mRNA_S-dermatodea_contig13412.2006.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13412.2006.1
Unique NamemRNA_S-dermatodea_contig13412.2006.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13412.2006.1 vs. uniprot
Match: D8LF92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF92_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 8.930e-24
Identity = 78/172 (45.35%), Postives = 93/172 (54.07%), Query Frame = 3 
Query:  372 PCYPRSFDRSE-PLAIGECIEWEGGSRGLFRLLPGGKAKSRLTVTDGGGVYLGPDGVEVPLGDVLLEHQTG---------------GSLLCGVERFTRK-VAGVGDAPYTAKTVRSRLVFGAGTFCRTHSTP--PPSSVFDRLRRGG----ANFSG-AGDLQVVT*GGKVLW 815
            PC   S    E P+A+GEC+E EGGSR L   +PG   K+RLTVTD G VY G DG EVP   VL +  +G               G +LC  ER  R+ V  +GD  + A+    +LV G G FCRTH TP  PP SV D L RG     A+FS   GDL VV   GKV+W
Sbjct:  741 PCGRTSLASGEGPMAVGECVESEGGSRYLG-WVPGVSWKARLTVTDDGAVYSGTDGKEVPFSAVLGKDLSGNGGDXXXXXXXQDGAGGMLCSAERLVRRAVPFIGDFEHRARMRGEKLVVGRGFFCRTHETPRRPPRSVIDALFRGRGGGVASFSEHTGDLHVVNSRGKVVW 911
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BLAST of mRNA_S-dermatodea_contig13412.2006.1 vs. uniprot
Match: D7FWA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA7_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.410e-23
Identity = 77/172 (44.77%), Postives = 92/172 (53.49%), Query Frame = 3 
Query:  372 PCYPRSFDRSE-PLAIGECIEWEGGSRGLFRLLPGGKAKSRLTVTDGGGVYLGPDGVEVPLGDVLLEHQTG---------------GSLLCGVERFTRK-VAGVGDAPYTAKTVRSRLVFGAGTFCRTHSTP--PPSSVFDRLRRGG----ANFSG-AGDLQVVT*GGKVLW 815
            PC   S    E P+A+GEC+E EGGSR L   +PG   K+RLTVTD G VY G DG EVP   VL +  +                G +LC  ER  R+ V  +GD  + A+    +LV G G FCRTH TP  PP SV D L RG     A+FS   GDL VV   GKV+W
Sbjct:  278 PCGRTSLASGEGPMAVGECVESEGGSRYLG-WVPGVSWKARLTVTDDGAVYSGTDGKEVPFSAVLGKGMSSNGGDGGGDGNGQDGAGGMLCSAERLVRRAVPFIGDFEHRARMRGEKLVVGRGFFCRTHETPRRPPRSVIDALFRGRGGGVASFSEHTGDLHVVNSRGKVVW 448
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BLAST of mRNA_S-dermatodea_contig13412.2006.1 vs. uniprot
Match: A0A6H5JF69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF69_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.180e-23
Identity = 79/178 (44.38%), Postives = 95/178 (53.37%), Query Frame = 3 
Query:  372 PCYPRSFDRSE-PLAIGECIEWEGGSRGLFRLLPGGKAKSRLTVTDGGGVYLGPDGVEVPLGDVLLEHQTGGS---------------LLCGVERFTRKVAGV-GDAPYTAKTVRSRLVFGAGTFCRTHSTP--PPSSVFDRLRRGG----ANFSG-AGDLQVVT*GGKVLWTAANDV 833
            PC   S    E P+A+GECIE EGGSR L   +PG   K+RLTVT  G VY G DG EVP   VL +  +G                 + C +ER  R+   + GD  + A+    RLV G G FCRTH+TP  PP SV D L RG     A+FS   GDL VV   GKV W+A +DV
Sbjct:  639 PCGRTSLASGEGPMAVGECIESEGGSRYLG-WVPGVSWKARLTVTTDGAVYSGTDGKEVPFSAVLGKDLSGDGGDGXXXXXGQDGARGMFCSMERLVRRALPIIGDFDHHARMSGERLVVGRGFFCRTHATPRPPPRSVIDALFRGRGGGVASFSEHTGDLHVVNSRGKVEWSAGDDV 815
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13412.2006.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LF92_ECTSI8.930e-2445.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWA7_ECTSI1.410e-2344.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF69_9PHAE2.180e-2344.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13412contigS-dermatodea_contig13412:3304..5753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size852
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13412.2006.1prot_S-dermatodea_contig13412.2006.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13412 3600..5698 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.2465975-UTR-S-dermatodea_contig13412:3303..35991622924285.2465975-UTR-S-dermatodea_contig13412:3303..3599Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13412 3304..3599 +
1694079150.900707-UTR-S-dermatodea_contig13412:3303..35991694079150.900707-UTR-S-dermatodea_contig13412:3303..3599Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13412 3304..3599 +
1622924285.2907343-UTR-S-dermatodea_contig13412:5698..57531622924285.2907343-UTR-S-dermatodea_contig13412:5698..5753Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13412 5699..5753 +
1694079150.93504-UTR-S-dermatodea_contig13412:5698..57531694079150.93504-UTR-S-dermatodea_contig13412:5698..5753Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13412 5699..5753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924285.2588081-CDS-S-dermatodea_contig13412:3599..36581622924285.2588081-CDS-S-dermatodea_contig13412:3599..3658Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13412 3600..3658 +
1694079150.908692-CDS-S-dermatodea_contig13412:3599..36581694079150.908692-CDS-S-dermatodea_contig13412:3599..3658Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13412 3600..3658 +
1622924285.2684042-CDS-S-dermatodea_contig13412:4252..44391622924285.2684042-CDS-S-dermatodea_contig13412:4252..4439Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13412 4253..4439 +
1694079150.9192705-CDS-S-dermatodea_contig13412:4252..44391694079150.9192705-CDS-S-dermatodea_contig13412:4252..4439Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13412 4253..4439 +
1622924285.281156-CDS-S-dermatodea_contig13412:5443..56981622924285.281156-CDS-S-dermatodea_contig13412:5443..5698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13412 5444..5698 +
1694079150.9271827-CDS-S-dermatodea_contig13412:5443..56981694079150.9271827-CDS-S-dermatodea_contig13412:5443..5698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13412 5444..5698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13412.2006.1

>prot_S-dermatodea_contig13412.2006.1 ID=prot_S-dermatodea_contig13412.2006.1|Name=mRNA_S-dermatodea_contig13412.2006.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=167bp
MGWFVVVVWDLFGLLIFVDRYVSPEPCYPRSFDRSEPLAIGECIEWEGGS
RGLFRLLPGGKAKSRLTVTDGGGVYLGPDGVEVPLGDVLLEHQTGGSLLC
GVERFTRKVAGVGDAPYTAKTVRSRLVFGAGTFCRTHSTPPPSSVFDRLR
RGGANFSGAGDLQVVT*
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mRNA from alignment at S-dermatodea_contig13412:3304..5753+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13412.2006.1 ID=mRNA_S-dermatodea_contig13412.2006.1|Name=mRNA_S-dermatodea_contig13412.2006.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2450bp|location=Sequence derived from alignment at S-dermatodea_contig13412:3304..5753+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTCGCGCTGGTGGGGAGGTAGTGAGCGCTGCAGCCGCGGACGCTGTCGCG
CGCGTAGGTGCCCTAGAGGGAACTGTGACCGACGCTGGCGGCGGCGTCGG
CTTTGACAACGTTGCGGGTACCATTGAGGTCGGAGTCGGGGATGGGGACG
GTGGGCAGGCCACTTCGTCCCCGGCGCTTCCTCCAGCGGAAGAGACAGGG
GCAGTGGTGCCGCCGGTTGTGGCACAAGGGTTGGCGAACGGGGGTGACCG
CGAGGGGGGAGGAGAAGGACGAGGATGGTGGCAATGGCTTGTTTTCATGG
GATGGTTTGTTGTGGTGGTATGGGACCTCTTCGGCCTCTTGATATTTGTC
GACAGGTGACTAACTGTTCCGATTGATGGTAAAATTGTCGCTTGCATGTA
CACACTCTGCGTATGTATCACAGAGCGGGGCTTGCTTCGAAACGAGCCGA
TTCTGTCATGCGGGCACACACACCCAAACAAACACCCGCAGCGTAGGCGT
CTAAGGACGGCGCGCCAGAGGTACAGCGGTAACGTGCGTTCGAGGTCGTT
CGTCCATATAAACCCTTCGGAAGCCGATGTGCGAAGTGTTTTGAGACGAA
GCGGCGATGTTTAGGGCCAATGAAATATTCGCAGTCACTCCCGGTATCAA
ATCGAGATATTTGCGATGGGCCTCAACTTCAAACCCCGACGACAGCGATC
GAACGTGAAGCTCCATCTTCACCGCTATCTCCTTTGCGGAGTGATCCAGA
ATACTGCATACGCATCGTGAGGCAGAACGGATGGCGTGCGCACGACCGAC
AACTGGAGCGACCACACAAAACATGCTGCGCGCTCAAACCTTAATGCCAC
GAGGGTGTCCGCGTCTATGTCCGCGCGTCACAGTCATTAAATATCACCGT
CCGTTGCTTCCGACCTCGTTGCCCCTTGTCACGATCGCCCACTGCATAGG
TACGTGAGCCCGGAGCCGTGCTATCCAAGAAGCTTTGATCGGTCAGAGCC
CCTGGCAATAGGAGAGTGCATCGAATGGGAGGGGGGATCGCGGGGTCTCT
TTCGGCTTCTGCCCGGTGGGAAGGCGAAGTCGCGACTTACGGTTACCGAC
GGGGGAGGCGTGTACTTGGGGCCAGATGGCGTCGAGGTGAAGCTGCGGAA
TGCTGCTGTCGCGAAACGACGACAATACATTGGATTTTGTAACAGTACCC
CTCGGCGTACGTCGGCATCGATGCGCTGTGCCGTGGGAAAGAATGTCGTG
TCTTGGTTGATTGCGAACTTTAACCTGCCTGGCCGAACAGCTGCGTGGCG
TTAAGGACGCACTTGTGTCGATACAGCAGCTTGGACTCGAGCATTCTCAG
TCATTCATAGTATTCCCACATCTAAATTTTTACGACAACCTTCGCATCTA
AGAAGTGCACATGCGTATTTCAAATGTTTAGCTTGCCCCGCCCCCGACAT
CGAGCCCTTCCCGTGGCCCGAGAGTTTGCCACCGACTCGTTTCAGCGCAT
GTGCAGCACGCTCCGCTGGGCTCAGCTCTCAGCTCTGCTGGTGTACGTGG
TATGTGCAAGTCGTAAACGTTGAAATGTGCGTTTTTTTGTGGATAATCTC
GTGGTTTTCCTTCATGATATTTTCCGTCATTTTCGAGCGACCGCCCCGTA
TATTGTTTTCCCCGCGGGCCATCGCTGAGCGTGGGAACCAAAGAACGCAC
GAAAACAGACCCTCCGCGTTCGCGGCAGCAGCCAAACTTACAAAACCCGT
GTTTCTCTTACAAGTACAGGCAGTCGGCTTTTATCCCTTGAGTGTCGTGC
GTCTCGTTTTTCCCTTCTGTGGTCGGACGGTGATGCTCCTACATTTTACC
TCGGCACCCCTGTCTTCAAACTTTCCTCGCATTCCCTCGAGCATTCCGGC
GGCTCCCCAATCTGTACCTCGGATGCCGTACCGCCTCATCAAGCAATAAC
GCGCCGCGCGAGAGCTGCCGCTGCGCGCGCCTTGTCCCTCTACATAAATA
CATCGAGAGTTAGTTGTATAAACAACACGCGCCCCTGCCGAACAGCACAT
CAAAACACACCAAAGGTATTCAACCGGTGCGTCTGGCGTGTTTGCTCGCT
TCCCCATCCCCCTGTCTTAAAAACCCTCATTGGCCCACAGGTGCCTCTGG
GAGACGTTCTCCTCGAGCACCAGACCGGAGGCAGCCTGCTCTGCGGTGTC
GAGCGCTTCACTCGCAAGGTGGCTGGCGTTGGTGACGCCCCATACACGGC
TAAGACCGTGCGCTCACGGCTCGTGTTCGGTGCCGGCACCTTCTGCCGGA
CACACTCGACTCCGCCCCCGTCCTCTGTGTTCGACAGGCTCCGCCGCGGG
GGCGCGAACTTCTCAGGCGCCGGCGACCTCCAGGTCGTCACTTGAGGCGG
CAAGGTACTGTGGACTGCGGCTAACGACGTGGTGGCCGCGGGTGGGCGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13412:3304..5753+

>mRNA_S-dermatodea_contig13412.2006.1 ID=mRNA_S-dermatodea_contig13412.2006.1|Name=mRNA_S-dermatodea_contig13412.2006.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at S-dermatodea_contig13412:3304..5753+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGATGGTTTGTTGTGGTGGTATGGGACCTCTTCGGCCTCTTGATATT
TGTCGACAGATGGGATGGTTTGTTGTGGTGGTATGGGACCTCTTCGGCCT
CTTGATATTTGTCGACAGGTACGTGAGCCCGGAGCCGTGCTATCCAAGAA
GCTTTGATCGGTCAGAGCCCCTGGCAATAGGAGAGTGCATCGAATGGGAG
GGGGGATCGCGGGGTCTCTTTCGGCTTCTGCCCGGTGGGAAGGCGAAGTC
GCGACTTACGGTTACCGACGGGGGAGGCGTGTACTTGGGGCCAGATGGCG
TCGAGGTACGTGAGCCCGGAGCCGTGCTATCCAAGAAGCTTTGATCGGTC
AGAGCCCCTGGCAATAGGAGAGTGCATCGAATGGGAGGGGGGATCGCGGG
GTCTCTTTCGGCTTCTGCCCGGTGGGAAGGCGAAGTCGCGACTTACGGTT
ACCGACGGGGGAGGCGTGTACTTGGGGCCAGATGGCGTCGAGGTGCCTCT
GGGAGACGTTCTCCTCGAGCACCAGACCGGAGGCAGCCTGCTCTGCGGTG
TCGAGCGCTTCACTCGCAAGGTGGCTGGCGTTGGTGACGCCCCATACACG
GCTAAGACCGTGCGCTCACGGCTCGTGTTCGGTGCCGGCACCTTCTGCCG
GACACACTCGACTCCGCCCCCGTCCTCTGTGTTCGACAGGCTCCGCCGCG
GGGGCGCGAACTTCTCAGGCGCCGGCGACCTCCAGGTCGTCACTTGAGTG
CCTCTGGGAGACGTTCTCCTCGAGCACCAGACCGGAGGCAGCCTGCTCTG
CGGTGTCGAGCGCTTCACTCGCAAGGTGGCTGGCGTTGGTGACGCCCCAT
ACACGGCTAAGACCGTGCGCTCACGGCTCGTGTTCGGTGCCGGCACCTTC
TGCCGGACACACTCGACTCCGCCCCCGTCCTCTGTGTTCGACAGGCTCCG
CCGCGGGGGCGCGAACTTCTCAGGCGCCGGCGACCTCCAGGTCGTCACTT
GA
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