mRNA_S-dermatodea_contig13352.1977.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13352.1977.1
Unique NamemRNA_S-dermatodea_contig13352.1977.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13352.1977.1 vs. uniprot
Match: D7FJI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJI0_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.030e-32
Identity = 68/85 (80.00%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:    1 SERYAPLIKEKKIEKGQRSAWFYRQRPGDSAAEASRRLQKSEDHSLRIRAHLERISLGVKAEEVALKLKEERRVRGKARTRLRYS 255
            SERYAPLIK KKIEKGQRSA F RQR GDSA EASRR+QKSED S++++ H+ERISL VK EEVA +LKEERRVRGKARTRLRYS
Sbjct:  117 SERYAPLIKMKKIEKGQRSAGFCRQRLGDSATEASRRMQKSEDRSIKLKEHMERISLSVKTEEVAARLKEERRVRGKARTRLRYS 201
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13352.1977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJI0_ECTSI3.030e-3280.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13352contigS-dermatodea_contig13352:1959..4317 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size260
Cds size258
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13352.1977.1prot_S-dermatodea_contig13352.1977.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13352 1959..4316 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.7409906-CDS-S-dermatodea_contig13352:1958..20841622924282.7409906-CDS-S-dermatodea_contig13352:1958..2084Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13352 1959..2084 +
1694079148.9779606-CDS-S-dermatodea_contig13352:1958..20841694079148.9779606-CDS-S-dermatodea_contig13352:1958..2084Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13352 1959..2084 +
1622924282.7504716-CDS-S-dermatodea_contig13352:2366..24551622924282.7504716-CDS-S-dermatodea_contig13352:2366..2455Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13352 2367..2455 +
1694079148.987794-CDS-S-dermatodea_contig13352:2366..24551694079148.987794-CDS-S-dermatodea_contig13352:2366..2455Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13352 2367..2455 +
1622924282.763812-CDS-S-dermatodea_contig13352:4273..43161622924282.763812-CDS-S-dermatodea_contig13352:4273..4316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13352 4274..4316 +
1694079149.0009184-CDS-S-dermatodea_contig13352:4273..43161694079149.0009184-CDS-S-dermatodea_contig13352:4273..4316Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13352 4274..4316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13352.1977.1

>prot_S-dermatodea_contig13352.1977.1 ID=prot_S-dermatodea_contig13352.1977.1|Name=mRNA_S-dermatodea_contig13352.1977.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=86bp
SERYAPLIKEKKIEKGQRSAWFYRQRPGDSAAEASRRLQKSEDHSLRIRA
HLERISLGVKAEEVALKLKEERRVRGKARTRLRYSK
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mRNA from alignment at S-dermatodea_contig13352:1959..4317+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13352.1977.1 ID=mRNA_S-dermatodea_contig13352.1977.1|Name=mRNA_S-dermatodea_contig13352.1977.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2359bp|location=Sequence derived from alignment at S-dermatodea_contig13352:1959..4317+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGGAGCGCTACGCGCCCCTGATCAAGGAAAAGAAGATCGAGAAGGGACA
GCGATCGGCCTGGTTTTACCGACAAAGACCCGGTGACTCGGCCGCCGAAG
CCTCTCGTAGGCTACAGAAGAGCGAGGCAAGTCGAGCGCGGTTAGGGCTG
CTTAGGCGATGAAGGGGGGCGGGGGAGGGGGGGGTAGACCCGTCGATAAC
GAAGAGGGTCTGCATTTTAATGGTGAACGGGTTCGTGGCAGTTCTTGCTT
GGGTTACAAATGTAGGTGGCTGAAATACCCGGTGATGGCTGCGGAGCGGG
GGTAGAGCGCGCGCTCGACTTCTTCGCGTGACAGCGACGAAGGGCCTCAT
GCACACACTCGTAATGGAGCGGCCCGTTACGCTGCCGCCCCTGTCCAATC
GTGAACAGGATCATTCGCTAAGGATCAGGGCGCATCTTGAGCGAATATCC
CTAGGTGTCAAGGCGGAAGAAGTCGCCTTGAAGCTGAAGGAGGAAAGGTG
AGGCCAATTGTTCCCAGCATTTCGGTCTTGAAACAAATCCACGTCCTACA
GGTACCGTTTTTGAGTAGGGTGTTTTCGACCTCTCGATGGTCTCATCTGA
CCAATCACGAGCGGGGTCGGCAACCATTGGTAGGCCGGTCGGTTGTAAGC
TTGAAAATGAAATCAACTCAAATCGAATCAAATCAAAGGAAATCAGCTGC
TATGTATAGTAAGTTCGAGTGGCACGTGACGCCGACCGCATCTACTTGAA
GAATTGATTTTGATTGTATTGATTATCGCGCAAGTACAACCGACCGGCCC
GCGTCAATATTTGCACTTTCAAAAATGGCATACCGATCGCGCTCGTGGTC
GCATGAAGGCACAATAGCAAGTGTGATCCAGCACCCCTACAGCGAACATA
TCGCAATCGACGGGTGCAACCTTCTGCAGAGTTCCCGTCAGAATCGTGGA
GTGGAGTGGAAAGCTCCGCGCTTGTTCGCACCGAACCACAACTATGCTGC
CTTGCAACATTGAAGATTGCGGAGCCCACATTTGCTTCGATATTTTCTTC
TGCACGCCGAACATCTAAGCAGGGCCACCCGTGCAAAATGATGCCGCCTC
GTGCTTGGAACTCCGTGCACTTGGCGCTCTAGACGATCGCCACCATACCA
CACGCTTTCGTTCCGGGAAATCAGCACGCCCACCCTCTAGAGCCGGGATG
CAATTTCTTGATTGATTGATTGATTGATTGATTGAGTGATTGGTTGATTT
GCGTACATACACTTGTAGCCGATCGGCGTAGTCCGACCACAACTTGTATT
CAGATGCTTTCGCAAAGAGTCAAAGAGAAAACCTCTAATCAGATATTTAC
TTGTACCATACACGGCAGTACCGTCACTGGTACATACTTCCTATGGCACA
AGAGAGAGGAAGTGTATACCAGTTCGACCTGATTGATTGATTGATTGGTT
GAGTGATTTATTGTTTTTCATACGTATAGCCGATCGGGTTGATCCGACCG
GACTTGTAGCCAGATGCGCAAAGAGTCGAGGAGAAAATAACTATAATAGT
CAGAATACTACTTCTTCAACACCGTACCGTCCCTGGTACTTACTATGGTA
CAAGAAAGAAGTCATACTTCGAAGTAAGTAGTACCCCAGATATAAGAGAA
AATGGTAAAAGAGGACTCGGAATCGGACAATGCTCCCTCTCCTCTCCACC
CGTATATTAGTTTGCCCCCCTACAACTTGCAGACTCTGCAGGTGGGCATA
ATATGTAGAAATAAGAACTGAGCTACACAATAGTAGTGAGGACCAAATGT
GCCAAAGACGTGCACATACCCAACATGATAAACCAGAAATAATTTAGTCT
GGCCTTACTGTACAAGACCTGCAAAATATTTCGGCCTGAAACGCCAAATC
AAAAACTAAAAATGTCTTACTTCGTATATATGTATATCCGTAGTTTGTTT
TTCGATCTCTCGCTTTCTTTCTCATCTGACCACGAGCGGGATCGGCAACC
ATTCGTGGGCCGGTCGGCTGTAGTTGTGACAACCAATAAATCAAATCAAT
CAAATACGAGGTGTTCGGGCCATTATTAACTTTTAAAAAACCATACTTGA
ATACGCTATCGAGCAGACATGTTGTCCTGATTGCTATTATACTGATAACT
GTGTACCTCCGGAATACATGTGTGGCATGCCCAACTCCCTTGATTCGGAC
TCCGTCTTGTCATCGACCCAATTCGCCCATCCTATGGGTACGTCCCCCCT
CGTCCGTTCAATCTAACTACTGGCCGTATTCCTCTTTTACCGGCATCTTG
TTGCCCTGGAATCAGGCGCGTGCGCGGAAAGGCACGTACGCGACTCCGCT
ACAGCAAAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13352:1959..4317+

>mRNA_S-dermatodea_contig13352.1977.1 ID=mRNA_S-dermatodea_contig13352.1977.1|Name=mRNA_S-dermatodea_contig13352.1977.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=516bp|location=Sequence derived from alignment at S-dermatodea_contig13352:1959..4317+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGGAGCGCTACGCGCCCCTGATCAAGGAAAAGAAGATCGAGAAGGGACA
GCGATCGGCCTGGTTTTACCGACAAAGACCCGGTGACTCGGCCGCCGAAG
CCTCTCGTAGGCTACAGAAGAGCGAGTCGGAGCGCTACGCGCCCCTGATC
AAGGAAAAGAAGATCGAGAAGGGACAGCGATCGGCCTGGTTTTACCGACA
AAGACCCGGTGACTCGGCCGCCGAAGCCTCTCGTAGGCTACAGAAGAGCG
AGGATCATTCGCTAAGGATCAGGGCGCATCTTGAGCGAATATCCCTAGGT
GTCAAGGCGGAAGAAGTCGCCTTGAAGCTGAAGGAGGAAAGGATCATTCG
CTAAGGATCAGGGCGCATCTTGAGCGAATATCCCTAGGTGTCAAGGCGGA
AGAAGTCGCCTTGAAGCTGAAGGAGGAAAGGCGCGTGCGCGGAAAGGCAC
GTACGCGACTCCGCTACAGCAAAGCGCGTGCGCGGAAAGGCACGTACGCG
ACTCCGCTACAGCAAA
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