mRNA_S-dermatodea_contig13417.2010.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13417.2010.1
Unique NamemRNA_S-dermatodea_contig13417.2010.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13417.2010.1 vs. uniprot
Match: D8LFQ9_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ9_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 6.060e-28
Identity = 82/172 (47.67%), Postives = 98/172 (56.98%), Query Frame = 1 
Query:    1 QACRSVFLERRRPYDPRAMRAKGTPLEFFQQPIVTSSPAFTKSSHGMPKPRMSTPPTHTRLPTASPPGVSKSTENDMVASA-RARNENTSG-------------VATLGGVSSEAKRRGGE-GDSGSRVSKKIAPNKLPVVEGSAHCPFCGETVPRVKLSVHLLRCDTLRKT 471
            +ACRSVFLERRRPYDP+AMRA+GTPLEFFQQPI  +S     S+ G       T         AS  GV ++  + +  S+ R    + SG             V T GG S  A   GGE G S  R SKK+A   LP VEGSAHCPFC  ++PR KLS HLLRC  LR++
Sbjct: 1083 KACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDGNPSTSGTGGDGGGT--------AASRRGVGRNNPSSVGGSSVRREGSSQSGGADCVSPGELDVSVGTGGGSSRGA---GGEVGGSFLRRSKKVALKTLPAVEGSAHCPFCSTSIPRAKLSAHLLRCKKLRRS 1243
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BLAST of mRNA_S-dermatodea_contig13417.2010.1 vs. uniprot
Match: A0A6H5KQR3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQR3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 4.890e-26
Identity = 78/170 (45.88%), Postives = 97/170 (57.06%), Query Frame = 1 
Query:    1 QACRSVFLERRRPYDPRAMRAKGTPLEFFQQPI-VTSSPAFTKSSHGMPKPRMSTPPTHTRLPTASPPGVSKSTENDMVASA-RARNENTSGVA----------TLGGVSSEAKRRGGE-GDSGSRVSKKIAPNKLPVVEGSAHCPFCGETVPRVKLSVHLLRCDTLRKT 471
            +ACRSVFLERRRPYDP+AMRA+GTPLEFFQQPI   SS   T S  G      +          AS  GV ++  + +  S+ R    + SG A          ++G     ++  GGE G S  R SKK+A   LP VEG AHCPFC  ++PR KLS HLLRC  LR++
Sbjct:  285 KACRSVFLERRRPYDPKAMRARGTPLEFFQQPIGAASSDNPTTSGKGGDGGGNA----------ASRRGVGRNKPSSVGGSSVRREGSSESGDADRVSPGGLDVSVGTGGGSSRGVGGEVGGSFLRRSKKVALKTLPAVEGRAHCPFCSSSIPRAKLSAHLLRCKKLRRS 444
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13417.2010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFQ9_ECTSI6.060e-2847.67WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KQR3_9PHAE4.890e-2645.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13417contigS-dermatodea_contig13417:945..5936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size474
Cds size474
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13417.2010.1prot_S-dermatodea_contig13417.2010.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13417 945..5936 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.4283679-CDS-S-dermatodea_contig13417:944..10951622924285.4283679-CDS-S-dermatodea_contig13417:944..1095Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13417 945..1095 +
1694079150.9966705-CDS-S-dermatodea_contig13417:944..10951694079150.9966705-CDS-S-dermatodea_contig13417:944..1095Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13417 945..1095 +
1622924285.438379-CDS-S-dermatodea_contig13417:3404..36391622924285.438379-CDS-S-dermatodea_contig13417:3404..3639Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13417 3405..3639 +
1694079151.006809-CDS-S-dermatodea_contig13417:3404..36391694079151.006809-CDS-S-dermatodea_contig13417:3404..3639Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13417 3405..3639 +
1622924285.4488726-CDS-S-dermatodea_contig13417:5848..59361622924285.4488726-CDS-S-dermatodea_contig13417:5848..5936Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13417 5849..5936 +
1694079151.0164268-CDS-S-dermatodea_contig13417:5848..59361694079151.0164268-CDS-S-dermatodea_contig13417:5848..5936Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13417 5849..5936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13417.2010.1

>prot_S-dermatodea_contig13417.2010.1 ID=prot_S-dermatodea_contig13417.2010.1|Name=mRNA_S-dermatodea_contig13417.2010.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=158bp
QACRSVFLERRRPYDPRAMRAKGTPLEFFQQPIVTSSPAFTKSSHGMPKP
RMSTPPTHTRLPTASPPGVSKSTENDMVASARARNENTSGVATLGGVSSE
AKRRGGEGDSGSRVSKKIAPNKLPVVEGSAHCPFCGETVPRVKLSVHLLR
CDTLRKTR
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mRNA from alignment at S-dermatodea_contig13417:945..5936+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13417.2010.1 ID=mRNA_S-dermatodea_contig13417.2010.1|Name=mRNA_S-dermatodea_contig13417.2010.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4992bp|location=Sequence derived from alignment at S-dermatodea_contig13417:945..5936+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGTGCCGCAGCGTGTTCTTGGAGCGGCGGCGGCCTTACGACCCAAG
GGCCATGCGTGCCAAGGGGACACCGCTCGAGTTCTTCCAGCAGCCCATCG
TCACTTCTTCCCCAGCGTTTACGAAGTCCTCACACGGTATGCCTAAGCCT
CGTAAATACGCGTGTTTGTATGTGTGGGCGTTTTTGTGTGTGTGCGTGTT
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTATTTTTATTTATTTATTT
ATTTCCCCCCCCAAAAAGCCGCGCGCCCTGTGGTTGATCTCGTACAGTAA
CGTTCAGGTAGGGCAGAGCAGCCGGGTTCGAATCCGGGCAGGGTCGTTTG
TTTTCTTCTCTGCCTCCGCCGCGGAAAGCACGATAGCGTGAGTAAGCAAA
TAAATTGCCTAGCTGCGGGAGTGCCGAACCCAAGGCATTCGCGATAAAAC
CTAAGGTGATAACCGAGTATAAGAGATATGGAATGGTCCGCTGTGACCTC
GCACGGACTTCGGAAAAGCCGGGCTGTTCTATGTGCGCGAAACAAAAACA
GAAATACAAACACACAGCAGGAGTCAGTGCCCGCGACCGACTCGAGACTG
TGCCTGTATGTGTAGTGTGTTTTTTCCTTGACGGCTGTTTTGGGATTTGG
GATATTTTCTCGCGTTCGTTTATTGTTTCTTTTAACACCATTTTTTAGTT
TACCCTCGTACAAGTTGCAGACTCGGGAATTGGGGTAGTCGGGAACAAAC
TCCAGGGTAAGGTATCGTTAGTACCAGGGTCTTTATTGATATGTAATTGA
TGTGTACAAGCATAGTTCTTACTTGATTTTTTCACCTTGACTCTTTGCGA
AAGCACCTGACCAAAGTTCGGTTCGGATTGAGCCAATCGGCTACCATTAC
ACGTGTGCAAATGGACCAAGGTAAGGACTACGTACTGTGTACGTAGACGA
AGTAGATTTCTGATGAAGGTCTTTTCGTTTTTTACCCGTGACTCTCCGCA
CATGTCACCCACCACAAATCGTGTCGGATTAATCCAATTGTCTACGAGTA
GGTGTGTGCAAATGGACCAGGGTAAGCACTACTCTGTGTACGTAGACGAC
GTCGATTTCTGATGTAGTTTTTTTTCTTTCTACCCCGGACTCTCTGCACA
CGTCACCACAAATCGGATCGTATGAAGCCGACCAGCTATGGCTATAACTC
GTCTATTCTACATCCCATATCTCCCCGGAACAGGATACTTTAGTATGTGT
ACGGTACGATACGCGCCTTCCAATTTTTTGCGCAAAGTCGGTTCTTCGAG
TATTGCTTTCTCGTCCTCTCGCACTCTTTCAGGGATACATCAGAGATACG
ATGCCATCGTCTTCATCACGATGTTATCAACGCAACTCGTCAGCTCGTCG
ACGGAGCGACGCCCCCAAAACATTAAAAAATGGCTTCGAACACAAAGCGA
GCTTTGGAGTCCCGCTTTTTTATAATATTAACCCTTTGGGACTAAGGCTG
TTTTCGGGTAACTGTTTGCTGTTATGGTAGCCAACAGTTATCCGTTATCA
GTTTCCGTTAGTCCCAAAAGGGAAAATAATAATGGCAAACAGTTACCCGA
AAACAGCTTTAGTCCCAAAAGGGTTAATAGCAAGAACAGGTGGTCGAAGC
ATACAAGTACACCTATGGGGGCTTACACGACGATACGCGATGCCATAGTT
TTATGGAGAAAATATATGTGCATAGGATCATTGTGAAAATGTGAGACCCC
CCCCCTGAAAAAAGATGAACATCAAATTAAATAGCAAATGGTGTGTTTCT
GACTTTGTTGTAAAGAGGAAAAATGTGGTCCAAGCTACCTCAACTGAGGT
CTACGTTTATGCATGCTGCTCTGGGGTCCTAATGTACTATAGCTGTACTA
CTGTAGACCACAGAGAAGGTGGCTGTCATTAGGTATGGCACGGTATCCTC
GTCGTGGCGATTCGGTCTGAAGGCTGCCACTCACTTGTTTGTGTGATTGT
GAAAAGTCCTCCCCTGAAGACAGAACATATTTATGAACACAGAACTATAA
TAGCATTTGAGTCCAACCAATATATTTGGTAGAGGAAACACATGGCCCGA
TCTAACTCAGCGGAAGCCTACATTATATAGTATACGATGCTATCGATGCT
ATCGTGTCACCTTAAAATGAAGAGGTAACTCTAGGAATGGGTTGTTTTTA
CTTGTGATGTTTTTGTCAACTTGTATTCGAGCCTGTTCTACCCAACCTTA
TTTGCGCATCCGTTTGTTTTCGAACCTACACAGCCCGTCCTTTCTCCTAC
CCCATACACACTCCCCTCCCCCCTTGTAGACAGGGTAGGAAAAACACCTC
CGCACCACTTGTGGCAAAGTAGAAAGAAACGATTGGCCATCGGCGACCCA
TCCTGTGGGGGCAATGCACCGTTATCTCGATTAAGCGTAGTCAATGGTCT
AACAGCTAAGGCATGAGTACCCCCCCCACACACACCCGCCTTCCTACGGC
TTCGCCACCAGGCGTATCGAAATCTACCGAGAACGACATGGTCGCCAGCG
CGAGGGCAAGGAACGAAAACACCTCAGGGGTGGCGACCCTGGGCGGGGTT
TCCAGTGAGGCCAAGAGGCGCGGTGGGGAAGGGGATTCGGGCTCCCGTGT
CAGCAAGAAGATCGCCCCGAACAAGCTTCCGGTGGTAGAGGGGAGGTACG
AGCCATGTTTCTGTCTGATATGCAATATGTATACTGTGTGTGTATATAAT
ATATATCGCTTTGCGCGTTTTAAAATAGCGATTTTAGAGTTGACCTTTGA
TGCAACTATCCTATTCAACTCGTGATGCCAAATATCATAGGAATTTTAGA
GGGGTACCTTACAAAGTAGTAATTTGTGCCAACACAAACCTCAAAGGAAG
GAAGTAGTCGTGGCTACCCGCTATTAATAGTATATTTGTAACAGGGCGTT
TCACATCACCCTGCCCAGACGCATTTTTACACATGACCTTCGTCACCTAA
AGTGGTGGTAGGTGGCGCGATGAAAAGAGTAAACCCACCTAGTGTGGGGG
TAGGCGATGTGCTAAACTGGTAAACCTACCTAAGGTGGGGGTAGGCGAGG
TGCTAAATGGTAAACCTACCTAAAATGGGGGTATGTTATGTGCTAGGTGA
CTAGCCTACCTAAAGTGGGGGTAGGTGGTGTGCTAAAATGGTAAACCTAC
CTAAGGTGGGGGTAGGCAATGTGCTAAAATGGTAAACCTACCTAAAGTGG
GGGTAGGTGGTGTGCCCAACTTCGTCACCTACTTGCAGTAGGGGTAGGCA
CTTGCTATTTACCAGGGTCGTGTCAAACGCCTTGAAAAAACACGGGTGCA
TTTTGAAATCGCCTGCGTATCTTCATTTTTAGATAAAAAAAGGAGTTTTC
TTTTTGTCTTTTGCCGCGGTAAAAATCAACTGTCATTTTTCGGTGTTTCG
GCGCAGTGGCTCTCTCAAAGTGCAGGAAACATCCAGGTAAGCCTTAAAAC
CAAGCATACTATGATATGGGAAAACGTTTGTCCACTCAGGACACCTTATG
AAGTGTTATAGCTATATAGAGTACTACTAAAGACGTACAGGTACCTTAAA
CAGAAGAACGAGTGTCTTAACCCTTTTGGGACTAAAGCTGTTTTCGGGTA
ACTGTTTGCTATTATTATTTACCCTTTTGGGACTTAGCCTGGGGACTAGT
GCTGTTTTCGGGTAACTGTTGGCTACCGTAATAGCAAACAGTTACTGCCC
GAAAACGGCCTTAGTCCCAAAAGGGTTAAGCAGGTAGCATAATAAAACAG
ACGGAGGTGATATGATAGGACAGCAGATTTGATCTTGTATACTAAATCCG
TAAGCGCCCCCCATCACCACCCAGCTGCATGCGCAGCATTTGGTTGCCCG
GTATGCGTGCCTCAATCAACCCACGGCATATCCTGTTTGGCGTCGCAAAC
GTGAGGATGATGAGTACCACCTGGTACAGCACAGTACAGCTGTAGTACAC
TACAGTACCATCCTTATGGAACGCAGCCTGGACGGCGAAAATTCGGACAC
ACCGCTCCTCCCCGGCATGGTTAGGATGAGATGATGTGACGTGCGTGGCC
TATGTCCGCTTGGCATCGGACCTCGTTAAACACAAGCACACCCCACACCC
ACACCTACCCACACGCACTATCCGCTGACGAGGCATCCTAAGGGGGGCAC
CTCCAAAACGGCTCCATGACTCACGATACCATCTTTTTGGGTCACCACGA
ATGCCCACCGAAAAAGCGAACTATGCCAGAGGAAGAAACGTGTTGAATAT
TTCGTCTTTGGGAAGACAAGCTATTACTAGCTATATGTAGGGGACGTAAT
CGACGTATTTATGCGTTATATATTTTACCCATAAACTGGAAACCGCCCCC
CACTACCAAACCAAGAATTGAAGTAGTAGATAGAATAGGAAAAACACTTT
TTAGCCACCTTTGGCAAAGTAGGAAGGAACGATTGGCCATCGACGATCGA
TCCTGTGTGAACAAAGCTATTGCTTCGTCCTCCCGAGGACGCGTGGTCCA
TGGCCTAACAACGAAGGCATGCAAAACATGAGCCCCCCCTCCCCCACCAC
CACCCACCCACTCACTGACCCTTACCCATTGTGTATTGTAGAAGTAGAGT
TGTGATTCTTATTTTCTCCTTGCCTCTTTGAGCATCTGAGCACAAGCCGG
GTCGGATTAAGGCGATCGGCTATACGTGTGCAAATCAATCAACCGACCAA
TCGATCAATAATCAACCTACACTCGACCCTATCTTCCTGACGAACCTTGG
TGCGTGTTACGGCAGAAGTGTATACTTTTTCACGAAACACGTCAGTAAGC
CCACCCCGCCCCCCCCATCCTCAACCCACCGACCTTCTAACGTGCGTTTG
GCAGCGCGCACTGCCCCTTCTGCGGCGAGACGGTGCCCCGCGTGAAGCTC
TCTGTTCACCTCCTGCGGTGTGACACCTTGCGCAAGACGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13417:945..5936+

>mRNA_S-dermatodea_contig13417.2010.1 ID=mRNA_S-dermatodea_contig13417.2010.1|Name=mRNA_S-dermatodea_contig13417.2010.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=948bp|location=Sequence derived from alignment at S-dermatodea_contig13417:945..5936+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGTGCCGCAGCGTGTTCTTGGAGCGGCGGCGGCCTTACGACCCAAG
GGCCATGCGTGCCAAGGGGACACCGCTCGAGTTCTTCCAGCAGCCCATCG
TCACTTCTTCCCCAGCGTTTACGAAGTCCTCACACGGTATGCCTAAGCCT
CCAGGCGTGCCGCAGCGTGTTCTTGGAGCGGCGGCGGCCTTACGACCCAA
GGGCCATGCGTGCCAAGGGGACACCGCTCGAGTTCTTCCAGCAGCCCATC
GTCACTTCTTCCCCAGCGTTTACGAAGTCCTCACACGGTATGCCTAAGCC
TCGCATGAGTACCCCCCCCACACACACCCGCCTTCCTACGGCTTCGCCAC
CAGGCGTATCGAAATCTACCGAGAACGACATGGTCGCCAGCGCGAGGGCA
AGGAACGAAAACACCTCAGGGGTGGCGACCCTGGGCGGGGTTTCCAGTGA
GGCCAAGAGGCGCGGTGGGGAAGGGGATTCGGGCTCCCGTGTCAGCAAGA
AGATCGCCCCGAACAAGCTTCCGGTGGTAGAGGGGAGGCATGAGTACCCC
CCCCACACACACCCGCCTTCCTACGGCTTCGCCACCAGGCGTATCGAAAT
CTACCGAGAACGACATGGTCGCCAGCGCGAGGGCAAGGAACGAAAACACC
TCAGGGGTGGCGACCCTGGGCGGGGTTTCCAGTGAGGCCAAGAGGCGCGG
TGGGGAAGGGGATTCGGGCTCCCGTGTCAGCAAGAAGATCGCCCCGAACA
AGCTTCCGGTGGTAGAGGGGAGCGCGCACTGCCCCTTCTGCGGCGAGACG
GTGCCCCGCGTGAAGCTCTCTGTTCACCTCCTGCGGTGTGACACCTTGCG
CAAGACGAGGCGCGCACTGCCCCTTCTGCGGCGAGACGGTGCCCCGCGTG
AAGCTCTCTGTTCACCTCCTGCGGTGTGACACCTTGCGCAAGACGAGG
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