mRNA_S-dermatodea_contig13384.1989.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13384.1989.1
Unique NamemRNA_S-dermatodea_contig13384.1989.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13384.1989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13384contigS-dermatodea_contig13384:53..426 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924283.5675988-UTR-S-dermatodea_contig13384:52..1171622924283.5675988-UTR-S-dermatodea_contig13384:52..117Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13384 53..117 +
1694079149.571749-UTR-S-dermatodea_contig13384:52..1171694079149.571749-UTR-S-dermatodea_contig13384:52..117Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13384 53..117 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924283.5767796-CDS-S-dermatodea_contig13384:117..4261622924283.5767796-CDS-S-dermatodea_contig13384:117..426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13384 118..426 +
1694079149.595936-CDS-S-dermatodea_contig13384:117..4261694079149.595936-CDS-S-dermatodea_contig13384:117..426Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13384 118..426 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13384.1989.1prot_S-dermatodea_contig13384.1989.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13384 118..426 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13384.1989.1

>prot_S-dermatodea_contig13384.1989.1 ID=prot_S-dermatodea_contig13384.1989.1|Name=mRNA_S-dermatodea_contig13384.1989.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=103bp
MLIYVGRSLTPDRFLIFNTLLHCCSEVGSRANIAVLIPRTLEQVRRSFLS
PMRVASSAGQPTSATANRTLDTESPQYPSPLPEWMHATYIALCLISPPPR
KTK
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mRNA from alignment at S-dermatodea_contig13384:53..426+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13384.1989.1 ID=mRNA_S-dermatodea_contig13384.1989.1|Name=mRNA_S-dermatodea_contig13384.1989.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=374bp|location=Sequence derived from alignment at S-dermatodea_contig13384:53..426+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCAGCCGGTGGGGGGGGGGGAGGGGGGGATATTCTATGTGCGGCTCAAG
CCTCTTCGTTGAGCCATGTTAATTTACGTCGGAAGGAGTTTGACGCCTGA
CCGGTTTTTGATTTTCAATACGCTGCTTCATTGCTGCTCCGAAGTTGGAA
GTCGCGCAAATATCGCAGTCCTGATCCCTCGCACTTTGGAACAAGTACGC
CGTAGTTTCTTGTCTCCTATGAGAGTGGCTTCCTCCGCGGGCCAGCCCAC
GAGCGCCACCGCGAATCGCACTCTCGACACAGAATCTCCACAGTACCCGT
CACCGCTACCGGAGTGGATGCACGCGACGTATATAGCGCTCTGCTTGATT
TCACCCCCCCCCCGCAAAACAAAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13384:53..426+

>mRNA_S-dermatodea_contig13384.1989.1 ID=mRNA_S-dermatodea_contig13384.1989.1|Name=mRNA_S-dermatodea_contig13384.1989.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at S-dermatodea_contig13384:53..426+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTAATTTACGTCGGAAGGAGTTTGACGCCTGACCGGTTTTTGATTTT
CAATACGCTGCTTCATTGCTGCTCCGAAGTTGGAAGTCGCGCAAATATCG
CAGTCCTGATCCCTCGCACTTTGGAACAAGTACGCCGTAGTTTCTTGTCT
CCTATGAGAGTGGCTTCCTCCGCGGGCCAGCCCACGAGCGCCACCGCGAA
TCGCACTCTCGACACAGAATCTCCACAGTACCCGTCACCGCTACCGGAGT
GGATGCACGCGACGTATATAGCGCTCTGCTTGATTTCACCCCCCCCCCGC
AAAACAAAAATGTTAATTTACGTCGGAAGGAGTTTGACGCCTGACCGGTT
TTTGATTTTCAATACGCTGCTTCATTGCTGCTCCGAAGTTGGAAGTCGCG
CAAATATCGCAGTCCTGATCCCTCGCACTTTGGAACAAGTACGCCGTAGT
TTCTTGTCTCCTATGAGAGTGGCTTCCTCCGCGGGCCAGCCCACGAGCGC
CACCGCGAATCGCACTCTCGACACAGAATCTCCACAGTACCCGTCACCGC
TACCGGAGTGGATGCACGCGACGTATATAGCGCTCTGCTTGATTTCACCC
CCCCCCCGCAAAACAAAA
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