGVDPEIVLDNIVVARAWNSDQQME 215
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10338.249.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FY86_ECTSI1.680e-10484.90Meiotic recombination protein DMC1/LIM15 homolog, ... [more]
A0A1J4KIK7_9EUKA4.790e-5856.02Meiotic recombination protein DMC1 like protein n=... [more]
A0A835YPZ9_9STRA1.120e-5553.93DMC1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A482S2G5_9ARCH2.270e-5555.42RECA_2 domain-containing protein n=1 Tax=archaeon ... [more]
W7TD93_9STRA3.240e-5552.17Dna repair protein DMC1 n=1 Tax=Nannochloropsis ga... [more]
A0A4D9CQI8_9STRA6.630e-5551.31Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A2FY08_TRIVA1.810e-5250.79Meiotic recombination protein DMC1/LIM15 homolog, ... [more]
A0A8H7SE14_9FUNG6.740e-5252.08Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
B6K203_SCHJY1.920e-5148.95RecA family ATPase Dmc1 n=1 Tax=Schizosaccharomyce... [more]
A0A8H7V7F4_9FUNG6.040e-5152.11Uncharacterized protein n=1 Tax=Mucor saturninus T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10338contigS-dermatodea_contig10338:2834..7878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score310.8
Seed ortholog evalue4.3e-82
Seed eggNOG ortholog2880.D7FY86
KEGG koko:K10872,ko:K14827
KEGG Pathwayko04113,map04113
EggNOG free text desc.strand invasion
EggNOG OGsCOG0468@1,KOG1434@2759
Ec32 ortholog descriptionMeiotic recombination protein DMC1/LIM15 homolog
Ec32 orthologEc-24_003430.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size577
Cds size576
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10338.249.1prot_S-dermatodea_contig10338.249.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10338 2835..7878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924152.4607801-CDS-S-dermatodea_contig10338:2834..29721622924152.4607801-CDS-S-dermatodea_contig10338:2834..2972Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10338 2835..2972 -
1694079053.536716-CDS-S-dermatodea_contig10338:2834..29721694079053.536716-CDS-S-dermatodea_contig10338:2834..2972Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10338 2835..2972 -
1622924152.4691384-CDS-S-dermatodea_contig10338:5038..52031622924152.4691384-CDS-S-dermatodea_contig10338:5038..5203Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10338 5039..5203 -
1694079053.5508788-CDS-S-dermatodea_contig10338:5038..52031694079053.5508788-CDS-S-dermatodea_contig10338:5038..5203Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10338 5039..5203 -
1622924152.4768171-CDS-S-dermatodea_contig10338:6241..63821622924152.4768171-CDS-S-dermatodea_contig10338:6241..6382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10338 6242..6382 -
1694079053.5600471-CDS-S-dermatodea_contig10338:6241..63821694079053.5600471-CDS-S-dermatodea_contig10338:6241..6382Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10338 6242..6382 -
1622924152.4849408-CDS-S-dermatodea_contig10338:7746..78781622924152.4849408-CDS-S-dermatodea_contig10338:7746..7878Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10338 7747..7878 -
1694079053.5684175-CDS-S-dermatodea_contig10338:7746..78781694079053.5684175-CDS-S-dermatodea_contig10338:7746..7878Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10338 7747..7878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10338.249.1

>prot_S-dermatodea_contig10338.249.1 ID=prot_S-dermatodea_contig10338.249.1|Name=mRNA_S-dermatodea_contig10338.249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=192bp
QSVDELTKAGIKMAEINKLKEAHIATVGAVLATPTKARCLARTLILLTIR
GFSEATVGKVHAAAAKVDRSGSSGVFQTGLQCRVARQKVIKVHTGSKQLD
ALLGGGIETSSITEFFGEFRSGKTQLMHTLCVTSQLSKESGGAEGRVVYM
DTEGNFRPERVEAIAERFGLDPSETLENVFVTRVFNHEQQIE
back to top

mRNA from alignment at S-dermatodea_contig10338:2834..7878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10338.249.1 ID=mRNA_S-dermatodea_contig10338.249.1|Name=mRNA_S-dermatodea_contig10338.249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5045bp|location=Sequence derived from alignment at S-dermatodea_contig10338:2834..7878- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCGTGGACGAGCTAACCAAGGCCGGCATCAAGATGGCCGAGATCAA
CAAGCTCAAGGAGGCTCACATCGCCACCGTCGGGGCCGTCCTTGCCACCC
CAACCAAGGCGCGTTGTCTCGCGCGTACACTGGTTTGCACATAATTTGTT
TTACCTGCAACTAGAAAGTCGCATGGCGGCGCTCGGCGCGTGAGGAATGG
CTGCGCGTCTCCGCGATAAAGAGGCAGGCCACATGTGGTTTGATGTTTCC
ATGACATCGATATGTCACTCACTTGCTGGCGCACAGATTATCATACATTT
GAAAACGCGAAATATTCACGTGTCTCGGGCACTACTGAATGCGCGTGTCT
CGGTCTGGTATGTGTGGCTTCCTCAGGTCAAAAGAGGTTTGTACTTCAGG
CATATCCACACGAAAACGAGCCATGCCACACGCACAAGATGTGCCCCGCG
CCGGGTCTCCTGATCCCCGCATAAAGTACATACGAAGTATATAATATATA
TAACTGGGAACACATTGAAGTTTTTTAGTATACATGAGGAGATCATTTCA
GACGATGGAAGCACCAGAAGAAGCACTGCGCAACGAACGAACGCGGTTGT
CGTTGCCAACGACCCACTGTTGTATTAAGTATAAACACATTCGTTATAGT
GATATCTTATCACACCTACAACCGACCGGCCCACCAATGGTTGCCAATAT
GGGATCCCGCTCGTGGCCAGACGAGAAATCGATAAATCGAGTATACCTAC
TGCGTGTAACAAAAACTTGAAACACGCGCGGCGCTTCTTCGCGCCCCCGG
GGGGCGACTGTGGAGCTATGGAGATATCCTACGGTAGGGCGAAGGGGGTA
CGTTTCAGGTCACTTCGTAGAACGAACTGGCTCGCTTCTGGAAGCGATTA
TAAGCCATAATTTTCTTGCCCGTATGGATGACAAAAAACCTACTACTTGT
AGAACTCTGGATAAATTTCCCCCTCCCTGAGGCTCCCCATTCTTGAGGAA
AACAGCAAAAATAACTTTGCTCTGGATCAAGACAGAAGAGATTTTTAGTT
AGAATTTTTTATTTCTGGGACGGAATACTCCTGATAAAAAAACCTTACAG
GTACTTGTCAATAACGTATGACACCCCCCCCCCCCCCCGTTTCTTTTCGA
GGAAAACAACAAACAACTACTGCTTGTACTTGTATATTATTCTCCGGATC
AAGAACAGATTTTTCTTTTGAATTTTTTATTTCTGGGAAGAAGGCGAAAA
TGCTCCGATTTTATCCGACATAAATAGTACGCCCGCTTTGTTTCCGGCAG
ATGAAATTGTTCATGATCGCCGCCTGATATTTAGCACAATGTAACATATT
GTAATATAATATATTATAATATGTCGTGGGTTTTGAAGCCGATGTTTAAT
AACGCATCTCTCTAGTTTGGAAAACCCTCGTAATCCGAACTATACCCCTC
CACTGCCCCCCGACCTCTCTTTGTCTTCTCTCTGCTGCCTCGTTAGATAC
TCCTGACAATCCGTGGCTTCAGCGAGGCCACCGTAGGCAAGGTCCACGCG
GCAGCAGCCAAAGTCGACAGGTCGGGATCGTCAGGCGTATTCCAGACGGG
GCTGCAGTGCCGCGTTGCTCGCCAGAAGGTCATCAAGGTAACACCGCTAC
ACAACGTCATGCACCACACGTATTACAGTAAGTGGTTGGTCGAACCGTTG
GCGAGGTGAGGACTACATACGTACATGATACCGGGCGCTTTCTTCACGCC
CGACTGACTTGTTATTTTTGAGTTATTGATTGATTGATTCATGGGTGGAT
GGGTTGATTGATCGGTTGATTGAATTTAACACTTACAACCGACCGGCCCA
CTACAGTTGCCGATCCCGCTATCTCGTGGTCGGATGATAAATCGAGGATC
GAAATAACCCCGCGGAACTACCTATATACAGCAGTACATACATATACATA
CATACTGAGAAGGAACTCCACATAGGATTTACACAAACTCTCGGAAACAG
ACGGGGGGAAACCTCGGAACTTAGGCCTGCTACAAAGAAAAGAAAAGGAG
AATAACAACTTTGGTTATACTTATAGCAGCAAGTATCAAGCCTGTTTCCC
ATTTTCCCCCCTTGCCTGTGTCTGATGCGATTGCCACGGATCCGCTCCCT
TGCTAGAAACCCCTCTCCAGCGCCTGAACCTCCTTACCCTCGCGGGAGCA
ATCGAAATATAGGACCGTAGGAGGGGTTGCCGGCCGGCCAGCCATACTAA
AATAGTATAATAATAGTAATAGTGTTGCAATCGAAAGATAGGACCATAGG
AGGGGTTATCGGCTGGCCAGCCACACGATAATACTATAATAATAGTAATA
GTAATAGTGTTGCAATCGAAAGATAGGACCATAGGAGGGGTTTTCGGCCG
ACCAGCCACACTATAATACTATATTCATAGCAATATTGTTGCAATCCGGA
ACATCTTTGTTGAACCTGGCAAACTCGGAACGGGATATGAGATGGGCTGG
CCAATCAGGCGTCAACACAGTAGTCAAAATGGGAAAACGCCTTCTATCTC
CTCCTGCGCGACAGACAAGAAAAAAAAGTGATTAGTCTTACCTCCCTCCT
TGTATGTTGATTACTCTCGAGTCAAGATAAATTATCGGTTTCCCTCGCCT
CTTGGTGGCGCCCTTGGAGGAGCAGGTGCACACGGGGTCGAAGCAACTTG
ATGCCCTACTCGGTGGGGGCATCGAGACGAGCTCCATCACTGAGTTCTTC
GGCGAGTTCAGGTCCGGGAAGACCCAGCTCATGCATACCCTCTGTGTGAC
GTCGCAGCTCAGCAAGGAGTCCGGCGGGGCAGAAGGAAGGGTCAGTTTCT
CAATACACGCTAGCTCACATGCATGCATGCAATGCGTCTACTACGTGAGC
TTCACGCCACCCCTCTCTGTTCTTCCTAAAAGATAGGGTGGTCTCGGACA
CAGCCAATTGTACAGAACGATGCTATGTAGAATCATGCCTCTTTCTTCCT
GGAGGACAGCGTCTCGAACAAAGTCGACCACCGGTCGGTTGAACGTGTGA
TAACCAATCAATCACCCAATCAATACAGAACGGTGAGAGAACGCCTCGGG
GCGATCACAATGTTGGGCATCAAACCGACCGCGCGTAACTCCTCCCATTG
CCCAGCCCCTCCTTACACTGAGACCTACAACCGCCCTGCCTTTCAGGTTC
GAGGTGGGATTCGTCGAGGTAGGGTTTGCTCTTGTGGCATCAAGCTGTAC
AACTGCTATATGTAGGGCACGGGGGAGTTCATTCCGTGTCTTGTGAGCTC
ACGATACCTCGGCCGAAGAGTCTCATATCTCCTGAAAGGGGTGAAACGCA
TCACATCTTATAGGATACCTGGTGGTGCTGAACTATTGACAGTTCGAACG
ACTTAGAGCAACCATTGGCTTATGATTGGTAATCCACCAGGAGTGCTCGT
GACCAGATAATCGTCTACGTGTACCACACTTATATTCAACCGTCGTGTAT
GCTGTGTGCGTGCGGGGCTTTTACGGTCGGACGGAGATCAAGTCCCTTTG
CGGTACTGCGTGGAGTATAGTCACGCCTACTGAATGCTCAACATTCGGTT
GCCTGAATGCTCAACATTCGGTTGCCCGGTACGTCGAATCAACCCATGGC
ATATCGGTTTGGCGTCGCAAACGCAAGGGTGATGGCTACGGCTGGTATCA
TCCTTGTGAAAGGCGGCCTAGCCAGTGAATACGTGGCAAATCGCTCCATC
TCGGCGTTGTTGGCACGCGTGGTCTATGTCCGTCTGGATACGAGATGTGT
TTAACGTAAGAAGCCCCCCCCTCGCTAGATAGAACATTGAAATCCTTGTT
CGAGCCACGTTTGCCGAAGAAGGAGAACATTATTGGCCATCGTCGATTGA
TCGATCCAGTGTGACCAACGCTCCGTCCTCCTGCGGACGCGTGCTTAATG
GTCTAACGGCAACTGTTGGGCATGTAAAACTCGGGCACCCCCCCTCGCAC
ACACACAGTAAGACTTATCGTCCAACGGCTCTGATGCCGCAAAGGTTTGG
CCGAAGTAAAAAATGGCACTTCTTTTTGAAGGCTCGCCCAGAGGGTCCAT
GCCCAGAGGCTCCATACCCCCGAAGAGTGGCGAATTGTCCTCCACACGAC
AACTAACTCCCCTTTCGATCCCCACGGAATCAATGAGTTCTGTTATGCAT
CAGGATGATGTCTGGCATGCTTCGTTGGTTGGAGTGCAGTGAAGGCCGTT
AGGATAGCCAAACTCCGTGTCAGCTACAACGCAAATATGCATGCCTCTCC
ATTGCGTCAAGCAATGGAGGCGAATGGCGCTATTCACCCCCCCCGCCCCC
TCTCCCCACCCGGCCAATATGAAAGCAACTCTCCTTGGCAAAGTAGAAAG
GGAACGATCGACCATCGGCGATCCTTTTGTCTAGTGGGATCACTGCCCCG
TCCTTCCGAGGAGTCTGACGTGTGTTCAATGGCCTGACCGTCAATGCATG
CAAACATTGAGTGTACCTCGCCCCCCATGGCTGAGCTGGGGAAAACTGAA
AAAGGCTGTGACGGAGAGATTTTTGAAGCATGGGACAGCCAGACGGAAGG
AGGTAGCTATATACTGGGGGATAAGAAGTGGCCTGAGAAGGCGAGAAGTG
ATGTAGGCAGAGTAGGAGCAAGGTTTTTGCGCCACCTTTGGCAAAGTAGG
AAGGAACGATTGGCCATCGGCGATAGATCGGTCCTGTGGGACCAATGCTC
CCTCCGTCCTCTCGAGGGTGCGTGGTCAATGGCCTAACCGCTAAGGCATG
CAAAAATTGAATGCACCCCCCCCCCCCCTCCCCCCGCGCCCCCCCCCACC
TTTTAGGCTTGACGCAACAACTACTAAAAATATTTTTTCCCGGCCACACG
CATCAGGTTGTGTACATGGACACCGAAGGGAACTTCCGGCCGGAACGAGT
CGAGGCTATCGCGGAGAGGTTTGGTCTGGACCCCAGCGAGACCCTGGAGA
ACGTGTTCGTCACCCGCGTCTTCAACCATGAGCAGCAGATTGAGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig10338:2834..7878-

>mRNA_S-dermatodea_contig10338.249.1 ID=mRNA_S-dermatodea_contig10338.249.1|Name=mRNA_S-dermatodea_contig10338.249.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1152bp|location=Sequence derived from alignment at S-dermatodea_contig10338:2834..7878- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGTCCGTGGACGAGCTAACCAAGGCCGGCATCAAGATGGCCGAGATCAA
CAAGCTCAAGGAGGCTCACATCGCCACCGTCGGGGCCGTCCTTGCCACCC
CAACCAAGGCGCGTTGTCTCGCGCGTACACTGCAGTCCGTGGACGAGCTA
ACCAAGGCCGGCATCAAGATGGCCGAGATCAACAAGCTCAAGGAGGCTCA
CATCGCCACCGTCGGGGCCGTCCTTGCCACCCCAACCAAGGCGCGTTGTC
TCGCGCGTACACTGATACTCCTGACAATCCGTGGCTTCAGCGAGGCCACC
GTAGGCAAGGTCCACGCGGCAGCAGCCAAAGTCGACAGGTCGGGATCGTC
AGGCGTATTCCAGACGGGGCTGCAGTGCCGCGTTGCTCGCCAGAAGGTCA
TCAAGATACTCCTGACAATCCGTGGCTTCAGCGAGGCCACCGTAGGCAAG
GTCCACGCGGCAGCAGCCAAAGTCGACAGGTCGGGATCGTCAGGCGTATT
CCAGACGGGGCTGCAGTGCCGCGTTGCTCGCCAGAAGGTCATCAAGGTGC
ACACGGGGTCGAAGCAACTTGATGCCCTACTCGGTGGGGGCATCGAGACG
AGCTCCATCACTGAGTTCTTCGGCGAGTTCAGGTCCGGGAAGACCCAGCT
CATGCATACCCTCTGTGTGACGTCGCAGCTCAGCAAGGAGTCCGGCGGGG
CAGAAGGAAGGGTGCACACGGGGTCGAAGCAACTTGATGCCCTACTCGGT
GGGGGCATCGAGACGAGCTCCATCACTGAGTTCTTCGGCGAGTTCAGGTC
CGGGAAGACCCAGCTCATGCATACCCTCTGTGTGACGTCGCAGCTCAGCA
AGGAGTCCGGCGGGGCAGAAGGAAGGGTTGTGTACATGGACACCGAAGGG
AACTTCCGGCCGGAACGAGTCGAGGCTATCGCGGAGAGGTTTGGTCTGGA
CCCCAGCGAGACCCTGGAGAACGTGTTCGTCACCCGCGTCTTCAACCATG
AGCAGCAGATTGAGGTTGTGTACATGGACACCGAAGGGAACTTCCGGCCG
GAACGAGTCGAGGCTATCGCGGAGAGGTTTGGTCTGGACCCCAGCGAGAC
CCTGGAGAACGTGTTCGTCACCCGCGTCTTCAACCATGAGCAGCAGATTG
AG
back to top