mRNA_S-dermatodea_contig13355.1978.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13355.1978.1
Unique NamemRNA_S-dermatodea_contig13355.1978.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Match: A0A6H5LD66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD66_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.580e-29
Identity = 66/86 (76.74%), Postives = 74/86 (86.05%), Query Frame = 1 
Query:    4 KGGAGGAVASPAKPAWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNFGRVTEADVLAALGEAPKGKGSQDAAAGASDEGLALRE 261
            KGGA  A A+PAKPAWTPGPGVVAATPTARALAKKKG++++TV GTGNFGRVTE+DVLA+LGEAPKG  S DA     DEGLA+RE
Sbjct:   56 KGGAA-AAAAPAKPAWTPGPGVVAATPTARALAKKKGVNLATVSGTGNFGRVTESDVLASLGEAPKGNASADA-----DEGLAMRE 135
[Close]
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Match: A0A836C7H2_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7H2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 2.230e-17
Identity = 46/68 (67.65%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   43 PAWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNFGRVTEADVLAALGEAPKGKGSQDAAAGASDEG 246
            PAWTP PGVVAATP A+ALAK KG+DV+T+ GTGNFGRVTEADV+AA G APK   +   AA A+  G
Sbjct:  308 PAWTPAPGVVAATPRAKALAKSKGIDVTTLKGTGNFGRVTEADVMAAAGIAPKKAAAPAPAAVAASSG 375
[Close]
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Match: A0A7S1ZXH6_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZXH6_TRICV)

HSP 1 Score: 78.2 bits (191), Expect = 3.300e-15
Identity = 44/67 (65.67%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   34 PAKPAWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNFGRVTEADVLAALGEAPKGKGSQDAAAGA 234
            PAKP+WTP PGVVAATPTARALAKK  +D++TV GTG FGRVT  DV  A GE    K  +  AAGA
Sbjct:   47 PAKPSWTPAPGVVAATPTARALAKKAKIDLATVVGTGEFGRVTADDVKMATGEKKPEKPKRAGAAGA 113
[Close]
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Match: A0A7S3VCQ0_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCQ0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 4.840e-13
Identity = 44/69 (63.77%), Postives = 50/69 (72.46%), Query Frame = 1 
Query:   28 ASPAKPAWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNFGRVTEADVLAALGEAPKGKGSQDAAAGA 234
            A+PAKPAWTP  GVVAATP ARA AKK  LD++T+ GTG FGRVT  DV  A GE  K +  + AAAGA
Sbjct:  493 AAPAKPAWTPAAGVVAATPMARAAAKKARLDIATIQGTGEFGRVTVDDVQIATGE-KKVERKKAAAAGA 560
[Close]
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Match: A0A1Z5JEH1_FISSO (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JEH1_FISSO)

HSP 1 Score: 72.4 bits (176), Expect = 6.540e-13
Identity = 38/57 (66.67%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:   22 AVASPAKPAWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNFGRVTEADVLAALGE 192
            A A+  KP+WTP  GVVAATPTARALAKK  LD++T+ GTG FGRVT  DVL A G+
Sbjct:  338 AAAASTKPSWTPAAGVVAATPTARALAKKAKLDLATIKGTGEFGRVTADDVLIATGQ 394
[Close]
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Match: A0A7S2DNK3_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DNK3_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 8.860e-13
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:   46 AWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNFGRVTEADVLAALG 189
            A TP PGVVAATP AR L+K KG+D+STV GTGNFGRVTE DVLAALG
Sbjct:  254 AHTPAPGVVAATPMARTLSKAKGVDLSTVAGTGNFGRVTEDDVLAALG 301
[Close]
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Match: A0A7S3DXA0_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DXA0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.270e-12
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:   40 KPAWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNFGRVTEADVLAALGE 192
            KP+WTP PGVVAATPTA+ LAKK  +D+ST+ GTG FGRVT  D+  A GE
Sbjct:  300 KPSWTPAPGVVAATPTAKVLAKKAKIDISTIQGTGQFGRVTADDIKMATGE 350
[Close]
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Match: A0A7S2HQX0_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HQX0_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.940e-12
Identity = 38/57 (66.67%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   22 AVASPAKPAWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNFGRVTEADVLAALGE 192
            A A+PAKPA  P PGV+AATPTAR LAKK  +D+ST+ GTG FGRVT  DV  A GE
Sbjct:  135 APAAPAKPAHIPAPGVIAATPTARVLAKKAKIDLSTIQGTGEFGRVTADDVKIATGE 191
[Close]
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Match: A0A7S4QIL9_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QIL9_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.250e-12
Identity = 37/57 (64.91%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   22 AVASPAKPAWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNFGRVTEADVLAALGE 192
            A A+PAKP   P PGV+AATPTARALAKK  +D+ST+ GTG FGRVT  D+  A GE
Sbjct:  366 APAAPAKPVHIPAPGVIAATPTARALAKKAKIDLSTIQGTGEFGRVTADDIKMATGE 422
[Close]
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Match: K0TPS3_THAOC (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TPS3_THAOC)

HSP 1 Score: 69.3 bits (168), Expect = 7.710e-12
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   28 ASPAKP-------AWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNFGRVTEADVLAALGE 192
            A+P KP       +WTP PGV+AATPTARALAKK  LD++++PGTG FGRVT  DV  A G+
Sbjct:  173 AAPVKPRLCSSTLSWTPAPGVIAATPTARALAKKAKLDLASIPGTGEFGRVTADDVKIATGQ 234
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13355.1978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LD66_9PHAE2.580e-2976.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836C7H2_9STRA2.230e-1767.65Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S1ZXH6_TRICV3.300e-1565.67Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S3VCQ0_9STRA4.840e-1363.77Dihydrolipoamide acetyltransferase component of py... [more]
A0A1Z5JEH1_FISSO6.540e-1366.67Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S2DNK3_9STRA8.860e-1379.17Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S3DXA0_9STRA2.270e-1266.67Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S2HQX0_9STRA2.940e-1266.67Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
A0A7S4QIL9_9STRA4.250e-1264.91Dihydrolipoamide acetyltransferase component of py... [more]
K0TPS3_THAOC7.710e-1259.68Dihydrolipoamide acetyltransferase component of py... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13355contigS-dermatodea_contig13355:4041..5595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue7.7e-10
Seed eggNOG ortholog159749.K0TPS3
KEGG rclassRC00004,RC02742,RC02857
KEGG koko:K00627
KEGG ReactionR00209,R02569
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00307
GOsGO:0000502,GO:0003674,GO:0003824,GO:0004742,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005839,GO:0005840,GO:0005886,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0009941,GO:0009987,GO:0016020,GO:0016407,GO:0016417,GO:0016418,GO:0016740,GO:0016746,GO:0016747,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019773,GO:0019904,GO:0022626,GO:0030523,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046390,GO:0046483,GO:0050896,GO:0051186,GO:0051188,GO:0051704,GO:0051707,GO:0055086,GO:0071616,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0098542,GO:0140096,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1905368,GO:1905369,GO:1990904
EggNOG free text desc.Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex
EggNOG OGs2XAFA@2836,COG0508@1,KOG0557@2759
EC2.3.1.12
COG Functional cat.C
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size266
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.7935836-CDS-S-dermatodea_contig13355:4042..42201622924282.7935836-CDS-S-dermatodea_contig13355:4042..4220Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13355 4043..4220 -
1694079149.013406-CDS-S-dermatodea_contig13355:4042..42201694079149.013406-CDS-S-dermatodea_contig13355:4042..4220Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13355 4043..4220 -
1622924282.809673-CDS-S-dermatodea_contig13355:5509..55951622924282.809673-CDS-S-dermatodea_contig13355:5509..5595Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13355 5510..5595 -
1694079149.0249403-CDS-S-dermatodea_contig13355:5509..55951694079149.0249403-CDS-S-dermatodea_contig13355:5509..5595Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13355 5510..5595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13355.1978.1prot_S-dermatodea_contig13355.1978.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13355 4043..5595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13355.1978.1

>prot_S-dermatodea_contig13355.1978.1 ID=prot_S-dermatodea_contig13355.1978.1|Name=mRNA_S-dermatodea_contig13355.1978.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=88bp
PKGGAGGAVASPAKPAWTPGPGVVAATPTARALAKKKGLDVSTVPGTGNF
GRVTEADVLAALGEAPKGKGSQDAAAGASDEGLALREA
back to top

mRNA from alignment at S-dermatodea_contig13355:4041..5595-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13355.1978.1 ID=mRNA_S-dermatodea_contig13355.1978.1|Name=mRNA_S-dermatodea_contig13355.1978.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1555bp|location=Sequence derived from alignment at S-dermatodea_contig13355:4041..5595- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGAAGGGAGGGGCTGGGGGAGCGGTGGCGTCACCGGCGAAGCCTGCGTG
GACGCCGGGTCCTGGGGTTGTTGCTGCTACTCCGACGTTAGTGTGGTCTT
GTTGTATTCCGTGTTTGGCGTTTTATATGTATGCGATGGTAGTAGGCAGC
CACGGCTACGACCGTGAGGTGCGCGTCTTCTCTAAAATCAAGCAGTGGCT
TCGCAATTTGGCACCAAGGATTGTATCATATTGTTTAGGATTTCAGTTTC
AGAATCGTATCATATAGGATTTGTGTTGTTTGTTCCAACTCTAAATCGCT
GTTACAAATAAAATATCACACTTGACAAAGCGGTAGTGATAAATAAAGAT
AGACCTATACTGGAGAGCTCTATATGTATACTTCGTATATATTTATTTTG
AGCGTGTGTTGTGTACTGTGGTGAGGATGGTGATTGGTAGTGATGGCGAC
GAGGATGGTGAGTATTGTTCGCGAAATTAGTTGTAAGTACGATGGTGGTC
GATGGTCTCCCGTTCGAAGTAACTGATGCGATACGAAATGGAGCCCAGTT
GTTGTGTGATGGCAAGGGAAATACTGTATCGATGGAGCAGAAGAGGGGGA
AATAAACTATTATACGGTACCTGTGTTAAATGGCAGTTCTTTTTTTATCG
CAACTTGGTTGCTCTTTTTGCGAGGGGGTGAACGTTTGCAAAGTTTGCCC
CACCCCTGTTTCGTCCTCTTTCTGTATTTCTTTGCCCCAAGACGTCCCTT
TTCGGTCGCTCCTAATTCGCGGTTGTAGAGGTACTGGTACAAATCAAACA
AGAAGACGGTGGCTTTTGCGATGTAAGACCTATTACGAAGTATTTTATAC
GGCAGGGCTAAAAAAGACCGTGCGGCATCAGTGCCTGCTGACCCAGAGAA
TAACACATTTTTTTCCTCTTTGCCATCACTGTTTTTTTTCAAATCGTGTT
TGCTTCTTCGTCAACCGCCTCGCCCTCCCCACCCCCGTCCCTCTGGTCTA
CTGGTATTGATCGTATTTTAGTGCGTGTCGCGTATCGCGTTCATTACACT
AGCACGTGGGAGCGTGGAGGTGTGTGTGACCATGTATTTTTTCTTCCGAA
TAAGATCCAGAATAATCTCCCCCGATTGCCTCCCTTTCGTGTCACGCTCA
CTGCCTCTCTGTCCAACTACAGCAGCATCGCCCCCGCCCTTCCCCCTATG
GAGCCTGGTACCCTTTTCCTTTTTTCTTTTTCCGACCCCGTGATTTTTTT
GTGTGTCTGTGTGTGTGTGTTTTTTTTATTTTTGTTTTTATATATTCCAC
CGCGTCCTTGCGCGCTGTTCTTCTGTCCGTCTGTCTCATGTGTGTTTGGG
CATTTCGTGCATAATGTTGCTCCAGCGCCCGAGCCCTGGCGAAGAAGAAG
GGACTGGACGTGTCCACCGTGCCGGGCACTGGTAACTTTGGGCGCGTAAC
CGAAGCTGATGTGCTGGCTGCCCTGGGTGAGGCGCCGAAGGGGAAGGGAT
CGCAGGATGCTGCCGCCGGCGCGTCGGATGAGGGCCTGGCCTTGCGTGAG
GCGCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13355:4041..5595-

>mRNA_S-dermatodea_contig13355.1978.1 ID=mRNA_S-dermatodea_contig13355.1978.1|Name=mRNA_S-dermatodea_contig13355.1978.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at S-dermatodea_contig13355:4041..5595- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCGAAGGGAGGGGCTGGGGGAGCGGTGGCGTCACCGGCGAAGCCTGCGTG
GACGCCGGGTCCTGGGGTTGTTGCTGCTACTCCGACCCGAAGGGAGGGGC
TGGGGGAGCGGTGGCGTCACCGGCGAAGCCTGCGTGGACGCCGGGTCCTG
GGGTTGTTGCTGCTACTCCGACCGCCCGAGCCCTGGCGAAGAAGAAGGGA
CTGGACGTGTCCACCGTGCCGGGCACTGGTAACTTTGGGCGCGTAACCGA
AGCTGATGTGCTGGCTGCCCTGGGTGAGGCGCCGAAGGGGAAGGGATCGC
AGGATGCTGCCGCCGGCGCGTCGGATGAGGGCCTGGCCTTGCGTGAGGCG
CGCCCGAGCCCTGGCGAAGAAGAAGGGACTGGACGTGTCCACCGTGCCGG
GCACTGGTAACTTTGGGCGCGTAACCGAAGCTGATGTGCTGGCTGCCCTG
GGTGAGGCGCCGAAGGGGAAGGGATCGCAGGATGCTGCCGCCGGCGCGTC
GGATGAGGGCCTGGCCTTGCGTGAGGCG
back to top