mRNA_S-dermatodea_contig1345.2026.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1345.2026.1
Unique NamemRNA_S-dermatodea_contig1345.2026.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Match: D7G8E8_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E8_ECTSI)

HSP 1 Score: 344 bits (882), Expect = 1.140e-113
Identity = 194/360 (53.89%), Postives = 226/360 (62.78%), Query Frame = 1
Query:    7 KIDGRWLVSGSKKPKVGIFSIPGEKAHDAAWKCQDAGIALAPLDRRESQSLFAVFDGHGANGREASRECMERLPKYLISAS-RLGDPASALRRTCQRLHRDLAMGVAGDCARSGTTLCAAVLTGRRLTVANVGDSGCLRISR-VVDERCRFGAHTAIGSGVVESEASAAGRRR--EVVDVETGHRGSGRR-------------------------------VVVERLSRDHKPECSDELQRIQAAGGVVFPLQSTGVREGRYVSGVPTAVPGRRQEGTE-----TVRDFGKEVSRVWRPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRTDVMLVLASDGVWDVMSEQDIRKV 966
            +++GRW  +GS +P VGI+SI GEKAHD  WK QDAG+ +AP DRRE Q+LFA+FDGHG NG +ASRECMERLPK+L SAS + G PASALRR+CQRLH DLA GVAGDC RSGTTLCAAVL GRRLTVANVGDSGCLR+SR                   +  +A+ A  R   +VVD   G                                      +V ERLSRDHKPE   EL+RI+AAGG+VFPL  +G   G               EG++       R     + RVW   G GPGLAMSRS+GDKMAHS+GVTYEPEITE DLD R+DVMLV ASDGVWDV+S +DIRKV
Sbjct:    3 RLEGRWASAGSTEPNVGIYSIAGEKAHDPLWKNQDAGLVIAPFDRREGQALFAIFDGHGKNGGQASRECMERLPKHLASASSQSGSPASALRRSCQRLHHDLATGVAGDCGRSGTTLCAAVLAGRRLTVANVGDSGCLRLSRSTAAASXXXXXXXXXXXXXIPGKAALASDRGTPDVVDKAGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLVTERLSRDHKPESKGELERIRAAGGIVFPLPRSG-SGGXXXXXXXXXXXXXXXEGSKKGLKTAARGIAAGIPRVWTASGDGPGLAMSRSIGDKMAHSVGVTYEPEITEFDLDKRSDVMLVFASDGVWDVLSAEDIRKV 361          
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Match: A0A2P6TSH7_CHLSO (Protein-serine/threonine phosphatase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TSH7_CHLSO)

HSP 1 Score: 113 bits (283), Expect = 7.400e-25
Identity = 97/284 (34.15%), Postives = 123/284 (43.31%), Query Frame = 1
Query:  106 QDAGIALAPLDRRESQSLFAVFDGHGANGREASRECMERLPKYLISASRLG-DPASALRRTCQRLHRDLAMGVAGDCARSGTTLCAAVLTGRRLTVANVGDSGCLRISRVVDERCRFGAHTAIGSGVVESEASAAGRRREVVDVETGHRGSGRRVVVER-LSRDHKPECSDELQRIQAAGGVVFPLQSTGVREGRYVSGVPTAVPGRRQEGTETVRDFGKEVSRVWRPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRTDVMLVLASDGVWDVMSEQ 951
            QDA  A   L        F VFDGHG  G E ++   ++LP  L     L  +P  AL      ++  L      D + SGTT C AVL GR L +ANVGDS       VV ER       A GS      +  AG             GSG   +V R LS+D  P   DE  R+  AG  V  L      EG    G+P               D   +  R+W P G  PG A +RS+GD  A  +GV  +PE+    L P+    +VLA+DGVW+ +S Q
Sbjct:   89 QDAVRAAEGLGGNAEAHFFGVFDGHGEFGTECAQFVKDKLPTVLAGEPTLASNPDKALHSALVSVNSQLHASPVDD-SLSGTTACCAVLQGRTLYIANVGDSRA-----VVAER------PAAGSKAASEGSEGAG----------SSSGSGATELVARDLSQDQTPFRLDECHRVLQAGARVLTLDQL---EGLKDPGLPCWT---------NEADCDGDPPRLWSPNGMFPGTAFTRSIGDSAAEDIGVIPDPEVLATQLGPQH-AFVVLATDGVWEFISSQ 337          
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Match: A0A087SFG7_AUXPR (PPM-type phosphatase domain-containing protein n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SFG7_AUXPR)

HSP 1 Score: 113 bits (283), Expect = 2.880e-24
Identity = 93/235 (39.57%), Postives = 112/235 (47.66%), Query Frame = 1
Query:  256 GDPASALRRTCQRLHRDLAMGVAG-DCARSGTTLCAAVLTGRRLTVANVGDSGCLRISRVVDERCRFGAHTAIGSGVVESEASAAGRRREVVDVETGHRGSGRRVVVERLSRDHKPECSDELQRIQAAGGVVFPLQSTGVREGRYVSGVPTAVPGRRQEGTETVRDFGKEVSRVWRPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRTDVMLVLASDGVWDVMSEQDI 957
            G P  AL   C  +H  L  G AG D + SGTT C A+L GRRL VANVGDS  + +        R GA    G G   +EA                          RL+RD KP+  +E  RI AAGG V           R ++  P  VP          R F  +      PG + PGLAMSRSLGD  AH+LGV   P +T   L+ R D+ LVLASDGVWDVMS+ D+
Sbjct:  101 GVPGQALAAACLEVHAGLVQGDAGLDASASGTTACVALLAGRRLLVANVGDSRAVLV--------RAGA----GGGNAPAEAL-------------------------RLTRDAKPDDPEEAARIAAAGGSV-----------RRLTDDPDDVP----------RVFAAD------PGSTTPGLAMSRSLGDAAAHTLGVCATPRLTGHVLEER-DLALVLASDGVWDVMSDADV 270          
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Match: A0A1R2AR45_9CILI (PPM-type phosphatase domain-containing protein n=2 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AR45_9CILI)

HSP 1 Score: 110 bits (275), Expect = 9.860e-24
Identity = 95/288 (32.99%), Postives = 131/288 (45.49%), Query Frame = 1
Query:  106 QDAGIALAPLDRRESQSLFAVFDGHGANGREASRECMERLPKYLIS-ASRLGDPASALRRTCQRLHRDLAMGVAGDCARSGTTLCAAVLTGRRLTVANVGDSGCLRISRVVDERCRFGAHTAIGSGVVESEASAAGRRREVVDVETGHRGSGRRVVVERLSRDHKPECSDELQRIQAAGGVVFPLQSTGVREGRYVSGVPTAVPGRRQEGTETVRDFGKEVSRVWRPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRTDVMLVLASDGVWDVMSEQDIRKV 966
            QD+ I +  L   +  + F V DGHG NG+E S    ER P  L    + LG+P  AL     + + DLA     D   SG+T  + ++ G++L  AN+GDS      ++ D    + ++  I S  +                       G   +   LSRDHKP  SDE  RI   GG V   Q                         E    FG   +RVW    + PGLAMSRSLGD++A S+GV  EPEI E DL P  D  +VL SDG+++ +S +D+ K+
Sbjct:  145 QDSFITIQNLT--DECTFFGVADGHGINGKEVSSFIKERFPILLSKDPNLLGNPRKALSVCANKTNLDLAHQEF-DVNFSGSTFVSILIRGKKLWCANIGDSRAFIARQLPDT---YQSYKNIRSKPI-----------------------GNHWMSIALSRDHKPNESDESSRILKHGGRVEAYQD------------------------EHGNPFGP--ARVWLKNQNIPGLAMSRSLGDRVAGSVGVICEPEILEFDLTPE-DKFIVLGSDGIFEFLSNEDVLKI 376          
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Match: A0A835YTT3_9STRA (Phosphatase 2C-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT3_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.110e-23
Identity = 104/304 (34.21%), Postives = 129/304 (42.43%), Query Frame = 1
Query:   49 KVGIFSIPGEKAHDAAWKCQDAGIALAPLDRRESQSLFAVFDGHGANGREASRECMERLPKYLISASRLGDPASALRRTCQRLHRDLAMGVAGDCARSGTTLCAAVLTGR-RLTVANVGDSGCLRISRVVDERCRFGAHTAIGSGVVESEASAAGRRREVVDVETGHRGSGRRVVVERLSRDHKPECSDELQRIQAAGGVVFPLQSTGVREGRYVSGVPTAVPGRRQEGTETVRDFGKEVSRVW-RPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRT-DVMLVLASDGVWDVMSEQ 951
            + G+ SI G K  +  W+ QD  +    LD         VF     +G EA      R  + L    R     +A  R C  LH DLA GV  DC  SG T     ++ R  +TVAN+GDS C      V  R   G                A R+                V    L+ DHKP+  DE  RIQAAGG V   Q         + G   A P R   G           +RVW +  G   GLAMSRS+GD +AH+ GV+ +PE+ E  LD    D  LVLASDGVWDV+  Q
Sbjct:   43 RAGVCSIQGLKPGNPRWENQDNFVMEEALDIDGGGDRLRVFAVLDGHG-EAGHLVTRRCRERLPQLLRAARGDAA--RACVALHEDLASGVHVDCQCSGATCVVVTISARGAVTVANLGDSRC------VLGRWECGGXXXXXXXXXXXMVGRAQRQ----------------VCAVPLTTDHKPDRPDERARIQAAGGQVGSRQ--------LIVGSGPAGPIRIPMGP----------ARVWYQVRGETMGLAMSRSIGDVIAHAAGVSAQPEVVEHCLDRDAGDAFLVLASDGVWDVLDAQ 303          
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Match: A0A835YZ58_9STRA (Phosphatase 2C-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZ58_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.270e-22
Identity = 87/253 (34.39%), Postives = 112/253 (44.27%), Query Frame = 1
Query:  265 ASALRRTCQRLHRDLAMGVAGDC--------------------ARSGTTLCAAVLTGRRLTVANVGDSGCLRISRVVDERCRFGAHTAIGSGVVESEASAAGRRREVVDVETGHRGSGRRVVVERLSRDHKPECSDELQRIQAAGGVVFPLQSTGVREGRYVSGVPTAVPGRRQEGTETVRDFGKEVSRVWRPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRTDVMLVLASDGVWDVMSEQDIRK 963
            A AL   C +L R+LA     D                     A+SGTT C AV+    LTVANVGDS  L +              A   G   S  S                         +L+ DHKP    E QRI A+GG+V P     V   +   G P A  G      E     G+  SRVW P G GPGLAMSRSLGD +AH +GVT+EPE+ +  L    D +LV+ SDG+WD++  +++ +
Sbjct:  297 AEALAHVCAQLQRELASAPMVDASHLPCHHLDPANLNLNPLFAAQSGTTACIAVVEDGVLTVANVGDSRALLLQH------------ASTPGTPPSWTSL------------------------QLTADHKPNVDSERQRILASGGLVGPTPERAVMNCQ--GGAPLA--GAAAAAAEGGARRGRLPSRVWMPAGDGPGLAMSRSLGDLVAHQIGVTHEPEVCQRVLSAG-DRVLVVGSDGIWDMLPNEEVTE 508          
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Match: A0A1R2BH74_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BH74_9CILI)

HSP 1 Score: 105 bits (262), Expect = 8.650e-22
Identity = 96/303 (31.68%), Postives = 138/303 (45.54%), Query Frame = 1
Query:   67 IPGEKAHDAAWK-CQDAGIALAPLDRRESQSLFAVFDGHGANGREASRECMERLPKYLIS-ASRL-GDPASALRRTCQRLHRDLAMGVAGDCARSGTTLCAAVLTGRRLTVANVGDSGCLRISRVVDERCRFGAHTAIGSGVVESEASAAGRRREVVDVETGHRGSGRRVVVE--RLSRDHKPECSDELQRIQAAGGVVFPLQST-GVREGRYVSGVPTAVPGRRQEGTETVRDFGKEVSRVWRPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRTDVMLVLASDGVWDVMSEQDI 957
            IPG        K CQD  + L       S  L A+FDGHG++G + S+ C + + KY    AS L  DP S L +  +    +L M    D   SG+T          + V  +GD  CL  + V D R   G  T     V+ +  +  G  R+V++     RGS    +++  +L++D KPE  +E  RI  +GG V  L  T G R G +                           RVW    + PGLAMSRS+GD +   +GV   P  T+  ++  +D+ ++LASDGVWDVM   D+
Sbjct:   77 IPGLDPRGECGKVCQDNCVFL----NSGSSILLALFDGHGSDGDKVSQFCCKFVEKYYFDGASNLEADPNSFLIKLMEECDHELRMR-GFDILYSGST---------GVIVIYIGD--CLYSASVGDSRAILG--TTNPPAVLPAPVANLGEERKVLESVKFRRGSKSNPLIQPVQLTKDQKPEDPEEFDRIVKSGGRVQRLLDTDGNRIGPF---------------------------RVWELSSNAPGLAMSRSIGDLIGKKIGVISTPICTKHLINLESDLFIILASDGVWDVMDNDDV 334          
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Match: A0A4D9D7H3_9STRA (PPM-type phosphatase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D7H3_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.530e-21
Identity = 100/312 (32.05%), Postives = 135/312 (43.27%), Query Frame = 1
Query:  100 KCQDAGIALAPLDRRESQSLFAVFDGHGANGREASRECMERLPKYLISASRLG-DPASALRRTCQRLHRDLAMGVAGDCARSGTTLCAAVLTGRRLTVANVGDSGCLRISRVVDERCRFGAHTAIGSGVVESEASAAGRRREVVDVETGHRGSGRRVVVER----------------------LSRDHKPECSDELQRIQAAGGVVFPLQSTGVREGRYVSGVPTAVPGRRQEGTETVRDFGKEVSRVWRPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRTDVMLVLASDGVWDVMSEQDIRKV 966
            K QDA I     +   S   F V DGHG  G   S      + + L +      DP  A+      L   L      D A SGTTL A +L G R+ V NVGDS   R++  + +      +TA  S    S  S+   ++E +   T  +  G   +  R                      LS DHKP+ + E  RI AA G VF +        RY  GV                      +RVW      PGLAMSRSLGD +AH++GV+ EPE+ E  LD   DV LVLA+DG+W+ MS+ ++ ++
Sbjct:  137 KNQDALIMAE--EPHTSTLFFCVLDGHGEFGELVSGFFQREMARNLFAHDHFEQDPRRAVIEVVAALESALVQDRRIDTAFSGTTLTAVLLRGDRVLVFNVGDS---RVTVALHDA----PNTADASVSSTSRESSMPMKKETLAC-TPSKARGLSFLSRRSLSLSAASNSPSPPTPPLRSIRLSIDHKPDVAAEKARILAANGRVFAV--------RYDDGVDGP-------------------ARVWLKDLDVPGLAMSRSLGDVVAHTVGVSSEPEVFEYTLDSARDVFLVLATDGLWEFMSDAEVVRM 411          
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Match: A0A1R2AN80_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AN80_9CILI)

HSP 1 Score: 103 bits (257), Expect = 2.760e-21
Identity = 89/270 (32.96%), Postives = 119/270 (44.07%), Query Frame = 1
Query:  157 LFAVFDGHGANGREASRECMERLPKYLISASR-LGDPASALRRTCQRLHRDLAMGVAGDCARSGTTLCAAVLTGRRLTVANVGDSGCLRISRVVDERCRFGAHTAIGSGVVESEASAAGRRREVVDVETGHRGSGRRVVVERLSRDHKPECSDELQRIQAAGGVVFPLQSTGVREGRYVSGVPTAVPGRRQEGTETVRDFGKEVSRVWRPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRTDVMLVLASDGVWDVMSEQDIRK 963
            LF V DGHG NG   S    ER P  L S    L  P  A+  +  RL++++      D   SG+T  + +  G++L  ANVGDS  L + R + E+                               T  +G+    +   LSRDHKP  SDE  RI + GG V   Q                         E    FG   SRVW    + PGLAMSRS GDK+A ++GV  EPEI E +L    D  +V+ SDG+++ +S +DI K
Sbjct:  159 LFGVADGHGINGEYVSGYIKERYPSLLSSNPYFLSTPIRAMSISASRLNKEIG-SKDFDTNFSGSTFISVLFRGKKLWCANVGDSRAL-LGRQIPEK-------------------------------TSSKGNSNHWMSIALSRDHKPNESDESARILSHGGRVEAYQD------------------------EHGNPFGP--SRVWLKSQNIPGLAMSRSFGDKVAGTVGVICEPEILEFEL-CADDKFVVIGSDGIFEFLSNEDIVK 368          
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Match: A0A1R2ANR9_9CILI (PPM-type phosphatase domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2ANR9_9CILI)

HSP 1 Score: 94.7 bits (234), Expect = 4.840e-18
Identity = 89/315 (28.25%), Postives = 133/315 (42.22%), Query Frame = 1
Query:   37 SKKPKVGIFSIPGEKAHDAAWK-CQDAGIALAPLDRRESQSLFAVFDGHGANGREASRECMERLPKYLISASRL--GDPASALRRTCQRLHRDLAMGVAG-DCARSGTTLCAAVLTGRRLTVANVGDSGCLRISRVVDERCRFGAHTAIGSGVVESEASAAGRRREVVDVETGHRGS--GRRVVVERLSRDHKPECSDELQRIQAAGGVVFPLQSTGVREGRYVSGVPTAVPGRRQEGTETVRDFGKEVS--RVWRPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRTDVMLVLASDGVWDVMSEQDI 957
            S+K  +    +PG        K CQD    L+  +      L  +FDGHG  G +    C   + K+   +  L   +P   +R    +   +L    +G D   SG T     +T   +   +VGDS  +  +    E             V+ +  ++ G  R+++      R S  GR++   +L+RD KPE  +E +RI  AGG V  L+                             + G E+   RVWR     PGLAMSRS+GDK+A SLGV  EP  T        D+ +V+ASDG+WD M  +D+
Sbjct:   64 SEKILISSCVLPGFDPRGEHKKACQDNCFYLSSTEG----ILCCLFDGHGDEGEKVVAFCERVIEKFFTKSKSLFTDNPYEFIRNATIKCDSELLKKSSGIDSEYSGCTGVIICITATDIYCGSVGDSRGIIATTSTPE-------------VLPAPPASLGEERKILAEIKRKRKSFIGRKINSIQLTRDQKPEDPEEKERILKAGGRVQKLKD----------------------------EIGNEIGPFRVWRKNEDTPGLAMSRSIGDKVAKSLGVISEPVCTSYKRS-SDDLFIVIASDGIWDAMDNKDV 332          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1345.2026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8E8_ECTSI1.140e-11353.89PPM-type phosphatase domain-containing protein n=1... [more]
A0A2P6TSH7_CHLSO7.400e-2534.15Protein-serine/threonine phosphatase n=1 Tax=Chlor... [more]
A0A087SFG7_AUXPR2.880e-2439.57PPM-type phosphatase domain-containing protein n=1... [more]
A0A1R2AR45_9CILI9.860e-2432.99PPM-type phosphatase domain-containing protein n=2... [more]
A0A835YTT3_9STRA2.110e-2334.21Phosphatase 2C-containing protein n=1 Tax=Tribonem... [more]
A0A835YZ58_9STRA1.270e-2234.39Phosphatase 2C-like domain-containing protein n=1 ... [more]
A0A1R2BH74_9CILI8.650e-2231.68PPM-type phosphatase domain-containing protein n=1... [more]
A0A4D9D7H3_9STRA1.530e-2132.05PPM-type phosphatase domain-containing protein n=2... [more]
A0A1R2AN80_9CILI2.760e-2132.96PPM-type phosphatase domain-containing protein n=1... [more]
A0A1R2ANR9_9CILI4.840e-1828.25PPM-type phosphatase domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1345contigS-dermatodea_contig1345:16699..19014 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score347.4
Seed ortholog evalue7e-93
Seed eggNOG ortholog2880.D7G8E8
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-14_002780.1
Exons5
Model size966
Cds size966
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1345.2026.1prot_S-dermatodea_contig1345.2026.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1345 16699..19014 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924286.480648-CDS-S-dermatodea_contig1345:16698..168331622924286.480648-CDS-S-dermatodea_contig1345:16698..16833Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1345 16699..16833 -
1694079151.7342541-CDS-S-dermatodea_contig1345:16698..168331694079151.7342541-CDS-S-dermatodea_contig1345:16698..16833Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1345 16699..16833 -
1622924286.4920955-CDS-S-dermatodea_contig1345:17209..177621622924286.4920955-CDS-S-dermatodea_contig1345:17209..17762Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1345 17210..17762 -
1694079151.7536316-CDS-S-dermatodea_contig1345:17209..177621694079151.7536316-CDS-S-dermatodea_contig1345:17209..17762Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1345 17210..17762 -
1622924286.5027976-CDS-S-dermatodea_contig1345:18075..181781622924286.5027976-CDS-S-dermatodea_contig1345:18075..18178Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1345 18076..18178 -
1694079151.7694955-CDS-S-dermatodea_contig1345:18075..181781694079151.7694955-CDS-S-dermatodea_contig1345:18075..18178Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1345 18076..18178 -
1622924286.5137327-CDS-S-dermatodea_contig1345:18525..186191622924286.5137327-CDS-S-dermatodea_contig1345:18525..18619Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1345 18526..18619 -
1694079151.781799-CDS-S-dermatodea_contig1345:18525..186191694079151.781799-CDS-S-dermatodea_contig1345:18525..18619Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1345 18526..18619 -
1622924286.526897-CDS-S-dermatodea_contig1345:18933..190141622924286.526897-CDS-S-dermatodea_contig1345:18933..19014Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1345 18934..19014 -
1694079151.7935355-CDS-S-dermatodea_contig1345:18933..190141694079151.7935355-CDS-S-dermatodea_contig1345:18933..19014Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1345 18934..19014 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1345.2026.1

>prot_S-dermatodea_contig1345.2026.1 ID=prot_S-dermatodea_contig1345.2026.1|Name=mRNA_S-dermatodea_contig1345.2026.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=322bp
VFKIDGRWLVSGSKKPKVGIFSIPGEKAHDAAWKCQDAGIALAPLDRRES
QSLFAVFDGHGANGREASRECMERLPKYLISASRLGDPASALRRTCQRLH
RDLAMGVAGDCARSGTTLCAAVLTGRRLTVANVGDSGCLRISRVVDERCR
FGAHTAIGSGVVESEASAAGRRREVVDVETGHRGSGRRVVVERLSRDHKP
ECSDELQRIQAAGGVVFPLQSTGVREGRYVSGVPTAVPGRRQEGTETVRD
FGKEVSRVWRPGGSGPGLAMSRSLGDKMAHSLGVTYEPEITEVDLDPRTD
VMLVLASDGVWDVMSEQDIRKV
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mRNA from alignment at S-dermatodea_contig1345:16699..19014-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1345.2026.1 ID=mRNA_S-dermatodea_contig1345.2026.1|Name=mRNA_S-dermatodea_contig1345.2026.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2316bp|location=Sequence derived from alignment at S-dermatodea_contig1345:16699..19014- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCTTCAAAATCGACGGTCGGTGGCTCGTCTCGGGGTCAAAGAAGCCGAA AGTGGGCATCTTCTCCATCCCCGGAGAAAAGGTAGGTGTTGTGCAAGCGT ACGTTTTGCCATAACGTCGACGAGGCGACAATCGTGTCTTGGTAGACACG AACTCGCACGCCATCAGTCATCTCCCTAATTGGTAGGTACATAGTGCTCT AACCGAGCTGAATGGAAATAGAGTGGCGTGTGCCTGGCGGCGGCGACACA CGCTCTGGCCTGCACGAGGTTAGACGCCAGTCGCCCTCTCGTGCAAACGA CAAGATTTTGCTTTCTCACCGGCTGGACGATCACATTTCGATGGCTGCTT GCTCTGTCTTTAACCCTATAAAAAACTGCCACGGGGACGGTACAGGCGCA CGACGCCGCCTGGAAATGCCAGGACGCCGGCATAGCCCTCGCCCCGCTCG ATCGAAGAGAGAGTCAGTCTCTCTTTGCTGTGTTTGACGGTGAGTTGTAT CATATAGTAGCGCCTAGGTTCTGTCCTTTTTGGCGCGGGTGTCGAGGTCT CACTAAACACACGACTTTTGTATTGCGTACAGAAAACACCGCTACGAGGT CTGTCGGGCCCCTTGATGGTTTGATATGTTTTATTCAAGCTGCTCCATTT TGGCAGGAAATGGTGAAAGCCCACATGTACTTGAGTTTGGAAGGCCGCCT TAGGGCAGGTACCCGGATGCAGTTGTACCTTCTGGGTCAGGTCGAACGCC AACCTGACACCAGCAATAGACCCCCTAAACCCTCCTATTGATACGACTGT AGATGCCATCGAATTGGGCCTTCCTTGTGCGACCAGGTCACGGCGCCAAT GGACGAGAGGCATCCCGGGAATGCATGGAGCGCCTTCCAAAATACCTCAT TTCCGCTTCTCGATTAGGCGATCCCGCGTCGGCTCTCCGGTAAGAGGAGC ATACCAAGCGCCTGTCTTTAATAGCTCTAAAGAGTTGCCCGTATATGCGT GCGCTGCGTGCGTCACCATTTTCCAAGACAGCTACCTCACAACTACTAAT GACTTCGAAAACGATGCAACTGCTATGTGGGGTACAGTGCTCACTGGAAG CCAACACATGGATCCTCGTACTCAATGCATCTTCTTCCCTCCACCCATCT TCAAAATGGTGCATCTGTCGCGAAACAAAAAAAGTATCTTCAAATCACTG TGGTTTATGCACACTCGGATTCCCGCCCCCGATTCGACCCCGGGAATACC AGGCGCACTTGTCAACGTCTCCACCGTGATCTCGCAATGGGTGTGGCGGG AGATTGCGCGCGCAGCGGCACGACCCTTTGCGCAGCAGTCCTCACTGGGC GGCGTTTAACCGTTGCCAACGTTGGCGATTCCGGTTGCTTGCGCATATCG CGAGTGGTAGATGAAAGGTGCCGTTTCGGAGCTCATACTGCTATCGGGAG CGGTGTTGTCGAGTCCGAAGCCTCGGCCGCGGGTAGAAGAAGAGAAGTCG TAGACGTCGAAACGGGACATCGAGGATCTGGTCGGCGAGTGGTTGTGGAG CGGCTTTCTAGAGATCACAAGCCAGAGTGCAGTGATGAACTCCAGAGGAT CCAAGCTGCAGGCGGGGTGGTTTTCCCCCTGCAAAGCACGGGGGTAAGAG AGGGAAGGTATGTGAGTGGTGTACCAACCGCGGTACCGGGGAGGCGTCAG GAAGGGACCGAGACGGTGCGAGATTTTGGGAAAGAGGTCTCCAGAGTGTG GAGACCTGGTGGTAGTGGCCCTGGGCTGGCGATGAGCAGGTCCCTCGGTG ATAAGGTGAATACTGAATACACTTTTCCCTTTAGTGGGTGTCTACGACGA CTCTGAACCTTGCGTGGCCTCATCGACAATTTCAATAAGGTTGCCTTGAA CTTGTTGAGTGATCGTGTCCACCAAATACTAAGATCAGTGCATCGGCTAC CGCCGAAATGTCACGCATGGTACTTTTGACAGCACGGATTCCCCTCAAGA TCGTTACCAACTTTCTCGCTCTGCAAACCCAGCGTTCGCTCATTCTTGAT TGTGATTTGTTTCACGCCTTGCATACTGTAGAACCTATTTGCACGCAGTT ACCATGTTTTTAGTGCTTCTTGCGCCGTCAAAAGTTGACGAACGCCGCGC ACCGGGCGGACCGTCCCTTTCTCTTCTGCAGATGGCTCACAGCTTAGGGG TGACCTATGAACCCGAGATCACGGAAGTCGATCTAGACCCACGCACTGAC GTAATGCTGGTGCTTGCGTCTGACGGCGTTTGGGACGTGATGAGCGAGCA AGATATTCGTAAGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1345:16699..19014-

>mRNA_S-dermatodea_contig1345.2026.1 ID=mRNA_S-dermatodea_contig1345.2026.1|Name=mRNA_S-dermatodea_contig1345.2026.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1932bp|location=Sequence derived from alignment at S-dermatodea_contig1345:16699..19014- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCTTCAAAATCGACGGTCGGTGGCTCGTCTCGGGGTCAAAGAAGCCGAA
AGTGGGCATCTTCTCCATCCCCGGAGAAAAGGTCTTCAAAATCGACGGTC
GGTGGCTCGTCTCGGGGTCAAAGAAGCCGAAAGTGGGCATCTTCTCCATC
CCCGGAGAAAAGGCGCACGACGCCGCCTGGAAATGCCAGGACGCCGGCAT
AGCCCTCGCCCCGCTCGATCGAAGAGAGAGTCAGTCTCTCTTTGCTGTGT
TTGACGGCGCACGACGCCGCCTGGAAATGCCAGGACGCCGGCATAGCCCT
CGCCCCGCTCGATCGAAGAGAGAGTCAGTCTCTCTTTGCTGTGTTTGACG
GTCACGGCGCCAATGGACGAGAGGCATCCCGGGAATGCATGGAGCGCCTT
CCAAAATACCTCATTTCCGCTTCTCGATTAGGCGATCCCGCGTCGGCTCT
CCGGTCACGGCGCCAATGGACGAGAGGCATCCCGGGAATGCATGGAGCGC
CTTCCAAAATACCTCATTTCCGCTTCTCGATTAGGCGATCCCGCGTCGGC
TCTCCGGCGCACTTGTCAACGTCTCCACCGTGATCTCGCAATGGGTGTGG
CGGGAGATTGCGCGCGCAGCGGCACGACCCTTTGCGCAGCAGTCCTCACT
GGGCGGCGTTTAACCGTTGCCAACGTTGGCGATTCCGGTTGCTTGCGCAT
ATCGCGAGTGGTAGATGAAAGGTGCCGTTTCGGAGCTCATACTGCTATCG
GGAGCGGTGTTGTCGAGTCCGAAGCCTCGGCCGCGGGTAGAAGAAGAGAA
GTCGTAGACGTCGAAACGGGACATCGAGGATCTGGTCGGCGAGTGGTTGT
GGAGCGGCTTTCTAGAGATCACAAGCCAGAGTGCAGTGATGAACTCCAGA
GGATCCAAGCTGCAGGCGGGGTGGTTTTCCCCCTGCAAAGCACGGGGGTA
AGAGAGGGAAGGTATGTGAGTGGTGTACCAACCGCGGTACCGGGGAGGCG
TCAGGAAGGGACCGAGACGGTGCGAGATTTTGGGAAAGAGGTCTCCAGAG
TGTGGAGACCTGGTGGTAGTGGCCCTGGGCTGGCGATGAGCAGGTCCCTC
GGTGATAAGGCGCACTTGTCAACGTCTCCACCGTGATCTCGCAATGGGTG
TGGCGGGAGATTGCGCGCGCAGCGGCACGACCCTTTGCGCAGCAGTCCTC
ACTGGGCGGCGTTTAACCGTTGCCAACGTTGGCGATTCCGGTTGCTTGCG
CATATCGCGAGTGGTAGATGAAAGGTGCCGTTTCGGAGCTCATACTGCTA
TCGGGAGCGGTGTTGTCGAGTCCGAAGCCTCGGCCGCGGGTAGAAGAAGA
GAAGTCGTAGACGTCGAAACGGGACATCGAGGATCTGGTCGGCGAGTGGT
TGTGGAGCGGCTTTCTAGAGATCACAAGCCAGAGTGCAGTGATGAACTCC
AGAGGATCCAAGCTGCAGGCGGGGTGGTTTTCCCCCTGCAAAGCACGGGG
GTAAGAGAGGGAAGGTATGTGAGTGGTGTACCAACCGCGGTACCGGGGAG
GCGTCAGGAAGGGACCGAGACGGTGCGAGATTTTGGGAAAGAGGTCTCCA
GAGTGTGGAGACCTGGTGGTAGTGGCCCTGGGCTGGCGATGAGCAGGTCC
CTCGGTGATAAGATGGCTCACAGCTTAGGGGTGACCTATGAACCCGAGAT
CACGGAAGTCGATCTAGACCCACGCACTGACGTAATGCTGGTGCTTGCGT
CTGACGGCGTTTGGGACGTGATGAGCGAGCAAGATATTCGTAAGGTGATG
GCTCACAGCTTAGGGGTGACCTATGAACCCGAGATCACGGAAGTCGATCT
AGACCCACGCACTGACGTAATGCTGGTGCTTGCGTCTGACGGCGTTTGGG
ACGTGATGAGCGAGCAAGATATTCGTAAGGTG
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