mRNA_S-dermatodea_contig13332.1975.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13332.1975.1
Unique NamemRNA_S-dermatodea_contig13332.1975.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13332.1975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13332contigS-dermatodea_contig13332:4991..6315 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size585
Cds size288
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13332.1975.1prot_S-dermatodea_contig13332.1975.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13332 5693..6315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.6331284-UTR-S-dermatodea_contig13332:4990..51101622924282.6331284-UTR-S-dermatodea_contig13332:4990..5110Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13332 4991..5110 +
1694079148.9065878-UTR-S-dermatodea_contig13332:4990..51101694079148.9065878-UTR-S-dermatodea_contig13332:4990..5110Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13332 4991..5110 +
1622924282.6430523-UTR-S-dermatodea_contig13332:5302..54181622924282.6430523-UTR-S-dermatodea_contig13332:5302..5418Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13332 5303..5418 +
1694079148.9154158-UTR-S-dermatodea_contig13332:5302..54181694079148.9154158-UTR-S-dermatodea_contig13332:5302..5418Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13332 5303..5418 +
1622924282.6549-UTR-S-dermatodea_contig13332:5631..56921622924282.6549-UTR-S-dermatodea_contig13332:5631..5692Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13332 5632..5692 +
1694079148.9316576-UTR-S-dermatodea_contig13332:5631..56921694079148.9316576-UTR-S-dermatodea_contig13332:5631..5692Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13332 5632..5692 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.6680903-CDS-S-dermatodea_contig13332:5692..58961622924282.6680903-CDS-S-dermatodea_contig13332:5692..5896Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13332 5693..5896 +
1694079148.9426093-CDS-S-dermatodea_contig13332:5692..58961694079148.9426093-CDS-S-dermatodea_contig13332:5692..5896Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13332 5693..5896 +
1622924282.680481-CDS-S-dermatodea_contig13332:6231..63151622924282.680481-CDS-S-dermatodea_contig13332:6231..6315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13332 6232..6315 +
1694079148.9526744-CDS-S-dermatodea_contig13332:6231..63151694079148.9526744-CDS-S-dermatodea_contig13332:6231..6315Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13332 6232..6315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13332.1975.1

>prot_S-dermatodea_contig13332.1975.1 ID=prot_S-dermatodea_contig13332.1975.1|Name=mRNA_S-dermatodea_contig13332.1975.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=96bp
MNLLTKEYYPLKASPVQVMQWAIQARDFVPHPSWITPTGAQGMPSLKATS
LWIALTSPESITRSDIYNIFYDTGPASSNLAWDMADRAFLDMSADA
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mRNA from alignment at S-dermatodea_contig13332:4991..6315+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13332.1975.1 ID=mRNA_S-dermatodea_contig13332.1975.1|Name=mRNA_S-dermatodea_contig13332.1975.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1325bp|location=Sequence derived from alignment at S-dermatodea_contig13332:4991..6315+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTCACAGTACACCGCCCAAAAACATCAAGATTTTCCGTGAAGATCTGCGG
AAGCTGTGCAATCTTCAAGGGGCTAAAATAACCGTGAAGATGCTTGACGA
GAGAACCTAGACTTTCGAGCGTGAGTGCCGTCTCTTCGAAAGAGGCGTGT
CTTCCTATTTTTACTCGTGTCCTTCTGCCTTTTGGTCTTCCCCGCACTTT
ATTTCCCCGCACTTTATTTTATTCCTCTTATTGTTGTCTGTCTGTTGTTC
TTAACAACGCCGTTCCTTCTCTTCCTCCTCCATATCTGCCTTTACTTTGC
GTTTGTGCGCAGTTATGTGCGGATACACACAGAAGGATAAGGGTAAGGCA
TGGCACGAGTTCGAGTCCGTAGGCTTATCGGCGGAGTTCTGCCAAAATCG
CAGCCTTGAACTACCAACGCACAGCCTCGTGAGTTCGACTAATCTTCTCC
GCTGGTTTCGTTCCTTCTCTCCACATAGACGTCCTTGATCTTGATCTTAC
CGGTTTGTCATTGTCGTCTTCACGTGCTGCACTCGTCGTCAAACTGCATG
CGTGCTGCATCCCTCCCATACCGCTTGCCATATTCATTAAACCTTTACCC
TGCTTGTCCTTACCTGTGCTTGCGCGGTGCGATCCCTCCAGGGGCGTCGT
GAAGAACGACACCCGAATCGACGTGACCAAGAAGAGCCACTGGGGTGTCG
TCATGAATCTCCTGACCAAGGAGTACTACCCTTTGAAGGCTTCTCCGGTC
CAGGTCATGCAATGGGCCATCCAAGCACGGGACTTCGTGCCACATCCTAG
CTGGATCACACCTACCGGCGCGCAGGGAATGCCCTCCCTGAAAGCTACCT
CCCTGTGGATTGCGCTCACGTCCCCGGAATCGATAACGCGGTCTGATATA
TACAACGTAAGTGCTCTTCTTTGCGGAGTTTGTGCTGCGCACTCTTTCTT
CTCTTCCTTCTTGGCCTCATCTGCCGTTTTTTCCTTTGTTCATTATAGCC
TCCGTTGTGTACGCTCAGCTTTATTGTCTCGTGTTTAACGTGCGACTCCG
TGGTCGTCACTTCCGACTTTGCCGCTTCATCTTCTCTTTTGTTTGTTGCC
TTCTTCTTTTTGTATACATACATGTGCGTTTTGCGTGTATCACGCCCGCT
GAGTAATCGCCAACACTCCTCTGTCTCACACCTCCCATTATCTCCACCGC
CTTCCCTATATCTCCTCTGATTGATTATCGGCAATGCACAGATCTTCTAC
GACACTGGCCCTGCGTCGTCGAACCTCGCGTGGGACATGGCTGACCGGGC
GTTCCTAGACATGAGCGCTGATGCT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13332:4991..6315+

>mRNA_S-dermatodea_contig13332.1975.1 ID=mRNA_S-dermatodea_contig13332.1975.1|Name=mRNA_S-dermatodea_contig13332.1975.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at S-dermatodea_contig13332:4991..6315+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAATCTCCTGACCAAGGAGTACTACCCTTTGAAGGCTTCTCCGGTCCA
GGTCATGCAATGGGCCATCCAAGCACGGGACTTCGTGCCACATCCTAGCT
GGATCACACCTACCGGCGCGCAGGGAATGCCCTCCCTGAAAGCTACCTCC
CTGTGGATTGCGCTCACGTCCCCGGAATCGATAACGCGGTCTGATATATA
CAACATGAATCTCCTGACCAAGGAGTACTACCCTTTGAAGGCTTCTCCGG
TCCAGGTCATGCAATGGGCCATCCAAGCACGGGACTTCGTGCCACATCCT
AGCTGGATCACACCTACCGGCGCGCAGGGAATGCCCTCCCTGAAAGCTAC
CTCCCTGTGGATTGCGCTCACGTCCCCGGAATCGATAACGCGGTCTGATA
TATACAACATCTTCTACGACACTGGCCCTGCGTCGTCGAACCTCGCGTGG
GACATGGCTGACCGGGCGTTCCTAGACATGAGCGCTGATGCTATCTTCTA
CGACACTGGCCCTGCGTCGTCGAACCTCGCGTGGGACATGGCTGACCGGG
CGTTCCTAGACATGAGCGCTGATGCT
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