mRNA_S-dermatodea_contig135.2041.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: D7FX84_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX84_ECTSI) HSP 1 Score: 148 bits (373), Expect = 3.920e-39 Identity = 70/85 (82.35%), Postives = 78/85 (91.76%), Query Frame = 1
Query: 1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVGEQ 255
GR EVVATSYDLLR C +LKK RF+ VIFDEYHTIKS++ MVSQAACEL+TKRVFGLTGTLIQNDMKELWFL+HLIDP++VGEQ
Sbjct: 578 GRYEVVATSYDLLRACVDRLKKQRFDAVIFDEYHTIKSATTMVSQAACELRTKRVFGLTGTLIQNDMKELWFLLHLIDPLAVGEQ 662
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A7S0WH70_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0WH70_9CRYP) HSP 1 Score: 79.7 bits (195), Expect = 4.460e-17 Identity = 42/93 (45.16%), Postives = 57/93 (61.29%), Query Frame = 1
Query: 1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVGEQVWADGGGE 279
G +EV+ SY+ R AG L + +E V+FDE H IK++ A +++AA L T R GLTGTL+QNDMKEL M +P S+G + G E
Sbjct: 15 GEVEVLIASYETYRSLAGTLNQIEWEAVVFDEAHRIKNNKAALTEAAMRLTTMRRIGLTGTLLQNDMKELHCTMSWANPDSLGAWKFFKAGWE 107
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A0S7G528_9TELE (RAD26 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7G528_9TELE) HSP 1 Score: 79.7 bits (195), Expect = 3.540e-15 Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
GR+E+ T+Y+ LRIC Q K + V+ DE H IK+ + ++Q+ ELK K GLTGT++QN+++ELW +M +P +G
Sbjct: 229 GRIEIALTTYETLRICLDQFNKINWSAVVVDEAHKIKNPESQITQSMKELKCKNRIGLTGTILQNNLEELWCVMDWANPGCLG 311
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A0S7G6Q7_9TELE (RAD26 (Fragment) n=5 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7G6Q7_9TELE) HSP 1 Score: 79.7 bits (195), Expect = 3.950e-15 Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
GR+E+ T+Y+ LRIC Q K + V+ DE H IK+ + ++Q+ ELK K GLTGT++QN+++ELW +M +P +G
Sbjct: 229 GRIEIALTTYETLRICLDQFNKINWSAVVVDEAHKIKNPESQITQSMKELKCKNRIGLTGTILQNNLEELWCVMDWANPGCLG 311
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A3Q2GI15_CYPVA (ERCC excision repair 6 like 2 n=7 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2GI15_CYPVA) HSP 1 Score: 78.6 bits (192), Expect = 1.040e-14 Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
GR+E+ T+Y+ LR+C Q K + GVI DE H IK+ ++ ++QA +L+ K GLTGT++QN+++ELW +M P +G
Sbjct: 185 GRIEIALTTYETLRLCLDQFNKIDWFGVIVDEVHKIKNPNSQITQAMKQLRCKNRIGLTGTILQNNLEELWCVMDWAKPGCLG 267
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: UPI0003F0A71C (putative DNA repair and recombination protein RAD26-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0A71C) HSP 1 Score: 77.4 bits (189), Expect = 1.930e-14 Identity = 42/109 (38.53%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVGEQVWADGGGEKTHILILRGTVVNRSK 327
G+L+V+ T+++ LR+ L + + V DE H IK A V+QA L+TKR +GLTGT++QN+M ELW ++ +P +G V D + T I+RG + SK
Sbjct: 91 GKLDVILTTHETLRVSVDDLNRVNWSAVFVDEVHKIKEPMAKVTQAFKTLRTKRRYGLTGTILQNNMLELWCVLDWANPGCLGAYVDFDAEFQNT---IVRGQRFDASK 196
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: G3JXY8_9CICH (Putative repair and recombination helicase RAD26L (Fragment) n=3 Tax=Cichlidae TaxID=8113 RepID=G3JXY8_9CICH) HSP 1 Score: 77.4 bits (189), Expect = 2.480e-14 Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
GR+E+ T+Y+ LR+C Q K + GV+ DE H IK+ + ++QA EL+ K GLTGT++QN+++ELW +M P +G
Sbjct: 98 GRVEIALTTYETLRLCLDQFNKIDWSGVVVDEAHKIKNPDSQITQAMKELRCKVRIGLTGTILQNNLEELWCVMDWAIPGCLG 180
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A3P8PZ00_ASTCA (Excision repair cross-complementation group 6-like 2 n=2 Tax=Haplochromini TaxID=319058 RepID=A0A3P8PZ00_ASTCA) HSP 1 Score: 77.4 bits (189), Expect = 2.610e-14 Identity = 35/83 (42.17%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
GR+E+ T+Y+ LR+C Q K + GV+ DE H IK+ + ++QA EL+ K GLTGT++QN+++ELW +M P +G
Sbjct: 208 GRVEIALTTYETLRLCLDQFNKIDWSGVVVDEAHKIKNPDSQITQAMKELRCKVRIGLTGTILQNNLEELWCVMDWAIPGCLG 290
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A3B3TJZ5_9TELE (ERCC excision repair 6 like 2 n=3 Tax=Poecilia TaxID=8080 RepID=A0A3B3TJZ5_9TELE) HSP 1 Score: 77.4 bits (189), Expect = 2.610e-14 Identity = 33/83 (39.76%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
GR+E+ T+Y+ LR+C Q K + V+ DE H IK+ + ++Q+ EL+ K GLTGT++QN+++ELW +M +P +G
Sbjct: 205 GRVEIALTTYETLRLCLDQFNKINWSAVVVDEAHKIKNPESQITQSMKELRCKNRIGLTGTILQNNLEELWCVMDWANPGCLG 287
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Match: A0A3B4ZVU9_9TELE (ERCC excision repair 6 like 2 n=1 Tax=Stegastes partitus TaxID=144197 RepID=A0A3B4ZVU9_9TELE) HSP 1 Score: 77.4 bits (189), Expect = 2.620e-14 Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = 1
Query: 1 GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELKTKRVFGLTGTLIQNDMKELWFLMHLIDPVSVG 249
GR+E+ T+Y+ LR+C Q K + GV+ DE H IK+ ++ ++QA +L+ K GLTGT++QN+++ELW +M P +G
Sbjct: 235 GRVEIALTTYETLRLCLDQFNKIHWSGVVVDEAHKIKNPNSQITQAMKQLRCKIRIGLTGTILQNNLEELWCVMDWAVPGCLG 317 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig135.2041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig135.2041.1 >prot_S-dermatodea_contig135.2041.1 ID=prot_S-dermatodea_contig135.2041.1|Name=mRNA_S-dermatodea_contig135.2041.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp GRLEVVATSYDLLRICAGQLKKARFEGVIFDEYHTIKSSSAMVSQAACELback to top mRNA from alignment at S-dermatodea_contig135:294..620- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig135.2041.1 ID=mRNA_S-dermatodea_contig135.2041.1|Name=mRNA_S-dermatodea_contig135.2041.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at S-dermatodea_contig135:294..620- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig135:294..620- >mRNA_S-dermatodea_contig135.2041.1 ID=mRNA_S-dermatodea_contig135.2041.1|Name=mRNA_S-dermatodea_contig135.2041.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at S-dermatodea_contig135:294..620- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |