mRNA_S-dermatodea_contig1346.2029.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig1346.2029.1 vs. uniprot
Match: D7FHY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY2_ECTSI) HSP 1 Score: 332 bits (851), Expect = 1.190e-102 Identity = 210/398 (52.76%), Postives = 260/398 (65.33%), Query Frame = 3
Query: 132 LLVLGALFTAARS--CDDIDNYFGMLGSVTEIDLGAVTTVDCPANDEGGDLDEILVASGTSLTIKSTQSYVRFVNVKFTVEEGATLVFDMPATWFGPNSGDEEGGTGFMLDVYDDASVTFKGEFSASEIRNIRSVFHNTAKGTIDFKGDALFNDNGNVFRSNYGTLKFRGHTVFKNNIWLALDLMGPSSYVRFSKTATFDDNGGSFDGATGCGVANREGTVIFRDDALFMNHKCDEGPAVFNGGKMKFYGKARFNDNQNQNDWGGGVAN-----SD--GTLLFKSAVQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFSVSQGGQYGTSEESGFLEFKKPQVVRYENNVILKNEFNDQLVTGCTLAYVEDG-TTLEGFDVEDVCVEDTV 1295
LL L + + RS CDDID YFG + SVTEIDLG + VDCP+ND+ +L I + SG +LT+KS +S+VRFVN++F VEEGA+L+FDMP T GPNSG EG F+ DV + S+TF G+F AS++ N+RSVF+N +G+I+FK D+LFN+NGNVFRSN G S+VRFSKTATF DN G FDGA GC + N GT IFRDDA+F +H CDEG AV N GKM+FYGKA F+DN+N D GGGV N SD G L+FK+AVQF XXXXXXXXXXXXXXXXXXXXX V+ G + F+KP+VVR +N +L NE+N +TGC+LAYVE TT+ GFD +D+C E TV
Sbjct: 11 LLALALMASTVRSQECDDIDAYFGDVSSVTEIDLGTIIRVDCPSNDDAEELPYITIESGKTLTVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSGQSEGAGDFVFDVAEGGSLTFNGKFRASQVSNVRSVFYN--RGSIEFKDDSLFNNNGNVFRSNXXXXXXXXXXXXXXXXXXXXXNDGEDSFVRFSKTATFIDNAGFFDGAWGCAIDNG-GTAIFRDDAVFSDHDCDEGAAVSNTGKMRFYGKAYFSDNRNYRDTGGGVLNRAVYDSDQAGDLVFKAAVQFNRNTAEYGGGIAVTGXXXXXXXXXXXXXXXXXXXXXXXXVTGDGS---------VTFEKPEVVRISDNTLLANEYNPDPITGCSLAYVEGNETTVVGFDFDDICQEVTV 396
BLAST of mRNA_S-dermatodea_contig1346.2029.1 vs. uniprot
Match: A0A6H5L091_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L091_9PHAE) HSP 1 Score: 217 bits (552), Expect = 2.760e-59 Identity = 150/406 (36.95%), Postives = 217/406 (53.45%), Query Frame = 3
Query: 132 LLVLGALFTAARSCDDIDNYFGMLGSVT---EIDLGAVTTVDCPA--NDEGGD-LDEILVASGTSLTIKSTQSYVRFVNVKFTVEEGATLVFDMPATWFGPNSGDEEGG---TGFMLDVYDDASVTFKGEFSASEIRNIRSVFHNTAKGTIDFKGDALFNDNGNVFRSNYGTLKFRGHTVFKNNIWLALDLMGPSSYVRFSKTATFDDNGGSFDGATGCGVA--NREGTVIFRDDALFMNHKCDEGPAVFN-GGKMKFYGKARFNDNQNQN---------DWGGGVANSDGTLLFKSAVQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAFSVSQGGQYGTSEESGFLEFKKPQVV-RYENNVILKNEFNDQLVTGCTLAYVEDGTTLEGFDVEDVCV 1283
++V G L TA+ +CDD+DNY G+ +T EIDL V++V+C D G + L E +V G S+T+KS+ SYVRFVN++F V+ GATLVFDMP T+FGPN+ +EG F ++V + A+VTF G AS++ N + F+N +G+++F+ ALF D VF N GT+KFRG F+NN + A+ + S Y+RFSK FD N D C ++ + E ++ R DA+F NH C G A++ G KFYGKA FN+N + GG V S GT+ F AVQF AF+++ G L F++P+VV R+ NN + +NE+ + CT+ +V D + GF +D+CV
Sbjct: 9 VVVAGILATASAACDDVDNYLGIPNPLTGDMEIDLEGVSSVECAEIETDAGNEILLEQIVIDGGSVTLKSS-SYVRFVNIEFDVKPGATLVFDMPETYFGPNTARKEGTWYYNSFGMNVDEGATVTFVGGVVASDVSNAFTAFYN--RGSMEFQETALFEDGTYVFYENQGTIKFRGDATFRNNRFHAIQNIF-SGYIRFSKDVLFDGNSYETDIIGTCSLSCIDEESRIVVRGDAVFQNHNCP-GVALWQLYGTTKFYGKAYFNNNSRDKTTFDYNLDGNLGGAVVVSGGTMTFNGAVQFNDNSAEAFGGGLGIEDGDVIFKKWTTFDGNSADNGAAFAMT----------GGTLTFQEPKVVTRFTNNDVYENEY--PVEESCTVGFVADEALVIGFPGDDICV 397
BLAST of mRNA_S-dermatodea_contig1346.2029.1 vs. uniprot
Match: A0A6H5KB90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB90_9PHAE) HSP 1 Score: 174 bits (440), Expect = 3.460e-46 Identity = 93/192 (48.44%), Postives = 128/192 (66.67%), Query Frame = 3
Query: 132 LLVLGALFTAARS--CDDIDNYFGMLGSVTEIDLGAVTTVDCPANDEGGDLDEILVASGTSLTIKSTQSYVRFVNVKFTVEEGATLVFDMPATWFGPNSG-DEEGGTGFMLDVYDDASVTFKGEFSASEIRNIRSVFHNTAKGTIDFKGDALFNDNGNVFRSNYGTLKFRGHTVFKNNIWLALDLMGPSSYV 698
LL L + + RS CDDID YFG + SVTEIDLG + VDCP+ D+G +L I + SG +L +KS +S+VRFVN++F VEEGA+L+FDMP T GPNS D E + F+ DV + S+TF G+F +S++ N+RSVF+N +G+I+FK D+LFN+NGNVFR+N +LA+ G S+V
Sbjct: 11 LLALALIASTVRSQECDDIDAYFGDVSSVTEIDLGTIIRVDCPSTDDGEELPYITIESGKTLAVKSEESFVRFVNLRFIVEEGASLIFDMPVTRVGPNSVVDPESASDFVFDVAEGGSLTFNGKFRSSQVFNVRSVFYN--RGSIEFKDDSLFNNNGNVFRNNEXXXXXXXXXXXXXXXYLAIVNDGEDSFV 200
BLAST of mRNA_S-dermatodea_contig1346.2029.1 vs. uniprot
Match: A0A6H5JB77_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB77_9PHAE) HSP 1 Score: 84.7 bits (208), Expect = 2.830e-14 Identity = 53/129 (41.09%), Postives = 72/129 (55.81%), Query Frame = 3
Query: 450 MLDVYDDASVTFKGEFSASEIRNIRSVFHNTAKGTIDFKGDALFNDNGNVFRSNYGTLKFRGHTVFKNNIWLALDLMGPSSYVRFSKTATFDDNGGSFDGATGCGVANREGTV-IFRDDALFMNHKCDE 833
M+ V SV F GE +A+ + N+RSVF+N A G+I+ L+F G F NNI+LA+D G S VR + ATF +NG SFDG +G G +N +G + IFR ALF ++ CDE
Sbjct: 1 MVQVLTGGSVEFLGEMAATGLANMRSVFYNEAGGSIE--------------------LRFYGDATFTNNIYLAIDNDGGS--VRINGEATFVENGRSFDGHSGGGFSNTDGGIAIFRGPALFSSNTCDE 107 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1346.2029.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1346.2029.1 >prot_S-dermatodea_contig1346.2029.1 ID=prot_S-dermatodea_contig1346.2029.1|Name=mRNA_S-dermatodea_contig1346.2029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=396bp MMSRSFTLLVLGALFTAARSCDDIDNYFGMLGSVTEIDLGAVTTVDCPANback to top mRNA from alignment at S-dermatodea_contig1346:743..10020+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1346.2029.1 ID=mRNA_S-dermatodea_contig1346.2029.1|Name=mRNA_S-dermatodea_contig1346.2029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=9278bp|location=Sequence derived from alignment at S-dermatodea_contig1346:743..10020+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1346:743..10020+ >mRNA_S-dermatodea_contig1346.2029.1 ID=mRNA_S-dermatodea_contig1346.2029.1|Name=mRNA_S-dermatodea_contig1346.2029.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2376bp|location=Sequence derived from alignment at S-dermatodea_contig1346:743..10020+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |