mRNA_S-dermatodea_contig13501.2044.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13501.2044.1
Unique NamemRNA_S-dermatodea_contig13501.2044.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13501.2044.1 vs. uniprot
Match: D8LRA5_ECTSI (SEC7 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA5_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 7.370e-35
Identity = 73/89 (82.02%), Postives = 79/89 (88.76%), Query Frame = 2 
Query:   11 RKIPRVSAASLAVAEVLIAEVALRNRERMNLVLPLLLEHYRRRLGGATFVTFSVEKAATGLLRLVSRLFSRPGLAAPLSRALSLIIPPH 277
            R  PRVS ASLA AEVLIAE+ALRNRER+ LVLP+LLEHYRRRL GAT+ TFSVEKAATGLLR+VSRLF RPGLAAPLSRAL  +IPPH
Sbjct: 1268 RTTPRVSTASLAYAEVLIAEIALRNRERIVLVLPVLLEHYRRRLAGATYATFSVEKAATGLLRIVSRLFFRPGLAAPLSRALPWLIPPH 1356
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BLAST of mRNA_S-dermatodea_contig13501.2044.1 vs. uniprot
Match: A0A7S2G6X0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G6X0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.770e-13
Identity = 36/58 (62.07%), Postives = 45/58 (77.59%), Query Frame = 2 
Query:  110 PLLLEHYRRRLGGATFVTFSVEKAATGLLRLVSRLFSRPGLAAPLSRALSLIIPPHAR 283
            PLL  HY+ RL  A  +TFSVEKAATGLLRL +R+ SR G+A PL+ ALS ++PPHA+
Sbjct:    5 PLLAGHYKLRLQHARAMTFSVEKAATGLLRLAARVLSREGMAQPLAEALSWLLPPHAQ 62
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BLAST of mRNA_S-dermatodea_contig13501.2044.1 vs. uniprot
Match: A0A7S1BYF5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BYF5_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 2.680e-5
Identity = 40/102 (39.22%), Postives = 53/102 (51.96%), Query Frame = 2 
Query:    2 SEDRKIPRVSAASLAVAEVLIAEVALRNRERMNLVLPLLLEHYRRRLGG-----------ATF-VTFSVEKAATGLLRLVSRLFSRPGLAAPLSRALSLIIP 271
            S+D     VS AS A AEVL+ E+ L+NR+R++ +  LL  HY  RL             ATF  T  +EK ATGLLR+   +  R  L   +  AL L+ P
Sbjct:   92 SDDDGTMLVSPASEAFAEVLLCEIVLKNRDRIDSIWDLLEHHYTHRLSAKNSDEETPDLAATFSCTPGIEKCATGLLRICYHVLHREDLMNRVFGALRLLHP 193
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13501.2044.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LRA5_ECTSI7.370e-3582.02SEC7 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A7S2G6X0_9STRA2.770e-1362.07Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S1BYF5_9STRA2.680e-539.22Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13501contigS-dermatodea_contig13501:5627..6618 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size302
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924287.998663-CDS-S-dermatodea_contig13501:5628..57961622924287.998663-CDS-S-dermatodea_contig13501:5628..5796Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13501 5629..5796 -
1694079152.88263-CDS-S-dermatodea_contig13501:5628..57961694079152.88263-CDS-S-dermatodea_contig13501:5628..5796Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13501 5629..5796 -
1622924288.0092144-CDS-S-dermatodea_contig13501:6486..66181622924288.0092144-CDS-S-dermatodea_contig13501:6486..6618Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13501 6487..6618 -
1694079152.8933485-CDS-S-dermatodea_contig13501:6486..66181694079152.8933485-CDS-S-dermatodea_contig13501:6486..6618Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13501 6487..6618 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13501.2044.1prot_S-dermatodea_contig13501.2044.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13501 5629..6618 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13501.2044.1

>prot_S-dermatodea_contig13501.2044.1 ID=prot_S-dermatodea_contig13501.2044.1|Name=mRNA_S-dermatodea_contig13501.2044.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
VGGSENSSRLGRLPRGRGGSHSRGCPPESREDEPRAASAAGALQAAARRS
NLRHVLGRKGRHGTLAARLPPFLSSGACRPSIASALVDNPAARAPSGVCI
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mRNA from alignment at S-dermatodea_contig13501:5627..6618-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13501.2044.1 ID=mRNA_S-dermatodea_contig13501.2044.1|Name=mRNA_S-dermatodea_contig13501.2044.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=992bp|location=Sequence derived from alignment at S-dermatodea_contig13501:5627..6618- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGGAGGATCGGAAAATTCCTCGCGTCTCGGCCGCCTCCCTCGCGGTCG
CGGAGGTTCTCATAGCCGAGGTTGCCCTCCGGAATCGCGAGAGGATGAAC
CTCGTGCTGCCTCTGCTGCTGGAGCATTACAGGTGAGCTGGGTTTCTTTG
GCTCCTGCATCTTGCTTCAGAACGGCCCGACACAGTGTTTGTGGCCGGCG
GTGTTCAGGTGTCGTCGGAAAAAGCCAGCCCAATCGCTCCAGAGACTCGG
CGATTTCCTAGTACAGTGGGAGAGCTTCTTGGGCTTGCTTCGGCGCGCTC
TTTCTTTGCTGTTCGGCCTGTCAGAGCAAACAGACGCCGAGCTCTAAGCC
GCCGTAGCCCCCAAATCCCTGCTGGGTGCCCATATATTTTTCTCAGTTTG
CACAGGCATGCAAGTGCAGAGGCGTACAATCAGTTGGCGTGGGATTTTGG
CGACCTTTCTCTCCGACTGTAACACGAAGGTCGAGAGGCCCGGGCAAACG
GCGGCAGGGTTGTACATCGCCAGGTCTTCTCTATTATCCGAGAAATGGCA
AGCCGGGCTCATGTGCTGACGGTATTTCTTCCCTTTCGAGCGCTTTGATG
CGATGCTCCCCGCTGCTGTATCATGGCTACATAGTAGTATGTGTGGCGTT
GCCCCGAGCATTATTGGGACACACATTCCGTGAATTGGCGTGCACACACT
GCACAATACGGTAGAGGTAACGTGTTCATCTTTCAACTCCGGTTGTTGCC
AGACGTCGTTGCCCTGCCTCTCAATACATGGACCTTGCCCTCACGATACT
TCCCCGGTCTCTGTAACTGTAGGCGGCGGCTCGGAGGAGCAACCTTCGTC
ACGTTCTCGGTAGAAAAGGCCGCCACGGGACTCTTGCGGCTCGTCTCCCG
CCTTTTCTCTCGTCCGGGGCTTGCCGCCCCTCTATCGCGAGCGCTCTCGT
TGATAATCCCGCCGCACGCGCGCCCAGTGGTGTTTGCATCGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13501:5627..6618-

>mRNA_S-dermatodea_contig13501.2044.1 ID=mRNA_S-dermatodea_contig13501.2044.1|Name=mRNA_S-dermatodea_contig13501.2044.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig13501:5627..6618- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCGGAGGATCGGAAAATTCCTCGCGTCTCGGCCGCCTCCCTCGCGGTCG
CGGAGGTTCTCATAGCCGAGGTTGCCCTCCGGAATCGCGAGAGGATGAAC
CTCGTGCTGCCTCTGCTGCTGGAGCATTACAGGTCGGAGGATCGGAAAAT
TCCTCGCGTCTCGGCCGCCTCCCTCGCGGTCGCGGAGGTTCTCATAGCCG
AGGTTGCCCTCCGGAATCGCGAGAGGATGAACCTCGTGCTGCCTCTGCTG
CTGGAGCATTACAGGCGGCGGCTCGGAGGAGCAACCTTCGTCACGTTCTC
GGTAGAAAAGGCCGCCACGGGACTCTTGCGGCTCGTCTCCCGCCTTTTCT
CTCGTCCGGGGCTTGCCGCCCCTCTATCGCGAGCGCTCTCGTTGATAATC
CCGCCGCACGCGCGCCCAGTGGTGTTTGCATCGCGGCGGCTCGGAGGAGC
AACCTTCGTCACGTTCTCGGTAGAAAAGGCCGCCACGGGACTCTTGCGGC
TCGTCTCCCGCCTTTTCTCTCGTCCGGGGCTTGCCGCCCCTCTATCGCGA
GCGCTCTCGTTGATAATCCCGCCGCACGCGCGCCCAGTGGTGTTTGCATC
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