mRNA_S-dermatodea_contig13431.2016.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13431.2016.1
Unique NamemRNA_S-dermatodea_contig13431.2016.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Match: D8LJB4_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJB4_ECTSI)

HSP 1 Score: 486 bits (1252), Expect = 1.070e-165
Identity = 243/325 (74.77%), Postives = 275/325 (84.62%), Query Frame = 1 
Query:    1 SSSFFGDPSGKEQQDQTPG----GVNANSDRNPPGGAPDDGDEGWPALQRVTGLYSALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMTDVTPLRNVLRSLSTFVPDVGYVQGMNFVCRCLLQVYDDEEEAFWVLVGMLQRFGLRRLYSPGMPLLRLRFYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVKVMWDRIFLHANSPASQWAPIFLFVLELLRRAADTLKKESRFSELIHRLVNMPFRELCEGRGACSMIAEAGRRFETSSPMPVQLLLLNDMWTQGGGENGDFS-ENGQENQLL 960
            S SFFG  SGKE++D  PG    G   NS+ +   G  ++G+     ++RV GLYSALL SADAMDAND+TGVRGPKQSCFVDIEKDL+RTLGMTDV+PLRNVLR  STFVPDVGYVQGMNFVCR +LQV+ DEEEAFWV VGMLQRF LR LY PGMPLLRLRF+QLNRLLMWHLP+L++HFEACGVQTNL+ATSWFVTLLSDGGMLPD EVKV+WD IFLH++SPASQWAP+FLF+LELLRRA+  LK+ESRFSELI RLVNMPFRELC G GACS I E  RRFETSSPMPVQLLLLND WT+GGGE+G+ S ++  + QLL
Sbjct:  374 SESFFGKNSGKEEEDTPPGDDAAGAVVNSEGDQKNGKENEGEA---LIERVPGLYSALLMSADAMDANDMTGVRGPKQSCFVDIEKDLQRTLGMTDVSPLRNVLRCTSTFVPDVGYVQGMNFVCRSVLQVFQDEEEAFWVFVGMLQRFRLRELYCPGMPLLRLRFFQLNRLLMWHLPELYDHFEACGVQTNLYATSWFVTLLSDGGMLPDSEVKVVWDHIFLHSSSPASQWAPMFLFLLELLRRASPALKEESRFSELIQRLVNMPFRELCRGSGACSTIEEGRRRFETSSPMPVQLLLLNDQWTEGGGEDGELSPKHDGDKQLL 695
[Close]
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Match: A0A6H5JIN0_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN0_9PHAE)

HSP 1 Score: 488 bits (1256), Expect = 2.030e-163
Identity = 243/321 (75.70%), Postives = 272/321 (84.74%), Query Frame = 1 
Query:    1 SSSFFGDPSGKEQQDQTPGGVNANSDRNPPGGAPDDGDEGWPALQRVTGLYSALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMTDVTPLRNVLRSLSTFVPDVGYVQGMNFVCRCLLQVYDDEEEAFWVLVGMLQRFGLRRLYSPGMPLLRLRFYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVKVMWDRIFLHANSPASQWAPIFLFVLELLRRAADTLKKESRFSELIHRLVNMPFRELCEGRGACSMIAEAGRRFETSSPMPVQLLLLNDMWTQGGGENGDFS-ENGQENQLL 960
            S SFFG  SGKE++D  PG   A +  N  G      +EG   ++RV GLYSALL SADAMDANDITGVRGPKQSCFVDIEKDL+RTLGMTDV+PLRNVLR  STFVPDVGYVQGMNFVCR +LQV+ DEEEAFWV VGMLQRF LR LY PGMPLLRLRF+QLNRLLMWHLP+L++HFEACGVQTNL+ATSWFVTLLSDGGMLPD EVKV+WD IFLH++SPASQWAP+FLF+LELLRRA+  LK+ESRFSELI RLVNMPFRELC G GACS I E  RRFETSSPMPVQLLLL+D WT+GGGE+G+ S ++  + QLL
Sbjct:  605 SESFFGKNSGKEEEDTPPGDDAAGAVVNSEGHQNGKANEGEALIERVPGLYSALLMSADAMDANDITGVRGPKQSCFVDIEKDLQRTLGMTDVSPLRNVLRCTSTFVPDVGYVQGMNFVCRSVLQVFQDEEEAFWVFVGMLQRFRLRELYCPGMPLLRLRFFQLNRLLMWHLPELYDHFEACGVQTNLYATSWFVTLLSDGGMLPDSEVKVVWDHIFLHSSSPASQWAPMFLFLLELLRRASPALKEESRFSELIQRLVNMPFRELCRGSGACSTIEEGRRRFETSSPMPVQLLLLHDQWTEGGGEDGELSPKHDGDKQLL 925
[Close]
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Match: A0A835ZLD6_9STRA (Rab-GTPase-TBC domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZLD6_9STRA)

HSP 1 Score: 266 bits (679), Expect = 9.970e-82
Identity = 131/260 (50.38%), Postives = 172/260 (66.15%), Query Frame = 1 
Query:  130 LQRVTGLYSALLNSADAMDANDITGVRGPKQSCFVDIEKDLKRTLGMTDVTPLRNVLRSLSTFVPD-VGYVQGMNFVCRCLLQVY-DDEEEAFWVLVGMLQRFGLRRLYSPGMPLLRLRFYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVKVMWDRIFLHANSPASQWAPIFLFVLELLRRAADTLKKESRFSELIHRLVNMPFRELC-EGRGACSMIAEAGRRFETSSPMPVQLLLLNDMW 900
            ++RV GLY AL  SA A  A D+ G RG    C  DIEKD+ RT    +   LR VL SLS F+P  +GYVQG N V R LL V  +D+E+ FW  VGM+ +F L  LY+PGMP LRLRF+QLNRL++WHLP LH HF  C V  +L+AT WF+TLL+DG MLP+ + +V+WDRIF+   +PA QW+ I+  +LELLRRA   L   +RF +LI  L ++P ++L   G GA +++  A   FE S P+P QLL++ D W
Sbjct:  232 VERVPGLYEALFASAQATSAADMAGGRGAMSQCVTDIEKDISRTANFENRMALRGVLYSLSAFLPGGIGYVQGQNLVARFLLIVMREDQEDTFWAWVGMMHQFDLLGLYTPGMPRLRLRFFQLNRLVLWHLPRLHAHFATCDVAADLYATPWFITLLADGSMLPEQQTRVIWDRIFMQCGAPAEQWSCIYGVLLELLRRAEPMLLGLARFDDLIQMLTHLPIKDLLFPGEGAVALLERAASAFEASVPLPCQLLMIEDEW 491
[Close]
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Match: A0A7S4DB79_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DB79_HETAK)

HSP 1 Score: 122 bits (307), Expect = 3.860e-30
Identity = 66/177 (37.29%), Postives = 95/177 (53.67%), Query Frame = 1 
Query:  391 EEAFWVLVGMLQRFGLRRLYSPGMPLLRLRFYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVKVMWDRIFLH--ANSPASQWAPIFLFVLELLRRAADTLKK--ESRFSELIHRLVNMPFRELC-EGRGACSMIAEAGRRFETSSPMPVQLLLLNDMWTQ 906
            E++FW L  +L    +  LY  GMP L LRF+QL RL  WHLP+L +   +  +  NL+AT WFVTLL+D  + P+ EV  +WD  F+   A  P ++WA  F  +L  LR     L +     F   +  L  +PFR++C + RG   + A+A   +E  + M  QL LL   W +
Sbjct:   18 EDSFWALSALLSPTDMTGLYREGMPGLHLRFFQLERLQQWHLPELADRLRSLQIPANLYATGWFVTLLTDASLFPEPEVTKLWDAFFIRWAAGGPRARWALHFRALLGALRALWPRLARLPAGDFDAALALLHRVPFRDICKDSRGVLGLAADAFELYERETKMEDQLALLELEWVR 194
[Close]
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Match: A0A7S2PZU8_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2PZU8_9DINO)

HSP 1 Score: 111 bits (277), Expect = 2.600e-25
Identity = 76/204 (37.25%), Postives = 105/204 (51.47%), Query Frame = 1 
Query:  208 RGPKQSCFVDIEKDLKRTLGM----TDVT-----PLRNVLRSLSTFVPDVGYVQGMNFVCRCLLQVYDDEEEAFWVLVGMLQRFGLRRLYSPGMPLLRLRFYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVKVMWDRIFLHANSPASQWAPIFLFVLELLRRAADTLKKESRFSELIHRLVNMPFR 792
            R  +  C  +I KD+ RT        D T      L NVLR+ S F P+VGY QGM F+C  LL +Y  EE+AF +L+ +L  + + +L+ PG+PLL   F+QL RLL  H+P L  H    GV+  ++A+ WF+T+       P   V  +WD IFL     A     IF   L LL    + L  ES F +++  L   P R
Sbjct:   13 RTEEAPCEAEIVKDINRTFPKHVLYRDKTGLGQQQLLNVLRAYSVFNPEVGYCQGMGFICGVLL-MYMCEEDAFLMLISLLDNYRMSKLFMPGLPLLNKYFFQLQRLLAMHMPSLCNHLAQQGVEPTMYASKWFMTVCIYN--FPFSTVVRIWD-IFL-----AEGVKIIFRIALALLMMNQEALLNES-FEQILETLKQAPSR 206
[Close]
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Match: A0A0G4H9N1_9ALVE (Rab-GAP TBC domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H9N1_9ALVE)

HSP 1 Score: 115 bits (287), Expect = 1.050e-24
Identity = 68/166 (40.96%), Postives = 100/166 (60.24%), Query Frame = 1 
Query:  286 LRNVLRSLSTFVPDVGYVQGMNFVCRCLLQVYDDEEEAFWVLVGMLQRFGLRRLYSPGMPLLRLRFYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVKVMWDRIFLHANSPASQWAPIFLFVLELLRRAADTLKKESRFSELIHRLVNM 783
            L NV+R+ S F P+VGY QGM FV   LL ++  EE+AFW++V +L+++ +  L+ PG+PLL   FYQL  LL  HLP LH H +   VQ ++FA+ WF+TL +    L    V  +WD +FL     AS W  IF   L +++   ++L  ES F +++  L N+
Sbjct:  239 LFNVVRAYSLFNPEVGYCQGMGFVAGFLL-MFMQEEDAFWMIVALLEKYEMSGLFKPGLPLLDKLFYQLECLLEVHLPHLHHHLQRQNVQPSMFASEWFMTLFTANFGLET--VARIWD-VFL-----ASGWKIIFCVALAIMQLLEESLLGES-FEQILLGLKNV 394
[Close]
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Match: A0A1B0AYA2_9MUSC (Rab-GAP TBC domain-containing protein n=7 Tax=Glossina TaxID=7393 RepID=A0A1B0AYA2_9MUSC)

HSP 1 Score: 113 bits (283), Expect = 4.240e-24
Identity = 76/232 (32.76%), Postives = 117/232 (50.43%), Query Frame = 1 
Query:  148 LYSALLNSADAMDANDITGVRGPKQS-CFVDIEKDLKRTL---------GMTDVTPLRNVLRSLSTFVPDVGYVQGMNFVCRCLLQVYDDEEEAFWVLVGMLQRFGLRRLYSPGMPLLRLRFYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVKVMWDRIFLHANSPASQWAPIFLFVLELLRRAAD----------TLKKESRFSELIHRLVNM 783
            ++  L +     + ND+  +   K++ C   I++D+ RT          G +    L  V ++ + +  +VGY QG++F+   LL ++  EE+AF VLV ++  +GLR LY  G  +L LR YQL RL+  HLP LHEHF ACG++T+++A+ WF+TL +     P C V  + D   L       Q A   L + E   R  D          TL K+ R S    R++ M
Sbjct:  665 IWQKLASIESKTEMNDMYKILITKETKCETVIQRDIHRTFPAHKCFKESGGSGQDSLFKVSKAYAVYDKEVGYCQGLSFIAASLL-LHMPEEDAFCVLVSLMYDYGLRDLYKQGFEVLYLRLYQLERLIKDHLPKLHEHFVACGIETHMYASQWFLTLFT--ARFPLCFVFHVLDVFLLDGLPLLFQVAITLLSICENDLRQLDFEGILKYFRVTLPKKCRSSSQARRIMKM 893
[Close]
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Match: A0A813HJZ4_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HJZ4_POLGL)

HSP 1 Score: 107 bits (267), Expect = 3.760e-23
Identity = 72/199 (36.18%), Postives = 103/199 (51.76%), Query Frame = 1 
Query:  226 CFVDIEKDLKRT------------LGMTDVTPLRNVLRSLSTFVPDVGYVQGMNFVCRCLLQVYDDEEEAFWVLVGMLQRFGLRRLYSPGMPLLRLRFYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVKVMWDRIFLHANSPASQWAPIFLFVLELLRRAADTLKKESRFSELIHRLVNMP 786
            C  DI +D+ RT            LG      L NVLR+ S F P+VGY QGM F+C  LL +Y  E++AF +L+ +L+ + +  L+ P +PLL   F+QL RLL  H+P L+ H    GV+  ++A+ WF+T+       P   V  +WD IFL     A     IF   L LL+   + L  ES F +++  L   P
Sbjct:  104 CEGDIVRDINRTFPKHVLFRDKQGLGQQQ---LLNVLRAYSVFNPEVGYCQGMGFICGVLL-MYMCEDDAFLMLISLLENYRMAGLFMPNLPLLNKYFFQLQRLLEMHMPQLYNHLAEQGVEPTMYASQWFMTVCIYN--FPFATVVRVWD-IFL-----AEGVKIIFRIALALLKLNQEALLNES-FEQILQTLKQAP 289
[Close]
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Match: A0A484BZI3_DRONA (Rab-GAP TBC domain-containing protein n=7 Tax=repleta group TaxID=32321 RepID=A0A484BZI3_DRONA)

HSP 1 Score: 110 bits (275), Expect = 4.760e-23
Identity = 76/239 (31.80%), Postives = 119/239 (49.79%), Query Frame = 1 
Query:  148 LYSALLNSADAMDANDITGVRGPKQS-CFVDIEKDLKRTL---------GMTDVTPLRNVLRSLSTFVPDVGYVQGMNFVCRCLLQVYDDEEEAFWVLVGMLQRFGLRRLYSPGMPLLRLRFYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVKVMWDRIFLHANSPASQWAPIFLFVLELLRRAAD----------TLKKESRFSELIHRLVNMPFRELCE 804
            ++  L N    ++ ND+  +   K++ C   I++D+ RT          G +    L  V ++ +    +VGY QG++F+   LL ++  EE+AF VLV ++  +GLR LY  G  +L LR YQL RL+   LP LHEHF ACG++T+++A+ WF+TL +     P C V  + D   L       Q A   L + E   R  D          TL K+ R S    +++    ++ CE
Sbjct:  684 IWQKLANVEGKVEMNDMYKILITKETKCETVIQRDIHRTFPAHKCFKETGGSGQDALFKVSKAYAVHDSEVGYCQGLSFIAASLL-IHMPEEDAFCVLVALMYDYGLRDLYKAGFEVLYLRLYQLERLIKDQLPKLHEHFTACGIETHMYASQWFLTLYT--ARFPLCFVFHVLDVFLLDGLPVLFQVAVTLLSICESDLRQLDFEGILKYFRVTLPKKCRSSSQARKIM----KQACE 915
[Close]
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Match: Q9VSI2_DROME (GTPase activating protein and centrosome-associated, isoform A n=23 Tax=melanogaster group TaxID=32346 RepID=Q9VSI2_DROME)

HSP 1 Score: 110 bits (274), Expect = 6.090e-23
Identity = 70/204 (34.31%), Postives = 106/204 (51.96%), Query Frame = 1 
Query:  148 LYSALLNSADAMDANDITGVRGPKQS-CFVDIEKDLKRT---------LGMTDVTPLRNVLRSLSTFVPDVGYVQGMNFVCRCLLQVYDDEEEAFWVLVGMLQRFGLRRLYSPGMPLLRLRFYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVKVMWDRIFLHANSPASQWAPIFLFVLELLRRAAD 729
            ++  L N    M+ ND   +   K++ C   I++D+ RT         +G +    L  V ++ +    +VGY QG++F+   LL ++  EE+AF VLV ++  +GLR LY  G  +L LR YQL RL+   LP LHEHF ACG++T+++A+ WF+TL +     P C V  + D   L       Q A   L + E   R  D
Sbjct:  526 IWQKLANVEGRMEMNDKYKILITKETKCETVIQRDIHRTFPAHKCFKEIGGSGQDALFKVSKAYAVHDSEVGYCQGLSFIAASLL-LHMPEEDAFCVLVALMYDYGLRDLYKAGFEVLYLRLYQLERLIKDQLPKLHEHFTACGIETHMYASQWFLTLYT--ARFPLCFVFHVLDVFLLDGLPVLFQVAVTLLSICESDLRQLD 726
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13431.2016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJB4_ECTSI1.070e-16574.77Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JIN0_9PHAE2.030e-16375.70Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZLD6_9STRA9.970e-8250.38Rab-GTPase-TBC domain-containing protein n=1 Tax=T... [more]
A0A7S4DB79_HETAK3.860e-3037.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2PZU8_9DINO2.600e-2537.25Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]
A0A0G4H9N1_9ALVE1.050e-2440.96Rab-GAP TBC domain-containing protein n=1 Tax=Chro... [more]
A0A1B0AYA2_9MUSC4.240e-2432.76Rab-GAP TBC domain-containing protein n=7 Tax=Glos... [more]
A0A813HJZ4_POLGL3.760e-2336.18Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A484BZI3_DRONA4.760e-2331.80Rab-GAP TBC domain-containing protein n=7 Tax=repl... [more]
Q9VSI2_DROME6.090e-2334.31GTPase activating protein and centrosome-associate... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13431contigS-dermatodea_contig13431:122..6569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score451.1
Seed ortholog evalue3.6e-124
Seed eggNOG ortholog2880.D8LJB4
Preferred nameFASTKD3
KEGG koko:K19944
EggNOG free text desc.regulation of vesicle fusion
EggNOG OGsCOG5210@1,KOG1102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-02_005450.1
Exons7
Model size977
Cds size783
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.7352417-UTR-S-dermatodea_contig13431:121..1351622924285.7352417-UTR-S-dermatodea_contig13431:121..135Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13431 122..135 -
1694079151.2164302-UTR-S-dermatodea_contig13431:121..1351694079151.2164302-UTR-S-dermatodea_contig13431:121..135Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13431 122..135 -
1622924285.8148227-UTR-S-dermatodea_contig13431:5768..58291622924285.8148227-UTR-S-dermatodea_contig13431:5768..5829Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13431 5769..5829 -
1694079151.303389-UTR-S-dermatodea_contig13431:5768..58291694079151.303389-UTR-S-dermatodea_contig13431:5768..5829Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13431 5769..5829 -
1622924285.8252423-UTR-S-dermatodea_contig13431:6450..65691622924285.8252423-UTR-S-dermatodea_contig13431:6450..6569Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13431 6451..6569 -
1694079151.3115654-UTR-S-dermatodea_contig13431:6450..65691694079151.3115654-UTR-S-dermatodea_contig13431:6450..6569Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13431 6451..6569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.7461934-CDS-S-dermatodea_contig13431:135..2561622924285.7461934-CDS-S-dermatodea_contig13431:135..256Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 136..256 -
1694079151.2339833-CDS-S-dermatodea_contig13431:135..2561694079151.2339833-CDS-S-dermatodea_contig13431:135..256Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 136..256 -
1622924285.7580266-CDS-S-dermatodea_contig13431:1166..13841622924285.7580266-CDS-S-dermatodea_contig13431:1166..1384Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 1167..1384 -
1694079151.244024-CDS-S-dermatodea_contig13431:1166..13841694079151.244024-CDS-S-dermatodea_contig13431:1166..1384Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 1167..1384 -
1622924285.7686138-CDS-S-dermatodea_contig13431:2600..27451622924285.7686138-CDS-S-dermatodea_contig13431:2600..2745Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 2601..2745 -
1694079151.261545-CDS-S-dermatodea_contig13431:2600..27451694079151.261545-CDS-S-dermatodea_contig13431:2600..2745Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 2601..2745 -
1622924285.777163-CDS-S-dermatodea_contig13431:3505..36421622924285.777163-CDS-S-dermatodea_contig13431:3505..3642Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 3506..3642 -
1694079151.2777054-CDS-S-dermatodea_contig13431:3505..36421694079151.2777054-CDS-S-dermatodea_contig13431:3505..3642Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 3506..3642 -
1622924285.7866435-CDS-S-dermatodea_contig13431:4951..50471622924285.7866435-CDS-S-dermatodea_contig13431:4951..5047Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 4952..5047 -
1694079151.287316-CDS-S-dermatodea_contig13431:4951..50471694079151.287316-CDS-S-dermatodea_contig13431:4951..5047Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 4952..5047 -
1622924285.797667-CDS-S-dermatodea_contig13431:5702..57681622924285.797667-CDS-S-dermatodea_contig13431:5702..5768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 5703..5768 -
1694079151.2954032-CDS-S-dermatodea_contig13431:5702..57681694079151.2954032-CDS-S-dermatodea_contig13431:5702..5768Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13431 5703..5768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13431.2016.1prot_S-dermatodea_contig13431.2016.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13431 136..5768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13431.2016.1

>prot_S-dermatodea_contig13431.2016.1 ID=prot_S-dermatodea_contig13431.2016.1|Name=mRNA_S-dermatodea_contig13431.2016.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=261bp
MDANDITGVRGPKQSCFVDIEKDLKRTLGMTDVTPLRNVLRSLSTFVPDV
GYVQGMNFVCRCLLQVYDDEEEAFWVLVGMLQRFGLRRLYSPGMPLLRLR
FYQLNRLLMWHLPDLHEHFEACGVQTNLFATSWFVTLLSDGGMLPDCEVK
VMWDRIFLHANSPASQWAPIFLFVLELLRRAADTLKKESRFSELIHRLVN
MPFRELCEGRGACSMIAEAGRRFETSSPMPVQLLLLNDMWTQGGGENGDF
SENGQENQLL*
back to top

mRNA from alignment at S-dermatodea_contig13431:122..6569-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13431.2016.1 ID=mRNA_S-dermatodea_contig13431.2016.1|Name=mRNA_S-dermatodea_contig13431.2016.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=6448bp|location=Sequence derived from alignment at S-dermatodea_contig13431:122..6569- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTTCCAGCTTCTTCGGCGACCCCTCGGGGAAAGAGCAGCAGGACCAAAC
CCCGGGTGGCGTCAACGCCAACAGCGATCGAAACCCTCCTGGTGGAGCGC
CTGACGACGGGGACGAAGGGTGTGTTTTCGTGGGTCTTAGTGGCAGGAGT
GGGTGGGTGGGTGGTTGGGTTTGGAAGGAACTTTGCTGGCGTTTTCAACC
CGTCATATGTACGAGCAGCGAGTGCTTGAAGGCGTGCGGAGTTTGGCTTG
TATAAGGCCACCCTCGGCGGAAATCCATCAGTGCTTGAATTGATTCGTTG
CGTAGGGAAAGTACAAGTTTAGTTATCTGTATATAACCAGGGAGAGATGG
GATAATCGCTTCTGACCACAGGCGGACCTCGGAAAATGCTGGTCAATCGT
ATTTATATTAATATTAGTATGTGTGCAAAAATGAAAAGAAAAAAAGAGCG
TAAATAATTACGCTCAACGGAGAACATGTCTCACTCACGGCCTCGCCCCC
TTACAAAACGCGTTTTCCATCACACTTGGAACTTGGAATTTGGAATTACT
CATCTTTTTATTCATATCGTAATCTACCAGTAATGGCTCGGGGATGTGCA
TACAAGTATGTGTCTCTTGGGTACATATGTCAATTGTCACGCTCCATCTA
CCACCCAACAGCCGTTCATTTTGGCTGTTCTCGCGCTTGTCCTGGCGGCC
CCCATGTCTCCCCTCGCGGCACGAAACTTGATCGGAGCAGGTGGCCCGCC
CTCCAGCGCGTGACGGGGTTGTACTCGGCGCTACTCAACAGCGCGGACGC
GATGGATGCGAACGATATCACGGGGGTGCGAGGACCGAAGCAGAGCTGCT
TTGTCGACATCGAAAAGGTATATTACTGAGCAGGGTACAGCCGCAAATCC
ATGCTGTAACCGCACGATATCACAATCCAGATACTGTGTGTGTGTGCTTG
TGTGTGCTTGTGTGTGTGTGCGTGTGTGTGTGTGTGTGTATGCACGAAGG
AAGAACAACGTTTCGCTTGCTTCGAACGGCTCCTATGTGACTGGCGTAAT
ATTACGGAGGTGCTGTAGACAGTAATCAGGACCAAACCTCAAGACCATAA
ATAAGCGAGAGTTCCTTTTAATACCATTAATACCATGAATACCCAAACAA
CACCAAAACTCGCGAACAAAAAGCAACACGAGGCCTGGCCTACACGGCAA
ACACCGACCGTGAATACCCAATCGTTCCAGCCTATTTGGTTTTGCTAAGT
TAACATTTGCGACGAATTTGGACCCGTTAACTATGGTTCTCCGTAATAGC
TTGAGCTCGTAAAGCCAGCCACCGTAGAACTCGCGCGAGCGCGCCCTCCA
AGCACATCTCTATATCGAACACCGCCCCAACCGCCCGCAATGGGCCTCAC
GCACCCGCACCCGTTGGGCGTGTCATCCCACTGCAGCGGCTTCCCACCAC
TATTAATAGGGTGAATGCAAATTTGATCGGGTGCCGCGTGTGTTGCTGTA
ACTCGTTTTGTTGTTGTTGCAGGATCTGAAGCGGACCCTCGGTATGACGG
ATGTGACGCCCCTGAGGAACGTCCTGAGGTCTCTGTCGACGTTTGTGCCA
GACGTGGGCTACGTTCAGGTACGTGTCGGAGGATTGTTCCTGCAGGGAGG
GGAGCGGGAGGGAACCTTGTTTTCAAGGGTGAGGGTATACTGTAGGTAAG
CTTGCACGCGTTACGAGGATGTGTGCATCATAGCTCTGAGTCCGAGCGCG
TGCGTTATTTGTTTCTTCTTACGTACGTACAGGTAATTCCGTAGTTTTTT
TTTTTCGATTCCTCGATTTATCATGTCACCACGAGCGGGATTGATACCCA
CTGGTGGGCCTGGCCGATCGACTGTACGTGTGTGATAAGCCAATCGAAAC
CAATCAATCAATCGCGGGTGTCCAATGGAACATGAGCAACAGCTGGCCAG
CAGGCATAAACCCAACGGCAATGTGTCCCTGAGACCATGGAGGACAACCA
AGAAATGAGAGAAACCGCGCTCATGATAAATAAAAATAAATAAATAAATA
AAAAATACGGTTGTTTTGGCCGGGACTCATGTACAGCCTCCTTTCGCTCC
CCCCCCCCCCACGAAGACGGTGTCATTGTTATCGTCAACAGACGGTCGCT
CGAACACAGCTCCAAGCCTGCGCGATTTGCAGAGTTGCAATCGAAAATCG
AACGATTTTCTCTCTCTCCTGCGCCTGATCCCCGTATCCAGGCCGGGCGA
GGCAGGGGGCGTCCGCCTAGGCTTTCCCCGCACGGCGTTGATTTTTGTCC
GGCTTACCGTACAGCATTAATAGTCGAAAAGCGCCAACCTGTTTGAAGCT
TGTTGCTTCGATCGTTCCACCAGCCAAGGAAAAAGGACGAAGGAAAAACC
GAACCAGGCACGCTATCATTAATCAAGCGATCGATTAATCGATTACATGG
TGGGGAGTCCCCCCCCCCCCCTACGTGCTGAATGCGCGATTGTTGGAAAT
CCCTGGAGCAAACGGTTGACTTATGATTGGTGGTACTCCGCGAGGAGAAC
TCGTGAACATATTACAGTTTTGAGCGTGTCACGCATACACCGTCGCGTGT
GTTGCGTGCGTACGGCGCTCTTGCGTTGGCACGGTGATCCAAAGTCCCTT
TGAGGTACTTGGAGTATAGTCACGCCTACTGATTGTGCAACATGCGGTTG
CCGGGTATGTCCAATCAACCCTCGGCATCTTCCGTTTGGCGCGCAAACGC
AAGGATGACGACTATTAATAGCATCTGGTACATCCTTGTGAAACGCAGCC
TGGCGGGCAAAAAAACTGGCAGATCGCTCCATCCCGGCATTGTTGGGATG
CGTGGTCTATGTCCGTATGAATACGACATATGCTAAACTTGACCCCCCCC
CCCGTGCGCTCGCGGTGCCTTGGACAGGGAATGAACTTCGTGTGCCGGTG
CCTGCTGCAAGTATACGACGATGAAGAAGAGGCGTTTTGGGTGTTGGTTG
GCATGCTGCAGCGGTTCGGCCTGAGACGACTTTACAGCCCAGGCATGCCG
CTCCTTCGCCTCAGGTGAGGCATGTGAAGGAAATACTTTTTGTTTTGTTT
TCATGTATGCAGTACTTGTAGCTCTTCTAAAGGTCGTAAGGTTTACCGTT
TTTTACTTGTCTTGAGAACAATCGTATTGTGATATAAAGTAAGCATTAAC
TGCAAAAAATTCACTTATACTATACTGTATACAAAAATATACTTCGAAGT
AGTCATATTTTCAAGTTTAAATTATATTTGCTAGGTTGGTTTTGCATATA
CATATATTTGGAAAGGCCGGCCGCCCCGGGAACGAATCATCACGATTTTT
AGTTTTTTTTTCTGCTATGATACGCATACTGATACAGTACTTGTCACTTG
ATTTCAAGAGCAGCGCGAGAATACGTTCGTTGGATTTTCGACCTTGTTTC
AGAAGTGGCAGCAAGTTGATTTCCCCGAAACTCTATTGCCTTGATAAAAC
TTATCAAGGCCATGATACCGTCAGGCAGGAGCTGATGTCCTGAACTGTGC
AACCCAACCCAACCCAACCCAACCCAACCCCATCTCAAAACGAGAACGCA
CGGAGGCCGACACTATTGTTGAACGGCCCATTGTAGTGGGTGATGAGGCA
GGTCGGTACGCTTCGATGGTGCAAAGTTGCTTCGCGACAAGAGTTTTTGC
CACTGTTCTTTGTTTGGGAAGCATTCCCGGCGCGTCGTTTATCGTCCTTT
CTGCTTTAGTCGAAAACGGAAGACTCACGTGTCTGGACATCTCATTGTTG
GGGGCGCCGCGTTACGTAAAACAGGTTCTACCAGCTGAATCGGCTGCTGA
TGTGGCACCTGCCGGATCTGCACGAGCACTTCGAGGCGTGCGGAGTGCAG
ACGAACCTGTTCGCGACGAGCTGGTTCGTGACGCTGCTTTCCGACGGCGG
CATGCTTCCGGACTGCGAGGTGAATGAGCGCCGGTCGCCGAACTTCGTGC
CGCGCCACAGTACTAGGACGAGGACGAACACGAGTATTTGGTGTCGAGTG
CTAGCCTGAGCTCAAGTAGTACACAACGCAGACTGACTGATTTGATGCTG
CTACATACGCCCTCTCGGGTCAATGCACTCGTATCACTCTCCGGACTGTT
CTTGGAGAGTTTCTCCGAACGATCCTCTGAAGATAAACAACCAAATGGTC
GATACTCTCGCTCGCATAAAATCCAGATTCCAGTTCTAGAATCCTCTCTA
TGTTCATTTTGTTTTTGTAAGAAATTCCTCGTGCTTCTTGCCAGCGTGTA
CATACATGTGATTGTATGATACGCTTCCTGGATTTACACCGACGGCTCGA
AAATCAACTCCGTAAATTTGCCAAAAGCAGCTGACGCTCAAGACTGACGC
ACATGATGACACGCGGTTGGACGTGTCACTGCATGGCTAGCGTATTATAG
GGTGTTATAGGATATTATAGGATAGGGTAGGATAGGATAGGATAGGATAG
GATAGGACAGGATAGGATATGAAAGGAAAGGAAAGGAGGGATAATTTACA
ATCGTCACCGATCAAGGCAACCTTACGCGTGCTAGAACCTCTGTACCCCC
CCCCCCCTCTCCACGAGGCCCACTGAATGTGCAACCAGTTGATTACCCGG
TATGTCCAATCAAGCCATAGATATCAATCAAGCCATAGAAATCAATCAAG
CCATAGATATCGGTTGGCGTCGCAAACGGAAGGGTATGGCTAGCAGCTGG
CATCATCCTTGCGAAACGCAGCCTGGCCAGCGAAAACCCAGCATATCGCT
CTGGATTGGCATTGTTGGGACGCGTGATCTATTGCCCGTCTGGACACGAC
ACGCGTTTAACATAAATGCCTGCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCTTCCCCCCCTCCGCCCCCAACAAACTAACATATTTTTT
CCCTCTCTAGACAAAGTTCTTGTGTGCATTATCTTTCTTTNNNNNNNNNN
TGGGCCAGGAAAACCCAGCAATTCGCCTTGGGTTGGGATTGTTGGGACCC
GGGATTTATTGCCCCGCTGGGCCCCACACCCGTTTAAAAAAAAAGCCTGC
CCCCCCCCCCCCCCCCCCCACCCCTCCCCCATCCGCATTTCGACCTTGAT
GGCAAAACAATTGCAACGTTTTCTTCACTCGTCAGGTAAAGGTTATGTGG
GACCGCATTTTCTTGCACGCCAACAGCCCGGCGTCTCAGTGGGCGCCCAT
CTTCCTGTTCGTGCTGGAGCTGCTGCGAAGGGCGGCTGACACCCTGAAGA
AGGAGAGTCGTTTCAGCGAGCTCATCCACCGCCTGGTCAACATGCCTTTC
CGCGAGCTGTGCGAGGGCCGCGGCGCTTGCAGCATGATCGCCGAAGCCGG
CAGGTGAGATCGTTCGCTCTCGCGCGGATTATATCTCCCGCCTTTACGCT
TTCGCTTGCGTGTGTATGGGTATCTTTCAGGGTTTAACACACGTAGAACA
GACAGGTCCTATGTACGTCAGGCCTGTCAAAATGCAGGTCAGTTCAATCC
ATTGACCTGTATGACGGGTTTGACCTGTAGGTTGTTTCCTGAGACTGATG
AGTATGACCTACATCCCGTGCTCATTTCCCCGTTTTTTGGGCTGATCGGT
GTGATCTGTTAGATATAGATAGCGCTCGACCTGGTCTGTGTTATGTGCGT
AAGGTCTGTCTGCAACTACTGTGACTCATCCCAGGGCGTTGGCCCCGCCT
GATGTCATCCTCCTTCGTGTGCTTCGTTGAAGATTCGAGCACCAACAAAC
AACAAACGCCCTGCTAGTACGAGATCGCGGACTGAAACGAGTGTTGTGAA
TGAAGCGGTATTATCGAGGGATGGACCCTCTGTTTTCGAGAGTTATTCTA
CTTGTGTCTTTATCTATCCCTTCTTCTCATGTATTAGTAGTTTAAACACG
TAGTTTCTTAGGGGTTTTTCCATCAGATCTCTCGATTTCTCAATCTGACC
ACGAGCGGGATCGGCAACCATTGGTGGGCCGGTCGGTTGTAAAGTGTGAA
AGTCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATCAATGGA
TCGATTATCCCGGTCGCTTGTCAAGCCCTGTTACAACCGTAAGACGTTGT
TAGATGGGCCTGGTGCTTGGGTCGACCGATCGTGTGAAAGTAGTCTATCG
GGTGAATCTAATACGTTGTATATATAAGTTAATAGTCTCTACATGGGCGT
CAGAGAGTGAGACGTAAGCGCGTGCACTCCGCGCGCGTCCGCACTCGCCC
CCCGATTCGCCAGGCGGTTCGAGACATCTTCTCCGATGCCCGTGCAGCTG
CTCCTCCTGAACGACATGTGGACGCAGGGGGGCGGAGAGAACGGAGATTT
CTCGGAAAATGGACAAGAAAACCAGCTTTTGTGAAATCGTTCTTCGGG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13431:122..6569-

>mRNA_S-dermatodea_contig13431.2016.1 ID=mRNA_S-dermatodea_contig13431.2016.1|Name=mRNA_S-dermatodea_contig13431.2016.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at S-dermatodea_contig13431:122..6569- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATGCGAACGATATCACGGGGGTGCGAGGACCGAAGCAGAGCTGCTT
TGTCGACATCGAAAAGATGGATGCGAACGATATCACGGGGGTGCGAGGAC
CGAAGCAGAGCTGCTTTGTCGACATCGAAAAGGATCTGAAGCGGACCCTC
GGTATGACGGATGTGACGCCCCTGAGGAACGTCCTGAGGTCTCTGTCGAC
GTTTGTGCCAGACGTGGGCTACGTTCAGGATCTGAAGCGGACCCTCGGTA
TGACGGATGTGACGCCCCTGAGGAACGTCCTGAGGTCTCTGTCGACGTTT
GTGCCAGACGTGGGCTACGTTCAGGGAATGAACTTCGTGTGCCGGTGCCT
GCTGCAAGTATACGACGATGAAGAAGAGGCGTTTTGGGTGTTGGTTGGCA
TGCTGCAGCGGTTCGGCCTGAGACGACTTTACAGCCCAGGCATGCCGCTC
CTTCGCCTCAGGGAATGAACTTCGTGTGCCGGTGCCTGCTGCAAGTATAC
GACGATGAAGAAGAGGCGTTTTGGGTGTTGGTTGGCATGCTGCAGCGGTT
CGGCCTGAGACGACTTTACAGCCCAGGCATGCCGCTCCTTCGCCTCAGGT
TCTACCAGCTGAATCGGCTGCTGATGTGGCACCTGCCGGATCTGCACGAG
CACTTCGAGGCGTGCGGAGTGCAGACGAACCTGTTCGCGACGAGCTGGTT
CGTGACGCTGCTTTCCGACGGCGGCATGCTTCCGGACTGCGAGGTTCTAC
CAGCTGAATCGGCTGCTGATGTGGCACCTGCCGGATCTGCACGAGCACTT
CGAGGCGTGCGGAGTGCAGACGAACCTGTTCGCGACGAGCTGGTTCGTGA
CGCTGCTTTCCGACGGCGGCATGCTTCCGGACTGCGAGGTAAAGGTTATG
TGGGACCGCATTTTCTTGCACGCCAACAGCCCGGCGTCTCAGTGGGCGCC
CATCTTCCTGTTCGTGCTGGAGCTGCTGCGAAGGGCGGCTGACACCCTGA
AGAAGGAGAGTCGTTTCAGCGAGCTCATCCACCGCCTGGTCAACATGCCT
TTCCGCGAGCTGTGCGAGGGCCGCGGCGCTTGCAGCATGATCGCCGAAGC
CGGCAGGTAAAGGTTATGTGGGACCGCATTTTCTTGCACGCCAACAGCCC
GGCGTCTCAGTGGGCGCCCATCTTCCTGTTCGTGCTGGAGCTGCTGCGAA
GGGCGGCTGACACCCTGAAGAAGGAGAGTCGTTTCAGCGAGCTCATCCAC
CGCCTGGTCAACATGCCTTTCCGCGAGCTGTGCGAGGGCCGCGGCGCTTG
CAGCATGATCGCCGAAGCCGGCAGGCGGTTCGAGACATCTTCTCCGATGC
CCGTGCAGCTGCTCCTCCTGAACGACATGTGGACGCAGGGGGGCGGAGAG
AACGGAGATTTCTCGGAAAATGGACAAGAAAACCAGCTTTTGTGAGCGGT
TCGAGACATCTTCTCCGATGCCCGTGCAGCTGCTCCTCCTGAACGACATG
TGGACGCAGGGGGGCGGAGAGAACGGAGATTTCTCGGAAAATGGACAAGA
AAACCAGCTTTTGTGA
back to top