mRNA_S-dermatodea_contig13450.2027.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Match: A0A6H5KE40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE40_9PHAE) HSP 1 Score: 146 bits (368), Expect = 6.500e-37 Identity = 95/264 (35.98%), Postives = 145/264 (54.92%), Query Frame = 3
Query: 3 FTKLGDSILGSGVEDTNLLDVVLSQGRRLELYLANSAPSESVQDRTNAAFLKAFNTGLFKHERN-LETFIGPKRLPSGLPMDTVPSGVQAAVAKGGATVFSVMKSATADFGYKMESNEGDINQLFLNAPSSNPSYP----DIPCWGQLLVFDLPGEALKSLSEDERDEQLVRLIRIADHSQLRAMLVVGVELCRPKAALYMRVSDSCPFFYMAWETGRDIDGMAIGISIPKAATGRQALLDALKLGGDGTKHTVCVSVAKVRKK 779
FT GD++LG GVE T + + +S+GRR+E Y+ + + S+Q + ++ F KA ++G+F+ R E +GP P+GLP TVP V A+ A + TA + + + +L P P DIP WG+L+V+ P A SL+++E DE+ VRL++IA ++QL+ ML G E C P+AALY+RV+ +CP F++ E+ D + I IP+ R +L+ L GDG+ VSV VR K
Sbjct: 118 FTNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSTFHKAHSSGMFQSRRGGKEVVVGPNCSPAGLPPSTVPERVSEALK---AALEKEPDVLTASY-----TGDHHSPKLVTKKPRRASKVPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLQIATNAQLQLMLKPGTERCTPEAALYLRVAATCPVFWVRSESKTKAD-LDISCDIPQRGL-RANILETLSSSGDGSSGGA-VSVRHVRNK 370
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Match: A0A6H5KEI5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEI5_9PHAE) HSP 1 Score: 145 bits (366), Expect = 1.150e-35 Identity = 98/281 (34.88%), Postives = 152/281 (54.09%), Query Frame = 3
Query: 3 FTKLGDSILGSGVEDTNLLDVVLSQGRRLELYLANSAPSESVQDRTNAAFLKAFNTGLFKHERN-LETFIGPKRLPSGLPMDTVPSGVQAAVAKGGATVFSVMKSA--------TADFGYKME-------SNEGDIN--QLFLNAPSSNPSYP----DIPCWGQLLVFDLPGEALKSLSEDERDEQLVRLIRIADHSQLRAMLVVGVELCRPKAALYMRVSDSCPFFYMAWETGRDIDGMAIGISIPKAATGRQALLDALKLGGDGTKHTVCVSVAKVRKK 779
FT GD++LG GVE T + + +S+GRR+E Y+ + + S+Q + +++F KA ++G+F+ R E +GP LP+GLP VP V A S +K+A TA + + +GD + +L + P P DIP WG+L+V+ P A SL+++E DE+ VRL+RIA ++QL+ ML G E C P+AALY+RV+ +CP F++ E+ D + I IP+ R +L+ + GDG+ + V V VR K
Sbjct: 260 FTNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSSFHKAHSSGMFQSRRGGKEVVVGPNCLPAGLPPSNVPERVSVAA-------HSTLKAALEKEPDVLTASYTVAQTIAKTTHLTLQGDHHSPKLVMKKPRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRSESKTKAD-LDISCDIPQRGL-RANILETVSSSGDGSSGSA-VRVCHVRNK 530
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Match: A0A6H5LBJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBJ9_9PHAE) HSP 1 Score: 145 bits (366), Expect = 4.390e-35 Identity = 100/311 (32.15%), Postives = 153/311 (49.20%), Query Frame = 3
Query: 3 FTKLGDSILGSGVEDTNLLDVVLSQGRRLELYLANSAPSESVQDRTNAAFLKAFNTGLFKHERNL--ETFIGPKRLPSGLPMDTVPSGV---------QAAVAKGGATV-FSVMKSATADFGYKMESNEG--DINQLFLNAPSSNPSYP----DIPCWGQLLVFDLPGEALKSLSEDERDEQLVRLIRIADHSQLRAMLVVGVELCRPKAALYMRVSDSCPFFYMAWETGRDIDGMAIGISIPKAATGRQALLDALKLGGDGTKHTVCVSVAKVRKKHAKDASSRRPLHILPGDVVVGGPGFKHTHLSSET 881
+T GD++ E N+++ L + RR+E+++AN E V+ A+F +A+ G +K +L E I P LP GL + +P V Q A G A V + +FGY +ES EG + L P + Y D+P WGQL VF+ EA SLS DER++Q VRL+ +A++ QL+ MLV G E+C P A LY+RV+ +CP +YM W + +P++ + + L ++ G + V + R K R PL++LPG VV GF+ S++
Sbjct: 513 YTHAGDTVASLSAERHNVVEAALERSRRVEVFVANPNSKEEVRKNLLASFSRAYKAGKWKASTSLAQERVISPSCLPLGLEANVIPHEVHRFVDSTMNQEGPAMGEAEASLRVATTLAKEFGYSLESPEGWRSGSSEALLLPRRDMDYHVNSHDLPAWGQLEVFNSRPEAFHSLSVDEREDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTSKVPQSGSRAEVLGPFSQVEGHAFATPMIGRVFRARSK----TDPRSPLNVLPGFAVVRSQGFEVRESDSDS 819
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Match: A0A6H5JDB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDB1_9PHAE) HSP 1 Score: 143 bits (361), Expect = 2.260e-34 Identity = 94/281 (33.45%), Postives = 146/281 (51.96%), Query Frame = 3
Query: 3 FTKLGDSILGSGVEDTNLLDVVLSQGRRLELYLANSAPSESVQDRTNAAFLKAFNTGLFKHERN-LETFIGPKRLPSGLPMDTVPSGV----------QAAVAKGGATVFSVMKSATADFGYKMESNEGDINQLFLNAPSSNPSYP----DIPCWGQLLVFDLPGEALKSLSEDERDEQLVRLIRIADHSQLRAMLVVGVELCRPKAALYMRVSDSCPFFYMAWETGRDIDGMAIGISIPKAATGRQALLDALKLGGDGTKHTVCVSVAKVRKKHAKDASS 800
FT GD++LG GVE T + + +S+GRR+E Y+ + + S+Q + ++ F KA ++G+F+ R E +GP LP+GLP TV + V TV + T + + +L + P P DIP WG+L+V+ P A SL+++E DE+ VRL+RIA ++QL+ ML G E C P+AALY+RV+ +CP F++ WE+ D + I IP+ R +L + GDG+ S VR +H ++ S
Sbjct: 870 FTNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSTFHKAHSSGMFQSRRGGKEVVVGPNCLPAGLPPSTVXXXXXXXXXXXXEKEPDVLTASYTVAQTIAKTT----HLTLQGDHHSPKLVMKKPRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRWESKTKAD-LDISCDIPQRGL-RANILASFSSSGDGS------SGGAVRVRHVRNKPS 1138
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Match: A0A6H5K708_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K708_9PHAE) HSP 1 Score: 141 bits (355), Expect = 4.470e-34 Identity = 96/273 (35.16%), Postives = 147/273 (53.85%), Query Frame = 3
Query: 3 FTKLGDSILGSGVEDTNLLDVVLSQGRRLELYLANSAPSESVQDRTNAAFLKAFNTGLFKHERN-LETFIGPKRLPSGLPMDTVPSGVQAAVAKGGATVFSVMKSATADFGYKME-------SNEGDIN--QLFLNAPSSNPSYP----DIPCWGQLLVFDLPGEALKSLSEDERDEQLVRLIRIADHSQLRAMLVVGVELCRPKAALYMRVSDSCPFFYMAWETGRDIDGMAIGISIPKAATGRQALLDALKLGGDGTKHTVCVSVAKVRKK 779
FT GD++LG GVE T + + +S+GRR+E Y+ + + S+Q + +++F KA ++G+F+ R E +GP LP+GLP TVP V A+ A + TA F + +GD + +L + P P DIP WG+L+V+ P A SL+++E DE+ VRL+RIA ++QL+ L G E C P+AALY+RV+ +CP ++ E+ D + I IP+ R +L+ GDG+ V V VR K
Sbjct: 278 FTNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDVSKRASLQAKISSSFHKAHSSGMFQSRRGGKEVVVGPNCLPAGLPPSTVPERVSEALK---AALEKEPDVPTASFTVAQTIAKRTHLTLQGDHHSPKLVMKKPRRASKAPKEVSDIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLTLESGTERCTPEAALYLRVAATCPVLWVRSESKTKAD-LDISCDIPQRGL-RANILETFSSSGDGSSGGA-VKVRHVRNK 544
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Match: A0A6H5KBS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS8_9PHAE) HSP 1 Score: 105 bits (262), Expect = 3.600e-23 Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 3
Query: 408 DIPCWGQLLVFDLPGEALKSLSEDERDEQLVRLIRIADHSQLRAMLVVGVELCRPKAALYMRVSDSCPFFYMAWETGRDIDGMAIGISIPKAATGRQALLDALKLGGDGTKHTVCVSVAKVRKKHAKDASSRRPLHILPGDVVVGGPGFKHTHLSSET 881
D+P WGQL VF+ EA +SLS DER++Q VRL+ +A++ QL+ MLV G E+C P A LY+RV+ +CP +YM W + +P++ + + L ++ G V V + R K R PL++LPG VV GF+ S++
Sbjct: 9 DLPAWGQLEVFNSRPEAFRSLSVDEREDQRVRLLHVANNVQLKRMLVPGKEVCGPGAELYLRVAPTCPLYYMRWTNDVKQATVEFTSKVPQSGSRAEVLGPFSQVEGQAFATPVIGRVFRARSK----TDPRSPLNVLPGFAVVRSQGFEVRESDSDS 162
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Match: A0A6H5KW52_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW52_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 3.710e-20 Identity = 53/131 (40.46%), Postives = 79/131 (60.31%), Query Frame = 3
Query: 408 DIPCWGQLLVFDLPGEALKSLSEDERDEQLVRLIRIADHSQLRAMLVVGVELCRPKAALYMRVSDSCPFFYMAWETGRDIDGMAIGISIPKAATGRQALLDALKLGGDGTKHTVCVSVAKVRKKHAKDASS 800
DIP WG+L+V+ P A SL+++E DE+ VRL+RIA ++QL+ ML G E C P+AALY+RV+ +CP F++ WE+ D + I IP+ R +L + GDG+ S VR +H ++ S
Sbjct: 16 DIPVWGELIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTERCTPEAALYLRVAATCPVFWVRWESKTKAD-LDISCDIPQRGL-RANILASFSSSGDGS------SGGAVRVRHVRNKPS 138
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Match: A0A6H5JYC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYC2_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 2.130e-18 Identity = 62/191 (32.46%), Postives = 95/191 (49.74%), Query Frame = 3
Query: 3 FTKLGDSILGSGVEDTNLLDVVLSQGRRLELYLANSAPSESVQDRTNAAFLKAFNTGLFKHER-NLETFIGPKRLPSGLPMDTVPSGVQAAVAKGGATVFSVMKSATADFGYKMESNEGDINQLFLNAPSSNPSY---------------PDIPCWGQLLVFDLPGEALKSLSEDERDEQLVRLIRIADHS 527
FT GD++LG GVE T + + +S+GRR+E Y+ + + S+Q + ++ F KA ++G+F+ R E +GP LP+GLP TVP V A+ TA Y + L L +P DIP WG+L+V+ A SL+++E DE+ VRL+RIA ++
Sbjct: 278 FTNAGDTVLGVGVESTTVAEDAISRGRRVEFYVTDESKRASLQAKISSTFHKAHSSGMFQSRRVGKEVVVGPNCLPAGLPPSTVPERVSGALKAALEKEPDEPDVLTAS--YTVAQTIAKTTHLTLQGDHHSPKLMTKKPRRASKARKEVSDIPVWGELIVYPSAQAAKDSLTQEEVDEEYVRLLRIATNA 466
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Match: A0A6H5JUE7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE7_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 7.230e-18 Identity = 40/74 (54.05%), Postives = 54/74 (72.97%), Query Frame = 3
Query: 408 DIPCWGQLLVFDLPGEALKSLSEDERDEQLVRLIRIADHSQLRAMLVVGVELCRPKAALYMRVSDSCPFFYMAW 629
D+P WGQL VF+ EA +SLS DER++Q VRL+ +A++ QL+ MLV G E C P A LY+RV+ +CP +YM W
Sbjct: 9 DLPAWGQLEVFNSRPEAFRSLSLDEREDQRVRLLHVANNVQLKRMLVPGKEGCGPGAELYLRVAPTCPLYYMRW 82
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Match: A0A6H5K9C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9C3_9PHAE) HSP 1 Score: 72.4 bits (176), Expect = 4.580e-11 Identity = 63/215 (29.30%), Postives = 96/215 (44.65%), Query Frame = 3
Query: 198 ETFIGPKRLPSGLPMDTVPSGV----------QAAVAKGGATVFSVMKSATADFGYKMESNEGDINQLFLNAPSSNPSYP----DIPCWGQLLVFDLPGEALKSLSEDERDEQLVRLIRIADHSQLRAMLVVGVELCRPKAALYMRVSDSCPFFYMAWETGRDIDGMAIGISIPKAATGRQALLDALKLGGDGTKHTVCVSVAKVRKKHAKDASS 800
E +GP LP+GLP TV + V TV + T + + +L + P P +IP WG+ +V+ P A SL+++E DE+ VRL+RIA ++QL+ ML G E LY RV+ +CP F++ E+ D + I IP+ R +L+ GDG+ S VR +H ++ S
Sbjct: 10 EVVVGPNCLPAGLPPSTVXXXXXXXXXXXXEKEPDVLTASYTVAQTIAKTT----HLTLQGDHHSPKLVMKKPRRASKAPKEVSNIPVWGESIVYPSPQAAKDSLTQEEVDEEYVRLLRIATNAQLQLMLEPGTE------PLYWRVAATCPVFWVRSESKTKAD-LDISCDIPQRGL-RANILETFSSSGDGS------SGGAVRVRHVRNKPS 206 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13450.2027.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13450.2027.1 >prot_S-dermatodea_contig13450.2027.1 ID=prot_S-dermatodea_contig13450.2027.1|Name=mRNA_S-dermatodea_contig13450.2027.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=241bp MDTVPSGVQAAVAKGGATVFSVMKSATADFGYKMESNEGDINQLFLNAPSback to top mRNA from alignment at S-dermatodea_contig13450:497..2418- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig13450.2027.1 ID=mRNA_S-dermatodea_contig13450.2027.1|Name=mRNA_S-dermatodea_contig13450.2027.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1922bp|location=Sequence derived from alignment at S-dermatodea_contig13450:497..2418- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig13450:497..2418- >mRNA_S-dermatodea_contig13450.2027.1 ID=mRNA_S-dermatodea_contig13450.2027.1|Name=mRNA_S-dermatodea_contig13450.2027.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at S-dermatodea_contig13450:497..2418- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |