mRNA_S-dermatodea_contig13419.2011.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13419.2011.1
Unique NamemRNA_S-dermatodea_contig13419.2011.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13419.2011.1 vs. uniprot
Match: A0A6H5J7P2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P2_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.930e-33
Identity = 64/113 (56.64%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:    1 SKEPPPPGDSSRKLADEVLGDFLLLEHATETSEIRDGVGELYFRSIVAYLTTLNGHPSEGLKSLKRCADVLILYPGLSRFSAWGHLAHCTLSGLALSGVHDKYTLLREAYNSV 339
            S EPPPPG+ S K A E+L +  L+ HAT+T E++ GVGELYF SI+AY   L G  S  L  L RCAD+ +  PG+ R +AW HLAHCTL+ L LSG H+KY  LR+AYNSV
Sbjct:  355 STEPPPPGEMSLKFAAELLPECDLMVHATQTPEVKGGVGELYFHSIMAYANVLQGRQSWALDGLWRCADIFLTSPGICRLTAWTHLAHCTLACLVLSGRHEKYESLRQAYNSV 467
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BLAST of mRNA_S-dermatodea_contig13419.2011.1 vs. uniprot
Match: D7FTC3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTC3_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.970e-33
Identity = 63/113 (55.75%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:    1 SKEPPPPGDSSRKLADEVLGDFLLLEHATETSEIRDGVGELYFRSIVAYLTTLNGHPSEGLKSLKRCADVLILYPGLSRFSAWGHLAHCTLSGLALSGVHDKYTLLREAYNSV 339
            S EPPPPG+ S K A E+L +  L+ HAT+T E++ GVGELYF SI+AY   L G  S  +  L RCAD+ +  PG+ R +AW HLAHCTL+ L LSG H+KY  LR+AYNSV
Sbjct:  308 STEPPPPGEMSLKFAAELLPECDLMVHATQTPEVKGGVGELYFHSIMAYANVLQGRQSWAMDGLWRCADIFLTSPGICRLTAWTHLAHCTLACLLLSGRHEKYESLRQAYNSV 420
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13419.2011.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7P2_9PHAE1.930e-3356.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTC3_ECTSI2.970e-3355.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13419contigS-dermatodea_contig13419:2498..6546 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_000810.1
Exons3
Model size342
Cds size339
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13419.2011.1prot_S-dermatodea_contig13419.2011.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13419 2499..6546 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.4792848-CDS-S-dermatodea_contig13419:2498..25891622924285.4792848-CDS-S-dermatodea_contig13419:2498..2589Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13419 2499..2589 -
1694079151.0262146-CDS-S-dermatodea_contig13419:2498..25891694079151.0262146-CDS-S-dermatodea_contig13419:2498..2589Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13419 2499..2589 -
1622924285.4920835-CDS-S-dermatodea_contig13419:4169..43251622924285.4920835-CDS-S-dermatodea_contig13419:4169..4325Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13419 4170..4325 -
1694079151.046385-CDS-S-dermatodea_contig13419:4169..43251694079151.046385-CDS-S-dermatodea_contig13419:4169..4325Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13419 4170..4325 -
1622924285.5094423-CDS-S-dermatodea_contig13419:6454..65461622924285.5094423-CDS-S-dermatodea_contig13419:6454..6546Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13419 6455..6546 -
1694079151.063855-CDS-S-dermatodea_contig13419:6454..65461694079151.063855-CDS-S-dermatodea_contig13419:6454..6546Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13419 6455..6546 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13419.2011.1

>prot_S-dermatodea_contig13419.2011.1 ID=prot_S-dermatodea_contig13419.2011.1|Name=mRNA_S-dermatodea_contig13419.2011.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=113bp
SKEPPPPGDSSRKLADEVLGDFLLLEHATETSEIRDGVGELYFRSIVAYL
TTLNGHPSEGLKSLKRCADVLILYPGLSRFSAWGHLAHCTLSGLALSGVH
DKYTLLREAYNSV
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mRNA from alignment at S-dermatodea_contig13419:2498..6546-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13419.2011.1 ID=mRNA_S-dermatodea_contig13419.2011.1|Name=mRNA_S-dermatodea_contig13419.2011.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4049bp|location=Sequence derived from alignment at S-dermatodea_contig13419:2498..6546- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGAAGGAGCCCCCTCCCCCCGGAGACTCGAGCCGAAAGCTCGCGGACGA
GGTCTTAGGGGACTTTCTGCTGCTGGAACACGCGACAGAAACGTGAGCAT
TAACATGTGTGATTGGTAACTTGTTTTTGTTTTTGTTTTTCGGTGGGGGT
GGGGGTGGGGAACTTATGTTAAACCCATGTCTTATATATGTATCCAGACG
GGCATAGGCCACGCGTCCCAACAATGCCGGGACGGAGCGATATGCCGGAG
TGTCACCCACCGGCCAGGCTGCGTTTCGTTTCACATGGGTGATAGCACCT
GCTAGCCGTCATCGTTGCGTTTGCTACGCCAACCGATATGCCATGAGTTG
GACAGGCCAGATACCGGGCAACCAAATGTTGTACACTCGGCAGGGATGGG
GAGGGGCAAGTAGTAACGCCCATGAAATATGGCTTACAGAAATGATCACA
CCTAGGTCCATGTGCGGCAACTCTCATCTTAGTATTCACGGTGAGATTCG
TTCATGCTCACGGAGTTTTTTCTACTACCAGTCGCTCATTCCATCATAAT
GTTTAGTGTCAAGAGAGGGGGGGTACTGGTACCATTGCGGCTTGTTCAAG
ACTTGTAGTTCCCAGGCTTGGTGACCTCAAATATGCATTGCTTTTGGCTC
CGTACAGGGGCTGGGGGCGCCTAAATAGGCCACCTTGCTCCCTGAAAACA
ATGGAGGGATTCCACAGGTCACACTGTGTTTAAAAAAACAAACACCCAAA
TTCTTTGTTGTTTGGTGGGGGTGGGGTGGGACGACTCTACTGAAAATGTT
GTACGAGGTTTCTGGGGTTGACGCCGCAACGTTCGGCGGAACGCGCAGCC
AAGGCCAATTGATGATAATGCAAAGGAAAGCCGTAGTGACGTGATGATGT
GATGTGATGATGTGATGTGATGAGAGGTGGTGCCAAAATCGAGGCGCTGT
GCGCGCTTGTAGTCATAAGAATCGTAGTCGTAGTCGTAGTCGTAGTCGTA
AGTTGTATTGTGGTGACCCGCATGCATCGCGGACATGCCAGAGAACGGAA
AAGGAGGCGTTCTTAGGCGCCGAGAGCCGGGGGCGGTGGCGCGCACGCAC
CGTTTTCAGGGAAACTAGCATCGTAGAAATGGAAGAATGGACTATATCGC
GCGCCCACAAGCCGTCAAACCTCTACACGAGTTGAAAGAGAGCTTCTGCT
TTAATTGGGCGACGCAACACACGCATTGCCGCTGTTGACCTGTCGGTTTA
GCAGTTTCGACCAATTTGTTCCGGATTGCACAATTCTTATTATTGCTGGC
CGGCCAAGAAGCCCTACGATACCTCCCCCCCTCTGTATTTGGATTGCTCT
TTGGTTGGCTGGTGGCGCGATCACCCGTCGGGCCGTACGCGTCCTGTGTT
CGACGAACGATGTGATGGCTATGATAGCGTCGCGAGGGTAGCATGGAGGG
TTATAACCCTAATCCTTCGACGTAATGATGACTGGACTAGCAGCTGGTGT
CATCCTTGTGAAACGCAGCCTGGCCTTCGAAACCCGGGATGGCCTTTCCT
TCCCGGCATTGTTGGGACACGTCGTCTATGTCCGTTTGAACACACACGAC
ATGCGTTTTAACACAAGTACCCCCCCCTGAAGACAGTATAATAGAGGCTT
ATGAACACAGAACTAGCATTGGGGTCCAGCCAATATTTTTGGTAGAGGAA
AAAGATGGCCCAATGTAGCTCAGTGGAAGCCTACATTACATGCGATGCTA
CCGTGTGACATTAGAAATCAGGAGGTACCTCTAGGAATGGGTTGTTTTTG
TTTTTATATTTTTTGTCAACTTGTATTCGAGCCTGTACTATTACTACTGT
ACCCACCCTGAACAGGGAAAAATGGACGATTGTGATATTATATGCGTTTA
AAGCACGGGGAAGCCGGACGGAGGCAGTAGCAATACTGTGGGATGAGAAG
TGGCCCGAAGAGTAAATATTAGAATTAGGCAGAACAGGAAAACGTGTTTT
TCAGGTACCTTTGGCAGCGTTTGAAGGAACGATTGGCCATCGGCGATCGA
TCCTGTGGGAACAACGCTCCAACCATCCTCCCGAGGACGGGTGGTCAATG
GCCTAACAGCTAACGCATGCAAAAATTGAGTACGGCCCCCTCTCCCTCCC
CCCCACCCCGCCCCACTCCCTCGCTGCTCCCTCCGGTTTCCTTCTTCTTG
CCTCGCCGCGAACCGAGACAGCTCCGAGATCCGAGATGGCGTGGGCGAGC
TTTACTTTCGGTCGATCGTGGCTTACCTCACTACCCTGAATGGCCACCCA
TCGGAGGGCTTGAAGAGCCTCAAGCGTTGCGCCGACGTGCTGATCCTGTA
CCCGGGGCTCTCCCGGTTTTCCGCCTGGTACGTTGGCGTGTTTTGTTTTT
GGTTTTCTGTTAAGGCTTTAGTTTTGCGACGGACTGCTTGCTGTGCGTGT
GGTATTGTGTGTTTCGTGTAAAAAAAGTATACTTCTTGTTTTTGTGTAAT
TGGCTGATTTTGTGACGGAATCGCTGTGTGTTTTGTGTGTGCGTTCGGCT
GTTTTTTTTGTGAGTTCTAGTTTGTTTTATTTAGTGTCACTGGTTTGTTA
AAAACAATTGAATGGCGAGATCCATCCCGGCGTGATTTCATCTCGTGATG
AGAGATATGGTACGAATGAATGACCCCCCCCCCCCCCCACCCCCACCCCC
CCCCCCCCCCCCCCCGCCCCCCCCCAACACCCCCACCCAACATCCCGCAC
NNNNNNNNNNATTTATTGGCCTATTCTGTCCCGGCTTTTTTTTTGTGTTT
ATTGGTGAGTTTGGTTCATTTAATTACCCCCCCCCCCCCCCCCCCCCCCC
CCCGCGCGCGCCTGCCACGCCTACTAAATATGTAATATGTGGTTGCTCGG
TATGCCCAATCAACCCATGGCATATCGGTGGGCGTCGCAAACACAAGGGT
GATGGCTAGCAGCTGGTACCATCCTATTAATAGTGAAACGCAGCCTGACC
GACGAAGACCCGGCATGTAGCTCCATCCCGGAAATGTTGGGACGCGTGGT
CCACGCCCGTCTGTATTCGACATGCGTTTTAACATAAGTTCACCCCGACC
CCCCCCCTGTGCAAAATTTGGCTGCCTGGTATGTCCTGTCAAACCCATGG
CATGTTCGATTCGGCATTGCAAACGCAAGAGTAACGACCAGCACCTGGTA
TCATTATTGTGAAGTGTAGCCTGGCCGGCGAAAACCCAGCACATCGCTCC
GTCCCGGCATTGTTGAGACGCGTGGTCTATGTCCGTTTGGAGACGGCATA
CGTCAAACATACTTGCACCACCAAATGGGGGAGTTTTTGCAATGTATCTT
GTGAGCCAAAAGACATCGGTCGAAGAGTCTTGCCTCTATTCCAAGGGGTG
AAACGCGTCACATCCTATAGGACACCTGCTGAGCCATGGATTGTTGAAAC
GCCGTCCGTTGAGTAGAAATGAGCATATCATAGTCTTGAGTGTGTCACAC
ATTTACCGTCGTGTATGTTGTGTACGCGCAGCGCTCTTTCGTTCGCGCAG
AGATGGAAGCCCCTTTGCGGTACTTGGAGTATAGTGACACCCACAGTGTT
CAACCCTTTTGGCTACCGGGTATCATGTATCGTGTGTCCGATCAACCCAC
GGCATATCCTGTTTGGCGTCACAAACGCAAGGCCGAGACTTGATATGATA
GCAGCTGGCATCATCCTCGTGAAACACAGCCTGGCCTGCGAAAGCCCGCC
ATGCCGCTCCGTCTTGGCAATGCTGGGACGCTTGGTCTACGCCCGTCTGG
ATACGACTTCCTGCGTTAAAAACACGTACCTCCCCGCCCACCTTCCACCC
TACCCCCGACCCCCCGACCCCCCCCCCACCCCCCCCGATCCCCCACGTCG
CTGCTGAACGCAACCAACCGCAAACGTCCATCACATCGCACCCCACTTTA
CTTGCAGGGGGCACCTGGCGCACTGCACTCTGTCGGGACTAGCGCTCTCC
GGGGTGCACGATAAGTATACCCTGTTGCGGGAGGCATACAATTCCGTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13419:2498..6546-

>mRNA_S-dermatodea_contig13419.2011.1 ID=mRNA_S-dermatodea_contig13419.2011.1|Name=mRNA_S-dermatodea_contig13419.2011.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=678bp|location=Sequence derived from alignment at S-dermatodea_contig13419:2498..6546- (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGAAGGAGCCCCCTCCCCCCGGAGACTCGAGCCGAAAGCTCGCGGACGA
GGTCTTAGGGGACTTTCTGCTGCTGGAACACGCGACAGAAACTCGAAGGA
GCCCCCTCCCCCCGGAGACTCGAGCCGAAAGCTCGCGGACGAGGTCTTAG
GGGACTTTCTGCTGCTGGAACACGCGACAGAAACCTCCGAGATCCGAGAT
GGCGTGGGCGAGCTTTACTTTCGGTCGATCGTGGCTTACCTCACTACCCT
GAATGGCCACCCATCGGAGGGCTTGAAGAGCCTCAAGCGTTGCGCCGACG
TGCTGATCCTGTACCCGGGGCTCTCCCGGTTTTCCGCCTGCTCCGAGATC
CGAGATGGCGTGGGCGAGCTTTACTTTCGGTCGATCGTGGCTTACCTCAC
TACCCTGAATGGCCACCCATCGGAGGGCTTGAAGAGCCTCAAGCGTTGCG
CCGACGTGCTGATCCTGTACCCGGGGCTCTCCCGGTTTTCCGCCTGGGGG
CACCTGGCGCACTGCACTCTGTCGGGACTAGCGCTCTCCGGGGTGCACGA
TAAGTATACCCTGTTGCGGGAGGCATACAATTCCGTGGGGGCACCTGGCG
CACTGCACTCTGTCGGGACTAGCGCTCTCCGGGGTGCACGATAAGTATAC
CCTGTTGCGGGAGGCATACAATTCCGTG
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