mRNA_S-dermatodea_contig13446.2024.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13446.2024.1
Unique NamemRNA_S-dermatodea_contig13446.2024.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Match: A0A6H5JFW9_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFW9_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 3.310e-71
Identity = 137/262 (52.29%), Postives = 164/262 (62.60%), Query Frame = 1 
Query:    1 LFSQFGTPEYVAPEVLNGCGHGLAVDLWALGVLVYELLVGQTPFKAGSVDEMYERVAAGDYAFPPPPA-------------------------------------------RKSPSA-SKSHSHKGIANVAGGATGSXXXXXSRRVSKKEALSRAK----DSRPEELENGAQNPAAQALVKSLLRLAPARRPSIAEIKAHAFFAEVNFDALRAAVRAQADADEEEAVVSAAINGGDVWLREQPVTCMSEDVEDNYGGVFAGF 642
            L+SQFGTPEYVA EVL+GCGHG+ VDLWALGVL+YELLVGQTPFK+ SV+EMYER+A GDYAFP PPA                                           +KS S+ S + S KG   +A G  G+         +K +   R K    DS       GAQ+PAAQ+LVK+LL L P+RRPS+ E+K H FFA V+FD LRAAVRAQAD +EEEAVV+AAI GGDVW+R QPV C S+++ DNYGGVF GF
Sbjct:  113 LYSQFGTPEYVAAEVLSGCGHGMPVDLWALGVLIYELLVGQTPFKSPSVEEMYERIATGDYAFPKPPASPACAAAEGSSSLKCLSSKVVGKSGSSLSNVHKGGVQKQAFSLKKSDSSLSATASKKGGLAMAVGPNGADHTRQQAEPAKSKQAQRQKQGMADSNNSHCGGGAQDPAAQSLVKALLCLDPSRRPSLPEVKRHPFFAGVDFDGLRAAVRAQADREEEEAVVAAAIEGGDVWVRGQPVVCQSDEINDNYGGVFVGF 374
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BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Match: A0A1Y1IJR3_KLENI (Serine/threonine protein kinase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IJR3_KLENI)

HSP 1 Score: 86.7 bits (213), Expect = 4.180e-16
Identity = 36/67 (53.73%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:   16 GTPEYVAPEVLNGCGHGLAVDLWALGVLVYELLVGQTPFKAGSVDEMYERVAAGDYAFPPPPARKSP 216
            GTP+Y+APE++NG GHG AVD WA GVL++EL+ G  PF   S  E+Y+R+  GD+ FPPP +   P
Sbjct:  467 GTPDYLAPEIVNGKGHGRAVDFWAFGVLLFELIAGVPPFFGDSQKELYKRIVEGDFRFPPPKSAADP 533
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BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Match: A0A7H8RB56_9EURO (Uncharacterized protein n=2 Tax=Talaromyces sect. Islandici TaxID=2752542 RepID=A0A7H8RB56_9EURO)

HSP 1 Score: 84.3 bits (207), Expect = 2.580e-15
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    4 FSQFGTPEYVAPEVLNGCGHGLAVDLWALGVLVYELLVGQTPFKAGSVDEMYERVAAGDYAFP 192
            ++  GTP+Y+APEV++ CGHGLAVD WALG+L+YE LVGQ PF   +V  +YE++  G   FP
Sbjct:  465 YTLCGTPDYLAPEVIHNCGHGLAVDWWALGILIYEFLVGQPPFWDQNVMRLYEQIVEGRLRFP 527
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BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Match: A0A0G4ISU8_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ISU8_PLABS)

HSP 1 Score: 84.0 bits (206), Expect = 3.260e-15
Identity = 35/60 (58.33%), Postives = 46/60 (76.67%), Query Frame = 1 
Query:   16 GTPEYVAPEVLNGCGHGLAVDLWALGVLVYELLVGQTPFKAGSVDEMYERVAAGDYAFPP 195
            GTPEY++PEV+ GCGHG AVD W+LG+L+YEL VG  PF + +V EMY+++  G   FPP
Sbjct:  362 GTPEYLSPEVIAGCGHGKAVDWWSLGILLYELTVGIPPFYSQNVHEMYQKIQTGVLRFPP 421
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BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Match: A0A1V6SZF8_9EURO (Uncharacterized protein n=1 Tax=Penicillium steckii TaxID=303698 RepID=A0A1V6SZF8_9EURO)

HSP 1 Score: 83.2 bits (204), Expect = 4.130e-15
Identity = 39/69 (56.52%), Postives = 49/69 (71.01%), Query Frame = 1 
Query:    4 FSQFGTPEYVAPEVLNGCGHGLAVDLWALGVLVYELLVGQTPFKAGSVDEMYERVAAGDYAFPP--PPA 204
            ++  GTPEY+APEV++  GHGLAVD WALG+L+YE LVGQ PF   S   +YE++  G   FPP  PPA
Sbjct:  234 YTLCGTPEYLAPEVIHNSGHGLAVDWWALGILIYEFLVGQPPFWDQSPMRIYEQIVEGRLRFPPNMPPA 302
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BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Match: A0A0C7MU05_9SACH (Serine/threonine-protein kinase n=4 Tax=Lachancea TaxID=300275 RepID=A0A0C7MU05_9SACH)

HSP 1 Score: 83.6 bits (205), Expect = 4.900e-15
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:    4 FSQFGTPEYVAPEVLNG--CGHGLAVDLWALGVLVYELLVGQTPFKAGSVDEMYERVAAGDYAFP 192
            F+  GTP Y+APEVL G   GH   VD+W+ GV++Y LLVG+ PF+A  V+ +YER+ AGDYAFP
Sbjct:  234 FTVCGTPNYIAPEVLTGKHTGHSYEVDIWSCGVMIYALLVGKPPFQAKEVNIIYERIKAGDYAFP 298
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BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Match: A0A3A2ZQM2_9EURO (Uncharacterized protein n=1 Tax=Aspergillus sclerotialis TaxID=2070753 RepID=A0A3A2ZQM2_9EURO)

HSP 1 Score: 82.0 bits (201), Expect = 5.280e-15
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    4 FSQFGTPEYVAPEVLNGCGHGLAVDLWALGVLVYELLVGQTPFKAGSVDEMYERVAAGDYAFP 192
            ++  GTPEY+APEV+   GHGLAVD WALG+L+YE LVGQ PF   S   +YE++ AG   FP
Sbjct:  147 YTLCGTPEYLAPEVIRNSGHGLAVDWWALGILIYEFLVGQPPFWDQSPIRLYEQIVAGRLRFP 209
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BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Match: A0A1S9RJK3_PENBI (cAMP-dependent protein kinase catalytic subunit alpha n=3 Tax=Penicillium TaxID=5073 RepID=A0A1S9RJK3_PENBI)

HSP 1 Score: 82.4 bits (202), Expect = 7.790e-15
Identity = 42/94 (44.68%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:    4 FSQFGTPEYVAPEVLNGCGHGLAVDLWALGVLVYELLVGQTPFKAGSVDEMYERVAAGDYAFPP--PPARKSPSA--SKSHSHKGIANVAGGAT 273
            ++  GTPEY+APEV++  GHGLAVD WALG+L+YE LVGQ PF   +   +YE++  G   FPP  PPA ++  +   K++  + + +++GG+T
Sbjct:  235 YTLCGTPEYLAPEVIHNSGHGLAVDWWALGILIYEFLVGQPPFWDQNPMRIYEQIVEGRLRFPPNMPPAAQNIVSLLCKTNPSERLGHISGGST 328
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BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Match: A0A388KKH5_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KKH5_CHABU)

HSP 1 Score: 82.8 bits (203), Expect = 1.040e-14
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    4 FSQFGTPEYVAPEVLNGCGHGLAVDLWALGVLVYELLVGQTPFKAGSVDEMYERVAAGDYAFPP 195
            F+  GTP+Y+APE++   GH  AVD WALGVL++EL +G TPF A S+ E Y ++  GD  FPP
Sbjct: 1511 FTFVGTPDYLAPEIIQNTGHDKAVDFWALGVLIFELQMGYTPFHANSLAEQYSKILTGDVRFPP 1574
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BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Match: UPI0001EFC000 (cAMP-dependent protein kinase catalytic subunit n=1 Tax=Trichinella spiralis TaxID=6334 RepID=UPI0001EFC000)

HSP 1 Score: 77.8 bits (190), Expect = 1.470e-14
Identity = 30/62 (48.39%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:    4 FSQFGTPEYVAPEVLNGCGHGLAVDLWALGVLVYELLVGQTPFKAGSVDEMYERVAAGDYAF 189
            ++  GTPEY+APE++ G G+  AVD W+LG+L+YE+L G+TPF+A +  E+Y+ +  GD+ F
Sbjct:    4 WTMCGTPEYLAPEIVTGKGYNQAVDWWSLGILIYEMLSGKTPFEAPTAIELYQNIVYGDFKF 65
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13446.2024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JFW9_9PHAE3.310e-7152.29Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A1Y1IJR3_KLENI4.180e-1653.73Serine/threonine protein kinase n=1 Tax=Klebsormid... [more]
A0A7H8RB56_9EURO2.580e-1555.56Uncharacterized protein n=2 Tax=Talaromyces sect. ... [more]
A0A0G4ISU8_PLABS3.260e-1558.33Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A1V6SZF8_9EURO4.130e-1556.52Uncharacterized protein n=1 Tax=Penicillium stecki... [more]
A0A0C7MU05_9SACH4.900e-1556.92Serine/threonine-protein kinase n=4 Tax=Lachancea ... [more]
A0A3A2ZQM2_9EURO5.280e-1557.14Uncharacterized protein n=1 Tax=Aspergillus sclero... [more]
A0A1S9RJK3_PENBI7.790e-1544.68cAMP-dependent protein kinase catalytic subunit al... [more]
A0A388KKH5_CHABU1.040e-1453.13Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
UPI0001EFC0001.470e-1448.39cAMP-dependent protein kinase catalytic subunit n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13446contigS-dermatodea_contig13446:6006..6650 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score84.0
Seed ortholog evalue9.6e-14
Seed eggNOG ortholog69781.S7ZWP5
Preferred namePKA4
KEGG koko:K04345,ko:K08282,ko:K19584
KEGG Pathwayko01522,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04970,ko04971,ko04976,ko05012,ko05020,ko05030,ko05031,ko05032,ko05110,ko05146,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05414,map01522,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04970,map04971,map04976,map05012,map05020,map05030,map05031,map05032,map05110,map05146,map05165,map05166,map05169,map05200,map05203,map05205,map05414
KEGG ModuleM00695
EggNOG free text desc.cAMP-dependent protein kinase catalytic subunit
EggNOG OGs20C35@147545,38C4N@33154,3NW1V@4751,3QKZK@4890,3S4TZ@5042,KOG0616@1,KOG0616@2759
EC2.7.11.1,2.7.11.11
COG Functional cat.T
Best tax levelEurotiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-20_000540.1
Exons1
Model size645
Cds size645
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924286.3568394-CDS-S-dermatodea_contig13446:6005..66501622924286.3568394-CDS-S-dermatodea_contig13446:6005..6650Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13446 6006..6650 -
1694079151.6473622-CDS-S-dermatodea_contig13446:6005..66501694079151.6473622-CDS-S-dermatodea_contig13446:6005..6650Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13446 6006..6650 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13446.2024.1prot_S-dermatodea_contig13446.2024.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13446 6006..6650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13446.2024.1

>prot_S-dermatodea_contig13446.2024.1 ID=prot_S-dermatodea_contig13446.2024.1|Name=mRNA_S-dermatodea_contig13446.2024.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=215bp
LFSQFGTPEYVAPEVLNGCGHGLAVDLWALGVLVYELLVGQTPFKAGSVD
EMYERVAAGDYAFPPPPARKSPSASKSHSHKGIANVAGGATGSGGGGGSR
RVSKKEALSRAKDSRPEELENGAQNPAAQALVKSLLRLAPARRPSIAEIK
AHAFFAEVNFDALRAAVRAQADADEEEAVVSAAINGGDVWLREQPVTCMS
EDVEDNYGGVFAGF*
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mRNA from alignment at S-dermatodea_contig13446:6006..6650-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13446.2024.1 ID=mRNA_S-dermatodea_contig13446.2024.1|Name=mRNA_S-dermatodea_contig13446.2024.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=645bp|location=Sequence derived from alignment at S-dermatodea_contig13446:6006..6650- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTTCTCGCAGTTCGGCACGCCGGAGTACGTCGCACCTGAGGTGCTCAA
CGGCTGCGGGCACGGCCTCGCGGTCGACCTCTGGGCCCTCGGCGTCCTGG
TCTACGAGCTCCTGGTGGGCCAGACCCCGTTCAAGGCCGGCAGCGTCGAC
GAGATGTACGAGCGCGTCGCGGCTGGGGACTACGCGTTCCCCCCGCCTCC
CGCGAGGAAATCGCCCTCGGCCTCGAAGTCGCACAGCCACAAGGGGATCG
CCAACGTCGCGGGTGGCGCCACCGGCAGCGGGGGCGGCGGAGGAAGCAGG
AGGGTTTCCAAGAAGGAGGCGTTGTCGAGGGCGAAAGATTCAAGGCCCGA
GGAATTGGAGAACGGCGCGCAGAACCCGGCGGCCCAGGCCCTCGTGAAGA
GCCTGCTGCGGCTGGCACCCGCGCGCCGTCCGAGCATCGCGGAGATCAAG
GCGCACGCGTTTTTCGCCGAGGTTAACTTTGACGCATTGCGGGCGGCGGT
GCGGGCGCAGGCGGATGCCGATGAGGAGGAGGCGGTTGTGTCCGCGGCGA
TCAACGGGGGCGACGTTTGGCTCCGCGAGCAGCCGGTGACGTGCATGTCA
GAGGACGTGGAAGACAATTACGGAGGCGTGTTCGCGGGCTTCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13446:6006..6650-

>mRNA_S-dermatodea_contig13446.2024.1 ID=mRNA_S-dermatodea_contig13446.2024.1|Name=mRNA_S-dermatodea_contig13446.2024.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1290bp|location=Sequence derived from alignment at S-dermatodea_contig13446:6006..6650- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCTTCTCGCAGTTCGGCACGCCGGAGTACGTCGCACCTGAGGTGCTCAA
CGGCTGCGGGCACGGCCTCGCGGTCGACCTCTGGGCCCTCGGCGTCCTGG
TCTACGAGCTCCTGGTGGGCCAGACCCCGTTCAAGGCCGGCAGCGTCGAC
GAGATGTACGAGCGCGTCGCGGCTGGGGACTACGCGTTCCCCCCGCCTCC
CGCGAGGAAATCGCCCTCGGCCTCGAAGTCGCACAGCCACAAGGGGATCG
CCAACGTCGCGGGTGGCGCCACCGGCAGCGGGGGCGGCGGAGGAAGCAGG
AGGGTTTCCAAGAAGGAGGCGTTGTCGAGGGCGAAAGATTCAAGGCCCGA
GGAATTGGAGAACGGCGCGCAGAACCCGGCGGCCCAGGCCCTCGTGAAGA
GCCTGCTGCGGCTGGCACCCGCGCGCCGTCCGAGCATCGCGGAGATCAAG
GCGCACGCGTTTTTCGCCGAGGTTAACTTTGACGCATTGCGGGCGGCGGT
GCGGGCGCAGGCGGATGCCGATGAGGAGGAGGCGGTTGTGTCCGCGGCGA
TCAACGGGGGCGACGTTTGGCTCCGCGAGCAGCCGGTGACGTGCATGTCA
GAGGACGTGGAAGACAATTACGGAGGCGTGTTCGCGGGCTTCTGACTCTT
CTCGCAGTTCGGCACGCCGGAGTACGTCGCACCTGAGGTGCTCAACGGCT
GCGGGCACGGCCTCGCGGTCGACCTCTGGGCCCTCGGCGTCCTGGTCTAC
GAGCTCCTGGTGGGCCAGACCCCGTTCAAGGCCGGCAGCGTCGACGAGAT
GTACGAGCGCGTCGCGGCTGGGGACTACGCGTTCCCCCCGCCTCCCGCGA
GGAAATCGCCCTCGGCCTCGAAGTCGCACAGCCACAAGGGGATCGCCAAC
GTCGCGGGTGGCGCCACCGGCAGCGGGGGCGGCGGAGGAAGCAGGAGGGT
TTCCAAGAAGGAGGCGTTGTCGAGGGCGAAAGATTCAAGGCCCGAGGAAT
TGGAGAACGGCGCGCAGAACCCGGCGGCCCAGGCCCTCGTGAAGAGCCTG
CTGCGGCTGGCACCCGCGCGCCGTCCGAGCATCGCGGAGATCAAGGCGCA
CGCGTTTTTCGCCGAGGTTAACTTTGACGCATTGCGGGCGGCGGTGCGGG
CGCAGGCGGATGCCGATGAGGAGGAGGCGGTTGTGTCCGCGGCGATCAAC
GGGGGCGACGTTTGGCTCCGCGAGCAGCCGGTGACGTGCATGTCAGAGGA
CGTGGAAGACAATTACGGAGGCGTGTTCGCGGGCTTCTGA
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