mRNA_S-dermatodea_contig13398.1994.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13398.1994.1
Unique NamemRNA_S-dermatodea_contig13398.1994.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13398.1994.1 vs. uniprot
Match: D8LHU5_ECTSI (cAMP-dependent protein kinase regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHU5_ECTSI)

HSP 1 Score: 73.2 bits (178), Expect = 7.520e-14
Identity = 35/41 (85.37%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    1 VFIAGINNDKPLRTLKPGDAFGELALMYNSPRTATVKVSAG 123
            VFIAG NND+PLRTLK GDAFGELALMYNSPRTATVK   G
Sbjct:  133 VFIAGKNNDEPLRTLKSGDAFGELALMYNSPRTATVKAVTG 173
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BLAST of mRNA_S-dermatodea_contig13398.1994.1 vs. uniprot
Match: A0A835Z5U7_9STRA (Camp-dependent protein kinase regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5U7_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.150e-6
Identity = 24/42 (57.14%), Postives = 29/42 (69.05%), Query Frame = 1 
Query:    1 VFIAGINNDKPLRTLKPGDAFGELALMYNSPRTATVKVSAGV 126
            VFI G N+   LR +K G  FGELALMYN+PR+AT+K    V
Sbjct:  124 VFIEGKNDGAALRVMKAGSGFGELALMYNAPRSATIKAKVAV 165
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BLAST of mRNA_S-dermatodea_contig13398.1994.1 vs. uniprot
Match: A0A835Z617_9STRA (Camp-dependent protein kinase regulatory subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z617_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.170e-6
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    1 VFIAGINNDKPLRTLKPGDAFGELALMYNSPRTATVKVSAGV 126
            VFI G N+   LRT++ G  FGELALMYN+PR+AT+K    V
Sbjct:  143 VFIEGKNDGAALRTIRTGGGFGELALMYNAPRSATIKAVGDV 184
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BLAST of mRNA_S-dermatodea_contig13398.1994.1 vs. uniprot
Match: A0EC91_PARTE (Uncharacterized protein n=1 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0EC91_PARTE)

HSP 1 Score: 49.7 bits (117), Expect = 1.950e-5
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    7 IAGINNDKPLRTLKPGDAFGELALMYNSPRTATVKVSAGV 126
             AG+  +K L+T  PG++FGELAL+YN+PR AT+K    V
Sbjct:  175 FAGLQEEKLLKTYIPGESFGELALLYNAPRAATIKAIENV 214
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BLAST of mRNA_S-dermatodea_contig13398.1994.1 vs. uniprot
Match: A0A1A8L502_9TELE (Cyclic nucleotide-binding domain-containing protein (Fragment) n=1 Tax=Nothobranchius pienaari TaxID=704102 RepID=A0A1A8L502_9TELE)

HSP 1 Score: 47.4 bits (111), Expect = 2.300e-5
Identity = 21/38 (55.26%), Postives = 25/38 (65.79%), Query Frame = 1 
Query:   28 KPLRTLKPGDAFGELALMYNSPRTATVKVSAGVDAGCL 141
            + LRTL  GD FGELA++YN  RTATVK    V   C+
Sbjct:   16 RDLRTLSKGDVFGELAILYNCKRTATVKAKTSVHVWCM 53
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BLAST of mRNA_S-dermatodea_contig13398.1994.1 vs. uniprot
Match: A0A2A9MJH2_9APIC (cAMP-dependent protein kinase regulatory subunit n=1 Tax=Besnoitia besnoiti TaxID=94643 RepID=A0A2A9MJH2_9APIC)

HSP 1 Score: 48.5 bits (114), Expect = 5.010e-5
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:   13 GINNDKPLRTLKPGDAFGELALMYNSPRTATV 108
            G   DK L  +KPGDAFGELALMYN+PR ATV
Sbjct:  180 GEKEDKFLCKMKPGDAFGELALMYNAPRAATV 211
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BLAST of mRNA_S-dermatodea_contig13398.1994.1 vs. uniprot
Match: A0A6P6LZ47_CARAU (cGMP-dependent protein kinase n=11 Tax=Cyprinoidei TaxID=30727 RepID=A0A6P6LZ47_CARAU)

HSP 1 Score: 48.1 bits (113), Expect = 6.960e-5
Identity = 21/38 (55.26%), Postives = 26/38 (68.42%), Query Frame = 1 
Query:   28 KPLRTLKPGDAFGELALMYNSPRTATVKVSAGVDAGCL 141
            + LRTL PGD FGELA++YN  RTA+VK    V   C+
Sbjct:  161 RDLRTLSPGDVFGELAILYNCKRTASVKAITAVQLWCI 198
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BLAST of mRNA_S-dermatodea_contig13398.1994.1 vs. uniprot
Match: A0A7S0MVM7_9CHLO (cGMP-dependent protein kinase n=2 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0MVM7_9CHLO)

HSP 1 Score: 47.8 bits (112), Expect = 9.570e-5
Identity = 24/42 (57.14%), Postives = 27/42 (64.29%), Query Frame = 1 
Query:    1 VFIAGINNDKPLRTLKPGDAFGELALMYNSPRTATVKVSAGV 126
            VFI      K L  LKPGD FGE+ALMYNS R A+V+ S  V
Sbjct:  161 VFIVASGASKLLGQLKPGDTFGEMALMYNSVRAASVQASTEV 202
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13398.1994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LHU5_ECTSI7.520e-1485.37cAMP-dependent protein kinase regulatory subunit n... [more]
A0A835Z5U7_9STRA1.150e-657.14Camp-dependent protein kinase regulatory subunit n... [more]
A0A835Z617_9STRA2.170e-657.14Camp-dependent protein kinase regulatory subunit n... [more]
A0EC91_PARTE1.950e-552.50Uncharacterized protein n=1 Tax=Paramecium tetraur... [more]
A0A1A8L502_9TELE2.300e-555.26Cyclic nucleotide-binding domain-containing protei... [more]
A0A2A9MJH2_9APIC5.010e-571.88cAMP-dependent protein kinase regulatory subunit n... [more]
A0A6P6LZ47_CARAU6.960e-555.26cGMP-dependent protein kinase n=11 Tax=Cyprinoidei... [more]
A0A7S0MVM7_9CHLO9.570e-557.14cGMP-dependent protein kinase n=2 Tax=Pyramimonas ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13398contigS-dermatodea_contig13398:958..1131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue6e-11
Seed eggNOG ortholog2880.D8LHU5
KEGG koko:K04739
KEGG Pathwayko04910,map04910
EggNOG free text desc.cAMP-dependent protein kinase regulator activity
EggNOG OGsCOG0664@1,KOG1113@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924284.017064-CDS-S-dermatodea_contig13398:957..11311622924284.017064-CDS-S-dermatodea_contig13398:957..1131Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13398 958..1131 -
1694079149.9332023-CDS-S-dermatodea_contig13398:957..11311694079149.9332023-CDS-S-dermatodea_contig13398:957..1131Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13398 958..1131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13398.1994.1prot_S-dermatodea_contig13398.1994.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13398 958..1131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13398.1994.1

>prot_S-dermatodea_contig13398.1994.1 ID=prot_S-dermatodea_contig13398.1994.1|Name=mRNA_S-dermatodea_contig13398.1994.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=58bp
VFIAGINNDKPLRTLKPGDAFGELALMYNSPRTATVKVSAGVDAGCLLCE
GEDAIICD
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mRNA from alignment at S-dermatodea_contig13398:958..1131-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13398.1994.1 ID=mRNA_S-dermatodea_contig13398.1994.1|Name=mRNA_S-dermatodea_contig13398.1994.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=174bp|location=Sequence derived from alignment at S-dermatodea_contig13398:958..1131- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTTCATCGCAGGGATTAACAACGACAAACCCCTGCGTACCCTGAAACC
CGGCGATGCTTTCGGGGAGCTCGCTCTCATGTACAACTCTCCGCGCACTG
CCACTGTCAAGGTGAGTGCTGGAGTAGACGCGGGGTGTTTGTTGTGTGAG
GGTGAAGACGCCATCATATGTGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13398:958..1131-

>mRNA_S-dermatodea_contig13398.1994.1 ID=mRNA_S-dermatodea_contig13398.1994.1|Name=mRNA_S-dermatodea_contig13398.1994.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at S-dermatodea_contig13398:958..1131- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTTCATCGCAGGGATTAACAACGACAAACCCCTGCGTACCCTGAAACC
CGGCGATGCTTTCGGGGAGCTCGCTCTCATGTACAACTCTCCGCGCACTG
CCACTGTCAAGGTGAGTGCTGGAGTAGACGCGGGGTGTTTGTTGTGTGAG
GGTGAAGACGCCATCATATGTGATGTTTTCATCGCAGGGATTAACAACGA
CAAACCCCTGCGTACCCTGAAACCCGGCGATGCTTTCGGGGAGCTCGCTC
TCATGTACAACTCTCCGCGCACTGCCACTGTCAAGGTGAGTGCTGGAGTA
GACGCGGGGTGTTTGTTGTGTGAGGGTGAAGACGCCATCATATGTGAT
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