mRNA_S-dermatodea_contig13398.1995.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13398.1995.1
Unique NamemRNA_S-dermatodea_contig13398.1995.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13398.1995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13398contigS-dermatodea_contig13398:3605..5035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size326
Cds size222
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13398.1995.1prot_S-dermatodea_contig13398.1995.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13398 4007..5035 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924283.9570227-UTR-S-dermatodea_contig13398:3604..36671622924283.9570227-UTR-S-dermatodea_contig13398:3604..3667Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13398 3605..3667 -
1694079149.8746712-UTR-S-dermatodea_contig13398:3604..36671694079149.8746712-UTR-S-dermatodea_contig13398:3604..3667Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13398 3605..3667 -
1622924283.96585-UTR-S-dermatodea_contig13398:3966..40061622924283.96585-UTR-S-dermatodea_contig13398:3966..4006Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13398 3967..4006 -
1694079149.8900268-UTR-S-dermatodea_contig13398:3966..40061694079149.8900268-UTR-S-dermatodea_contig13398:3966..4006Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13398 3967..4006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924283.9742658-CDS-S-dermatodea_contig13398:4006..40351622924283.9742658-CDS-S-dermatodea_contig13398:4006..4035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13398 4007..4035 -
1694079149.9006464-CDS-S-dermatodea_contig13398:4006..40351694079149.9006464-CDS-S-dermatodea_contig13398:4006..4035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13398 4007..4035 -
1622924283.9826643-CDS-S-dermatodea_contig13398:4842..50351622924283.9826643-CDS-S-dermatodea_contig13398:4842..5035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13398 4843..5035 -
1694079149.9209828-CDS-S-dermatodea_contig13398:4842..50351694079149.9209828-CDS-S-dermatodea_contig13398:4842..5035Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13398 4843..5035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13398.1995.1

>prot_S-dermatodea_contig13398.1995.1 ID=prot_S-dermatodea_contig13398.1995.1|Name=mRNA_S-dermatodea_contig13398.1995.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=74bp
TKTRRSTGGKVDTEERATSCVHVECVGFCYRAPSQHFGIDSHLPLLRRTP
AGGVALGRRSPQNGVRLQHLQPG*
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mRNA from alignment at S-dermatodea_contig13398:3605..5035-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13398.1995.1 ID=mRNA_S-dermatodea_contig13398.1995.1|Name=mRNA_S-dermatodea_contig13398.1995.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1431bp|location=Sequence derived from alignment at S-dermatodea_contig13398:3605..5035- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGAAAACGCGGAGAAGCACAGGCGGCAAGGTCGATACCGAGGAGCGCGC
CACATCTTGCGTACACGTGGAGTGCGTCGGTTTTTGCTACCGAGCTCCCT
CTCAGCACTTCGGAATTGACTCGCATCTACCCCTCTTGCGACGAACTCCT
GCCGGAGGTGTCGCTTTAGGACGAAGAAGTCCGCAAAACGGGGGTGAGCG
AACCGGGCAATGATAGAGACTTTGGGGGTGTTCTCTCACCCGCCTCAGCA
GATTTAATGGGTGTGCCGTCTTCGTTCCTGATAGGCGTATTTATTGCTGT
AGCTGCGCTGTAGTCCGCCGGCTTGTCTTGATTCGCTTCGGCAGCTCGGG
CGGTCCCTCCTCAGAATTATCCCAATAGGTTTTTGCCTGTAAATCCTTGG
GCCAAAACAATAGCATGCACCTCACGGCATTCCTGTTGCATGGTTCCAGA
GGATGCCGATAACGCATAATCGTTTATGCTTTCGATATCTGCAGCGCTGT
GCGAGTGCCATTCAATCAGAAAGTGTCACATCCGCGGCCGGCTTCGGCTC
ATTTACAGTCTCACGGACCGACGAATTAACGGCGACTCCGTCTTTGTTGC
AGATAAAACAAGGTGCACAATCTCCGTCCCCATCGGAAACGTAGACCTTC
CAACGCGCAACTCTGGCGTTGACAATCACACGAGTATGATGCAGTAGCCC
AACCGACTCTTACCGAACGAACACATGCACTCTACCTTCGTTTATTTGCA
CAAAACAGTGAAGCGTTGATACACCGGGGCCTGTCGGCGCTTTCGTGAAC
GCCCTGCGTACCTCGTAATCCTCGATTGCGCACTCTCGGCTACTCCCGTG
AGCATGCATACGGCACCTTGGCCTTGCGAGCGCTAGCTTCCCTTAATCCT
TTATAGCAAAAAGAGGGTGGACACACCCCAATTAAACGAGGGCCGACTCT
AATGACTCCCCCGAAATCCCATGAATGTACGTGATTGCTCGCTCTCACAG
TCAGGCTACAGCACCTTCAGCCTGGGTAGGTTCACCATGGGAGCAAAGAA
CTCCAAACGTCGGGAATCGGTAAGTCCCACTAAGCCAAGTGAGATCGAGG
AAGTACTTGGGTGGTCATAAACTTTGATATAGGGCACACGGCTCGGAGAA
GGGGACTTCAGGCTTGCGTGGTTACACCTAGTACGCTCAACCCGCGCATT
CACACAACAGGCCTACCATGACCACGAGGGCGTCAATGCGCTGCTTTTCA
TTGTTCGCCCCTTAACGTGGATCGTGTCGAACTTCAGTTCGTTGTCCGAA
CCCCGAGCGTTGAAACGACGACCACGTTACTTCAACGCGTTCTACCTTCC
AACGTAAACTTTTCTTAGGCTTCTGCGAAAGCGGAGGAGGTGGCGGCGGA
AGCTCCAGCTTCTCCCGTGCCGAAGGGAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13398:3605..5035-

>mRNA_S-dermatodea_contig13398.1995.1 ID=mRNA_S-dermatodea_contig13398.1995.1|Name=mRNA_S-dermatodea_contig13398.1995.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at S-dermatodea_contig13398:3605..5035- (Saccorhiza dermatodea SderLu1190fm monoicous)
ACGAAAACGCGGAGAAGCACAGGCGGCAAGGTCGATACCGAGGAGCGCGC
CACATCTTGCGTACACGTGGAGTGCGTCGGTTTTTGCTACCGAGCTCCCT
CTCAGCACTTCGGAATTGACTCGCATCTACCCCTCTTGCGACGAACTCCT
GCCGGAGGTGTCGCTTTAGGACGAAGAAGTCCGCAAAACGGGGACGAAAA
CGCGGAGAAGCACAGGCGGCAAGGTCGATACCGAGGAGCGCGCCACATCT
TGCGTACACGTGGAGTGCGTCGGTTTTTGCTACCGAGCTCCCTCTCAGCA
CTTCGGAATTGACTCGCATCTACCCCTCTTGCGACGAACTCCTGCCGGAG
GTGTCGCTTTAGGACGAAGAAGTCCGCAAAACGGGGTCAGGCTACAGCAC
CTTCAGCCTGGGTAGTCAGGCTACAGCACCTTCAGCCTGGGTAG
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