mRNA_S-dermatodea_contig13337.1976.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13337.1976.1
Unique NamemRNA_S-dermatodea_contig13337.1976.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Match: D7FQZ3_ECTSI (Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQZ3_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.690e-30
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGSGYKFMGDMVLEVDKLNPQVT 210
            QA+ADLPDLL RVK LM+HE FTLKNPNRLRSVVSSFA  Q+KFHAKDGSGY+F+GDMVLEVD+LNPQV 
Sbjct:  934 QAAADLPDLLSRVKDLMQHEDFTLKNPNRLRSVVSSFAGSQHKFHAKDGSGYEFLGDMVLEVDQLNPQVA 1003
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BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Match: A0A6H5KYN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYN1_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 4.250e-30
Identity = 57/70 (81.43%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGSGYKFMGDMVLEVDKLNPQVT 210
            QA+ADLPDLL RVK LM+HE FTLKNPNRLRSVVSSFA  Q+KFHAKDGSGY+F+GDMVLEVD+LNPQ +
Sbjct:  726 QAAADLPDLLSRVKDLMQHEDFTLKNPNRLRSVVSSFAGSQHKFHAKDGSGYEFLGDMVLEVDQLNPQAS 795
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BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Match: A0A7S2D2B0_9DINO (Hypothetical protein n=1 Tax=Alexandrium andersonii TaxID=327968 RepID=A0A7S2D2B0_9DINO)

HSP 1 Score: 97.4 bits (241), Expect = 2.230e-24
Identity = 49/75 (65.33%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGSGYKFMGDMVLEVDKLNPQVTRQEGL 225
            QA+AD+ D LPRV+ LM H  FTLKNPNRLRSVVS F      FH  DGSGYKFM + VLEVDKLNPQV  +  L
Sbjct:    9 QAAADVEDALPRVQTLMEHPDFTLKNPNRLRSVVSVFGGNTLGFHKADGSGYKFMAETVLEVDKLNPQVASRLAL 83
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BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Match: A0A7S3HAB8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAB8_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 7.150e-23
Identity = 48/75 (64.00%), Postives = 53/75 (70.67%), Query Frame = 1 
Query:    1 QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGSGYKFMGDMVLEVDKLNPQVTRQEGL 225
            QA AD+PD L RV++LM H  FTLKNPNRLRSVVS F      FH  DG+GY FM  MVLEVDKLNPQV  +  L
Sbjct:   31 QAGADVPDGLARVQRLMEHPDFTLKNPNRLRSVVSVFGGNVANFHKIDGTGYAFMTKMVLEVDKLNPQVASRMAL 105
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BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Match: A0A7S2V441_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V441_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.730e-21
Identity = 44/70 (62.86%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGSGYKFMGDMVLEVDKLNPQVT 210
            QASAD  D+L  V+ LM+H  FTLKNPNRLRSV++ FA+    FHA+DGSGY F+GD +LE+D+LNPQV 
Sbjct:  332 QASADREDILEEVRSLMKHPDFTLKNPNRLRSVINVFATNLPYFHAEDGSGYNFIGDCILEIDQLNPQVA 401
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BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Match: A0A835ZE57_9STRA (Aminopeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE57_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.900e-21
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGSGYKFMGDMVLEVDKLNPQVT 210
            QAS+DLPD+L RVK L+ H  FTLKNPNRLRS+VS FA+   KFHAK G+ Y F+GDM L+VD++N QV 
Sbjct:  890 QASSDLPDVLDRVKALVSHPDFTLKNPNRLRSLVSVFAANMTKFHAKSGAAYAFLGDMCLQVDQINAQVA 959
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BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Match: A0A7S3DPM5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DPM5_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.680e-21
Identity = 40/70 (57.14%), Postives = 56/70 (80.00%), Query Frame = 1 
Query:    1 QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGSGYKFMGDMVLEVDKLNPQVT 210
            QA ADLPD+L RVK+L  H  FTLKNPNRLRS+VS+F      FH ++G+GY+F+GD++ +VD++NPQ++
Sbjct:   43 QALADLPDVLDRVKKLTEHPDFTLKNPNRLRSLVSAFTMNSAAFHDEEGAGYEFIGDILEQVDQINPQIS 112
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BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Match: B8LCH3_THAPS (Aminopeptidase aminopeptidase-like protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LCH3_THAPS)

HSP 1 Score: 94.4 bits (233), Expect = 8.970e-21
Identity = 44/74 (59.46%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:    1 QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGSGYKFMGDMVLEVDKLNPQVTRQEG 222
            QA ADLPD+L RVK L+ H +FTL NPNR RS++S+F+     FHA +G GYKF+GDMV +VDKLNPQ++ + G
Sbjct:  770 QALADLPDVLDRVKALVDHPEFTLSNPNRCRSLISAFSMNAAHFHAINGDGYKFIGDMVAQVDKLNPQMSSRMG 843
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BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Match: A0A7S0A274_9DINO (Hypothetical protein n=2 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0A274_9DINO)

HSP 1 Score: 90.5 bits (223), Expect = 2.380e-20
Identity = 45/75 (60.00%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:    1 QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGSGYKFMGDMVLEVDKLNPQVTRQEGL 225
            QA  D+ D LPRV++L+ H  FT KNPNRLRSV+S FAS    FH  DGSGY FM   VL VDKLNPQV  +  L
Sbjct:  143 QAGVDVDDALPRVEKLLEHPDFTFKNPNRLRSVMSVFASNVRGFHKADGSGYAFMAKTVLTVDKLNPQVASRLAL 217
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BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Match: A0A7S2QAG2_9DINO (Hypothetical protein n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2QAG2_9DINO)

HSP 1 Score: 91.3 bits (225), Expect = 1.080e-19
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:    1 QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGSGYKFMGDMVLEVDKLNPQVTRQEGL 225
            QA+AD+PD+L RV++L+ H  FT  NPNRLRSVVS FA     FH  DGSGY FM + VL+VDKLNPQV  +  L
Sbjct:  785 QAAADVPDILARVEKLIAHPDFTFTNPNRLRSVVSVFAGNVTGFHNADGSGYAFMREQVLKVDKLNPQVASRLAL 859
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13337.1976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQZ3_ECTSI1.690e-3082.86Aminopeptidase n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KYN1_9PHAE4.250e-3081.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2D2B0_9DINO2.230e-2465.33Hypothetical protein n=1 Tax=Alexandrium andersoni... [more]
A0A7S3HAB8_9STRA7.150e-2364.00Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2V441_9STRA1.730e-2162.86Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZE57_9STRA1.900e-2164.29Aminopeptidase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A7S3DPM5_9STRA2.680e-2157.14Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
B8LCH3_THAPS8.970e-2159.46Aminopeptidase aminopeptidase-like protein (Fragme... [more]
A0A7S0A274_9DINO2.380e-2060.00Hypothetical protein n=2 Tax=Pyrodinium bahamense ... [more]
A0A7S2QAG2_9DINO1.080e-1960.00Hypothetical protein n=2 Tax=Brandtodinium nutricu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13337contigS-dermatodea_contig13337:141..377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.9
Seed ortholog evalue6.9e-26
Seed eggNOG ortholog2880.D7FQZ3
KEGG rclassRC00096,RC00141
KEGG koko:K01256,ko:K13725
KEGG ReactionR00899,R04951
KEGG Pathwayko00480,ko01100,map00480,map01100
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008270,GO:0009056,GO:0009987,GO:0016787,GO:0019538,GO:0033218,GO:0034641,GO:0042277,GO:0043167,GO:0043169,GO:0043170,GO:0043171,GO:0043603,GO:0044237,GO:0044238,GO:0044248,GO:0044424,GO:0044464,GO:0046872,GO:0046914,GO:0070006,GO:0070011,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.metalloaminopeptidase activity
EggNOG OGsCOG0308@1,KOG1046@2759
Ec32 ortholog descriptionaminopeptidase
Ec32 orthologEc-09_003180.1
EC3.4.11.2
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Hectar predicted targeting categoryother localisation
Exons1
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.709622-CDS-S-dermatodea_contig13337:140..3771622924282.709622-CDS-S-dermatodea_contig13337:140..377Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13337 141..377 +
1694079148.9640384-CDS-S-dermatodea_contig13337:140..3771694079148.9640384-CDS-S-dermatodea_contig13337:140..377Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13337 141..377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13337.1976.1prot_S-dermatodea_contig13337.1976.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13337 141..377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13337.1976.1

>prot_S-dermatodea_contig13337.1976.1 ID=prot_S-dermatodea_contig13337.1976.1|Name=mRNA_S-dermatodea_contig13337.1976.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=79bp
QASADLPDLLPRVKQLMRHEKFTLKNPNRLRSVVSSFASCQNKFHAKDGS
GYKFMGDMVLEVDKLNPQVTRQEGLGGY*
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mRNA from alignment at S-dermatodea_contig13337:141..377+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13337.1976.1 ID=mRNA_S-dermatodea_contig13337.1976.1|Name=mRNA_S-dermatodea_contig13337.1976.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=237bp|location=Sequence derived from alignment at S-dermatodea_contig13337:141..377+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGTCGGCAGATCTCCCGGATTTGTTGCCTCGCGTCAAGCAGCTGAT
GCGGCACGAGAAGTTCACCCTCAAGAACCCGAACCGCCTGCGATCCGTAG
TGTCCTCCTTCGCGAGCTGCCAGAACAAGTTCCACGCCAAGGACGGGTCG
GGGTACAAGTTCATGGGAGACATGGTGTTGGAGGTGGACAAGCTTAACCC
GCAGGTGACGAGACAAGAGGGGCTGGGGGGGTACTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13337:141..377+

>mRNA_S-dermatodea_contig13337.1976.1 ID=mRNA_S-dermatodea_contig13337.1976.1|Name=mRNA_S-dermatodea_contig13337.1976.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at S-dermatodea_contig13337:141..377+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGCGTCGGCAGATCTCCCGGATTTGTTGCCTCGCGTCAAGCAGCTGAT
GCGGCACGAGAAGTTCACCCTCAAGAACCCGAACCGCCTGCGATCCGTAG
TGTCCTCCTTCGCGAGCTGCCAGAACAAGTTCCACGCCAAGGACGGGTCG
GGGTACAAGTTCATGGGAGACATGGTGTTGGAGGTGGACAAGCTTAACCC
GCAGGTGACGAGACAAGAGGGGCTGGGGGGGTACTAACAGGCGTCGGCAG
ATCTCCCGGATTTGTTGCCTCGCGTCAAGCAGCTGATGCGGCACGAGAAG
TTCACCCTCAAGAACCCGAACCGCCTGCGATCCGTAGTGTCCTCCTTCGC
GAGCTGCCAGAACAAGTTCCACGCCAAGGACGGGTCGGGGTACAAGTTCA
TGGGAGACATGGTGTTGGAGGTGGACAAGCTTAACCCGCAGGTGACGAGA
CAAGAGGGGCTGGGGGGGTACTAA
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