mRNA_S-dermatodea_contig13396.1993.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13396.1993.1
Unique NamemRNA_S-dermatodea_contig13396.1993.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13396.1993.1 vs. uniprot
Match: D7FXA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA9_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 3.480e-16
Identity = 50/93 (53.76%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:   28 APPQPFTHWLEDYKSGMEFEVYSLALIIPQTSFLCGATFDKAALSLFKSSKGEVLLMAVVRDLRDHPEYRHAAARGSFGSGGTASSLDMNGIA 306
            APP     WL DYK GME+EVYSLAL + + S L G TF +AAL L++ SKGEVLLMAVVRD RD        A    GSG  A +   NG+A
Sbjct:  128 APPM----WLTDYKRGMEYEVYSLALNVGEDSCLWGLTFSRAALELYEDSKGEVLLMAVVRDFRD-------VAAAGLGSG-NAKATPANGLA 208
[Close]
BLAST of mRNA_S-dermatodea_contig13396.1993.1 vs. uniprot
Match: A0A6H5K4I5_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4I5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.780e-14
Identity = 40/65 (61.54%), Postives = 48/65 (73.85%), Query Frame = 1 
Query:   28 APPQPFTHWLEDYKSGMEFEVYSLALIIPQTSFLCGATFDKAALSLFKSSKGEVLLMAVVRDLRD 222
            APP     WL DYK GM++EVYSLAL + + S L G TF +AAL L++ SKGEVLLMA+VRD RD
Sbjct:  529 APPM----WLTDYKRGMKYEVYSLALKVWEGSCLWGLTFSRAALELYEDSKGEVLLMAMVRDFRD 589
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13396.1993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXA9_ECTSI3.480e-1653.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4I5_9PHAE3.780e-1461.54Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13396contigS-dermatodea_contig13396:782..4148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size310
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13396.1993.1prot_S-dermatodea_contig13396.1993.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13396 784..4148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924283.9043233-CDS-S-dermatodea_contig13396:783..8341622924283.9043233-CDS-S-dermatodea_contig13396:783..834Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13396 784..834 -
1694079149.8453045-CDS-S-dermatodea_contig13396:783..8341694079149.8453045-CDS-S-dermatodea_contig13396:783..834Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13396 784..834 -
1622924283.9160078-CDS-S-dermatodea_contig13396:2125..22311622924283.9160078-CDS-S-dermatodea_contig13396:2125..2231Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13396 2126..2231 -
1694079149.8550465-CDS-S-dermatodea_contig13396:2125..22311694079149.8550465-CDS-S-dermatodea_contig13396:2125..2231Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13396 2126..2231 -
1622924283.9238522-CDS-S-dermatodea_contig13396:3999..41481622924283.9238522-CDS-S-dermatodea_contig13396:3999..4148Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13396 4000..4148 -
1694079149.866977-CDS-S-dermatodea_contig13396:3999..41481694079149.866977-CDS-S-dermatodea_contig13396:3999..4148Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13396 4000..4148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13396.1993.1

>prot_S-dermatodea_contig13396.1993.1 ID=prot_S-dermatodea_contig13396.1993.1|Name=mRNA_S-dermatodea_contig13396.1993.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=102bp
ERRGEAGLEAPPQPFTHWLEDYKSGMEFEVYSLALIIPQTSFLCGATFDK
AALSLFKSSKGEVLLMAVVRDLRDHPEYRHAAARGSFGSGGTASSLDMNG
IA
back to top

mRNA from alignment at S-dermatodea_contig13396:782..4148-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13396.1993.1 ID=mRNA_S-dermatodea_contig13396.1993.1|Name=mRNA_S-dermatodea_contig13396.1993.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3367bp|location=Sequence derived from alignment at S-dermatodea_contig13396:782..4148- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAGGAGAGGGGAGGCGGGGCTCGAGGCCCCTCCCCAGCCGTTTACGCA
CTGGCTGGAGGACTATAAGAGCGGGATGGAGTTTGAGGTGTACTCGCTGG
CCCTGATCATTCCGCAGACGTCTTTTCTGTGCGGCGCTACGTTCGACAAG
TGAGTGTGGGTGGGTTTGTTGGTGTTTGTGTTGGTGGTTGTGGTGGTGTT
GTGGTGGTGTTGGTTTTGTTGGTGGGGTGGTGGTTGTGTTGGTGTTGGTG
TTGGTGTTGATGGTGGTGTTGGTGTTGGTGGTGTTGGTTTTGTTGGTGGT
GATGGTGGTGGTTATGTTGGTGTTGGTGTTGGGTGTGTTGGTGGGGTGGT
GGTGATGGTGGTGGTGGTTATGTTGGTGTTGGTGTTGGTGGTGGTGGTTT
TGTTGGTTTTGTTGGGTGTGTTGGTGGGGTGGTGGTGATGGTGGTGGTGG
TGTTGGTGTTGTTGGTGTTGGTTTTGTTGGGTGTGTTGGGTGTGTTGGTG
GGGCGGGGGTGATGTTGGTGGTGGTTGTGTTGTTTTTTGTTGTTGTCGTT
GGTGTCGGTGTCGGTGTTGTGTTGTTGTTGTTGGTGGTGGTGGTACTAGT
ATTACGGAGGACCATAGTTAAGTTAACTTTAACAGGTCCAAATTTGCCAC
AAGTCTCAACTTGCGAAAAAAACGAATAGGTGCGGGATTATCGAGATTTC
ATGATCAATGTTGTTGTGTTAAAAAGCCAGACAGACCTCGCGCTTTTTTT
TATCTTGGTGGTATTTTTGTTCGTTGTTTGGGTATTTCATCGTCGGAAAC
AGTTGGGTATTGTAGTCATGGTCGGGAGATTTGGTCCTGATTACTTGATT
ATAGTGTACCTCCGTAATGGTGGTTTTGGTGATGTTGGTGATGTTGATGG
TGGTGTTGTTATCATTATTGTTGGCGTTTTTGTTGGTGGTGGTTTTGGCA
TTGATGGTGTTGGCGGTGTTATTGTTGATCACCTTGTATTCATCTGATCT
TCTGCGTCGAAGCAGTCCCGAGTACCATACGTATCATACGTCTGTCGTCT
CTGCGGCGCTATGTTCGAAAAGAGTGTGTGTGTGTGTTTTTTTTTTTGAA
TTCTTAGCGATGCTGCTTTGGGGATGTTGTTGTTGTTGTCGTTTTGTCGT
TGGAATGTCTTCTGTGCCTGTCTCTGTAGAGGGACCGAAAACATGCTATT
TAATAGGGCAACTTGGCCATTTCTTATGTGATGCAAGCTCTCGCCGCGAC
AACAGCGCATCGAGCACGACGAACGAAAAACCCCACACAAAAAAATGCAG
ACCACTACCGTGATCCCCCCCCCCCACCCCCACCACATCCCGCCTCCACA
TTCGCCCACCCCCCTACAAAATTAAAATGATTTCAATACCATAGAACGAG
CGTTGAGGTTCCACCTTTGTGAAGGAAGAAAATATTGTCCAAGCTATTAT
ACACACCTATGGGGCCTTAGCCCTGTTGGTACTACTAAATTAGTACTATT
ATATTAGTATTAATAGGGCTGTCCGAAACGACAAAACTCTCTCGATGCCA
GTCGACAGCTACAGCCCCGTTTCCCTTGCGCTCCGTTCTCTCTCATTCCT
GCGTCATAACCCATGGAGTTCCCCAGGGTCCCGCTTCAAGCACGCCTCAT
TACGTGCAAACAGGGGGCTAGTACCAATAGGGTTAAATTAGGTATGATGC
CATGGTTTTATCGCCATATATGATGCTTTAAGACAACCCCCCCACCCCCA
CCCCCCNNNNNNNNNNGCTAGCGAAAAAGAGGGTTATAACAAAAATGTTA
AAATTGTGTCTTCTCCCCGCTTTTTTCTCCCTAAATTATTCTTTTCAAAC
CCCCCCCCCCCCCCCCCCCCCCCGCCTCGCCCCCCACCCCCACCTACCTC
CTCTTCTCCGAAACCAGGGCGGCGTTGTCGCTGTTCAAGTCATCGAAGGG
GGAGGTGCTCCTCATGGCCGTTGTCCGCGACCTTCGGGACCATCCTGAAT
ACCGACATGCGGCGGCGCGCGGGGTGAGGAAGTCGCAGCAAAGATACATC
ACCAGGATATACCTCAGGACAAAGACTCGTGTCGTGTATGATACCACGAC
CACATAACATAATATCGTTACGTGCTAAAGGGCGCACCAAAACAGGGGGC
TATCACCAACAAGGTTGAAACTGTTACTCTGACTTATAATAAGTGTGGGA
GTTTCGTTTATCATACATACGTAAACCCTAAACCTCTAAAAATACAACTC
ACGTGTCGCACTTGCTCGAACCACCACCACCACCACCACCACCACCACCA
CCACAAGGGTCAAGAGCGTTACTCTTTTAATTTTTAATGGTGGGAGTTCC
GCCATCACATACATACACGTACCAGTACACCCTTAACCCTTTTGGTACTA
TTAGTAGTATTAATATTAATATTAATATCTTGTTAATTGTATTAGGGCTC
TCCGAAACTACCAAAAGTTCTCTCGATGCCAGTCGACAGCTACGACACCC
CCGGCTCCCTTGGGCTCCTCTCTTTTTGCGTCAAATGGCGTACAGCATCC
TGCGCCATATGCCGTGGGTTCTGTTCCCCAGGGCCCCACATCAAGCACGC
CTCACTACGTGCTAACCGCCGCTCCAAACAGGGTGCTAGTACCAATTCAC
TTGGCTTCACTATGCTTCCCTGAAGAATTTCCTACCGGCTGGGTACTAGG
GTGTCGGCGGTTAGAGAGGAAGTAGGCATACTTGGAATATGACAATAGCG
TAAAATTACGGATTATGACGGATAAGGAGCAGTGGCCCACGTGAAGCAGC
GCGAACAGCTCGGGCCTGTCAACAAAAAAAAACGGTCGTTGCGAGGGCCC
TATTACGGAGGTACACTATAATCAAGTAATCAGGACCAAATATCATGACC
ATGAATACCCAACTATTGCGACCGTGAATACCCAAATAACAAAAATCTCA
TGAGAAACAAAAAAAATACACGAGATGTGGCCATACACAAGAACATCGAC
CTTGAAATCTTGATAATTCCAGCCTATTTTGATTTTCCTAGGTTGAAACC
TGTGGCAAATTTGGACCTGTTAACTATGGTCTATTCCCCCGTAATAGCAA
AGCAAAAGGGTTAACCTGTCAAAAACAATAACGTGTGGACACTTGTTCAC
ACCACCACCACCACCACCACCACCACCCGCTTTTGTTTTCTCTTTTTCTT
TTTTCTTTTCATTTCGTCCTCCGCGGGGACGGACGGCGACGACAACGTCG
ACGGCGGCAACGTCGACGGGGAAACATCTCCAACCCGCGGCAACATCTGG
CGTCGGGGGCGCAGTCTTTCGGGAGCGGAGGCACCGCCAGCAGCCTCGAC
ATGAACGGGATTGCCAC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13396:782..4148-

>mRNA_S-dermatodea_contig13396.1993.1 ID=mRNA_S-dermatodea_contig13396.1993.1|Name=mRNA_S-dermatodea_contig13396.1993.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at S-dermatodea_contig13396:782..4148- (Saccorhiza dermatodea SderLu1190fm monoicous)
GAGAGGAGAGGGGAGGCGGGGCTCGAGGCCCCTCCCCAGCCGTTTACGCA
CTGGCTGGAGGACTATAAGAGCGGGATGGAGTTTGAGGTGTACTCGCTGG
CCCTGATCATTCCGCAGACGTCTTTTCTGTGCGGCGCTACGTTCGACAAG
AGAGGAGAGGGGAGGCGGGGCTCGAGGCCCCTCCCCAGCCGTTTACGCAC
TGGCTGGAGGACTATAAGAGCGGGATGGAGTTTGAGGTGTACTCGCTGGC
CCTGATCATTCCGCAGACGTCTTTTCTGTGCGGCGCTACGTTCGACAAGG
CGGCGTTGTCGCTGTTCAAGTCATCGAAGGGGGAGGTGCTCCTCATGGCC
GTTGTCCGCGACCTTCGGGACCATCCTGAATACCGACATGCGGCGGCGCG
CGGGGGCGGCGTTGTCGCTGTTCAAGTCATCGAAGGGGGAGGTGCTCCTC
ATGGCCGTTGTCCGCGACCTTCGGGACCATCCTGAATACCGACATGCGGC
GGCGCGCGGGTCTTTCGGGAGCGGAGGCACCGCCAGCAGCCTCGACATGA
ACGGGATTGCCTCTTTCGGGAGCGGAGGCACCGCCAGCAGCCTCGACATG
AACGGGATTGCC
back to top