mRNA_S-dermatodea_contig13611.2091.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13611.2091.1
Unique NamemRNA_S-dermatodea_contig13611.2091.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13611.2091.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13611contigS-dermatodea_contig13611:102..1357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1256
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13611.2091.1prot_S-dermatodea_contig13611.2091.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13611 546..1259 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924291.3589008-UTR-S-dermatodea_contig13611:101..5451622924291.3589008-UTR-S-dermatodea_contig13611:101..545Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13611 102..545 +
1694079155.4052145-UTR-S-dermatodea_contig13611:101..5451694079155.4052145-UTR-S-dermatodea_contig13611:101..545Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13611 102..545 +
1622924291.384162-UTR-S-dermatodea_contig13611:1259..13571622924291.384162-UTR-S-dermatodea_contig13611:1259..1357Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13611 1260..1357 +
1694079155.4347847-UTR-S-dermatodea_contig13611:1259..13571694079155.4347847-UTR-S-dermatodea_contig13611:1259..1357Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13611 1260..1357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924291.3761752-CDS-S-dermatodea_contig13611:545..12591622924291.3761752-CDS-S-dermatodea_contig13611:545..1259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13611 546..1259 +
1694079155.424232-CDS-S-dermatodea_contig13611:545..12591694079155.424232-CDS-S-dermatodea_contig13611:545..1259Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13611 546..1259 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13611.2091.1

>prot_S-dermatodea_contig13611.2091.1 ID=prot_S-dermatodea_contig13611.2091.1|Name=mRNA_S-dermatodea_contig13611.2091.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=238bp
MRIPTLDKVKTRVPETRVPGSNTMKQMTASHLSLDTGRSYPTTSNARGVA
MYFRNRDTRRGLGGPADGMQSLRRPAIEETHWLQSTVRRPQSHRDTYRVN
IPTPRPSYNPCSRSYAQDASLRISTVRLLLARCSTPDVDILICNNPPRPP
SPSPIVIIHYKPSTPRLGSRVTQLNSFHAPGAPIPLPLACRAFCVFQPYS
FHSTCSPKHGTRQASPPGAAFFATKPLHVATMTHQAP*
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mRNA from alignment at S-dermatodea_contig13611:102..1357+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13611.2091.1 ID=mRNA_S-dermatodea_contig13611.2091.1|Name=mRNA_S-dermatodea_contig13611.2091.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1256bp|location=Sequence derived from alignment at S-dermatodea_contig13611:102..1357+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCCTGGCTTTCGTCGTACGCGAATGCAACAACGAAACCCCCGTTCTCG
GACTTTTCGAGCACAAAACAACAACACACAGCAAGCAGCTAGTCTGCCTG
CTGTCGATTCCGCACAGACATATCGTACAATACAAGTGTCACACGCACGT
CGGAACTCTACATACTTTTGCATGGCCACTCACCCGAAATAAGGATAGTG
GGAATTGGAATGAGAGCAAGCTTTGGCAAACGAAAGCAAAGACCACTTCC
TTACTTAACCACACAGCTAAAAATTAACAGGGGTGCATGCAACCGACGCG
CAAAGGGCAATATCGACGGCACACACCCTAAACTGCGGGTCAGCAGGTTC
CTCAATACATGAAAACAAGTGTACACGCACACACACAAAACCACTCAACA
CACGCACCCACGAAGCATGATCCTCTCCAAAACCCTACGTTTATATGCGT
ATCCCCACCTTAGACAAAGTGAAGACTCGGGTACCAGAAACTCGGGTACC
AGGAAGCAACACAATGAAACAGATGACCGCATCTCATTTGTCACTTGACA
CAGGACGAAGCTACCCAACAACCTCAAACGCGCGAGGGGTTGCCATGTAC
TTCCGAAATAGAGACACGCGACGAGGCTTAGGTGGTCCCGCCGATGGCAT
GCAATCATTGCGACGGCCTGCGATAGAAGAAACACACTGGCTGCAGAGCA
CGGTGCGGCGGCCCCAGAGTCACCGAGATACATATAGGGTAAATATACCA
ACACCACGCCCATCGTACAACCCGTGCTCGCGCTCCTACGCCCAGGACGC
TTCCCTTCGCATTTCTACTGTACGGCTCTTACTCGCAAGATGCAGCACCC
CCGATGTCGACATACTTATCTGCAACAATCCCCCCCGCCCCCCATCCCCC
TCCCCGATTGTGATAATACATTATAAACCCTCCACCCCGCGTTTGGGGTC
GCGCGTGACGCAATTGAACTCATTTCACGCTCCAGGTGCACCCATCCCGC
TTCCGCTTGCGTGTCGCGCATTTTGTGTTTTCCAACCATACTCCTTCCAT
TCCACCTGTTCCCCAAAACATGGTACTCGTCAGGCGTCTCCTCCTGGCGC
TGCGTTTTTCGCCACGAAACCTCTTCACGTCGCTACAATGACCCACCAGG
CTCCCTGAACGCAGCAAGAGCTCAGCATGAAGAAGTCCTGTGTTCCCCCG
CCCCATTCACCTTCAGTGGGACGTCGATATTGAACATAACGGGTGAGCAG
AAAGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13611:102..1357+

>mRNA_S-dermatodea_contig13611.2091.1 ID=mRNA_S-dermatodea_contig13611.2091.1|Name=mRNA_S-dermatodea_contig13611.2091.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at S-dermatodea_contig13611:102..1357+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGTATCCCCACCTTAGACAAAGTGAAGACTCGGGTACCAGAAACTCG
GGTACCAGGAAGCAACACAATGAAACAGATGACCGCATCTCATTTGTCAC
TTGACACAGGACGAAGCTACCCAACAACCTCAAACGCGCGAGGGGTTGCC
ATGTACTTCCGAAATAGAGACACGCGACGAGGCTTAGGTGGTCCCGCCGA
TGGCATGCAATCATTGCGACGGCCTGCGATAGAAGAAACACACTGGCTGC
AGAGCACGGTGCGGCGGCCCCAGAGTCACCGAGATACATATAGGGTAAAT
ATACCAACACCACGCCCATCGTACAACCCGTGCTCGCGCTCCTACGCCCA
GGACGCTTCCCTTCGCATTTCTACTGTACGGCTCTTACTCGCAAGATGCA
GCACCCCCGATGTCGACATACTTATCTGCAACAATCCCCCCCGCCCCCCA
TCCCCCTCCCCGATTGTGATAATACATTATAAACCCTCCACCCCGCGTTT
GGGGTCGCGCGTGACGCAATTGAACTCATTTCACGCTCCAGGTGCACCCA
TCCCGCTTCCGCTTGCGTGTCGCGCATTTTGTGTTTTCCAACCATACTCC
TTCCATTCCACCTGTTCCCCAAAACATGGTACTCGTCAGGCGTCTCCTCC
TGGCGCTGCGTTTTTCGCCACGAAACCTCTTCACGTCGCTACAATGACCC
ACCAGGCTCCCTGAATGCGTATCCCCACCTTAGACAAAGTGAAGACTCGG
GTACCAGAAACTCGGGTACCAGGAAGCAACACAATGAAACAGATGACCGC
ATCTCATTTGTCACTTGACACAGGACGAAGCTACCCAACAACCTCAAACG
CGCGAGGGGTTGCCATGTACTTCCGAAATAGAGACACGCGACGAGGCTTA
GGTGGTCCCGCCGATGGCATGCAATCATTGCGACGGCCTGCGATAGAAGA
AACACACTGGCTGCAGAGCACGGTGCGGCGGCCCCAGAGTCACCGAGATA
CATATAGGGTAAATATACCAACACCACGCCCATCGTACAACCCGTGCTCG
CGCTCCTACGCCCAGGACGCTTCCCTTCGCATTTCTACTGTACGGCTCTT
ACTCGCAAGATGCAGCACCCCCGATGTCGACATACTTATCTGCAACAATC
CCCCCCGCCCCCCATCCCCCTCCCCGATTGTGATAATACATTATAAACCC
TCCACCCCGCGTTTGGGGTCGCGCGTGACGCAATTGAACTCATTTCACGC
TCCAGGTGCACCCATCCCGCTTCCGCTTGCGTGTCGCGCATTTTGTGTTT
TCCAACCATACTCCTTCCATTCCACCTGTTCCCCAAAACATGGTACTCGT
CAGGCGTCTCCTCCTGGCGCTGCGTTTTTCGCCACGAAACCTCTTCACGT
CGCTACAATGACCCACCAGGCTCCCTGA
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