mRNA_S-dermatodea_contig1333.1973.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1333.1973.1
Unique NamemRNA_S-dermatodea_contig1333.1973.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1333.1973.1 vs. uniprot
Match: D7FZQ4_ECTSI (Helicase ATP-binding domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZQ4_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 8.200e-39
Identity = 67/76 (88.16%), Postives = 70/76 (92.11%), Query Frame = -1 
Query:   73 GGGEQRASGSGGAIQSNIKKDERFDVRWEGMPFKHRKIGRGPKATYEKVCIMPLWLRNLWPTSDFDPCAVWEQAKE 300
            GGGEQ+A      +QSNIKKDERFDVRWEGMPFKHRKIGRGPKATYEKVCIMPLWLRNLWPTS+FDPCAVWEQAKE
Sbjct:   12 GGGEQKA------VQSNIKKDERFDVRWEGMPFKHRKIGRGPKATYEKVCIMPLWLRNLWPTSEFDPCAVWEQAKE 81
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1333.1973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZQ4_ECTSI8.200e-3988.16Helicase ATP-binding domain-containing protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1333contigS-dermatodea_contig1333:8267..8603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size338
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.5645335-CDS-S-dermatodea_contig1333:8266..86021622924282.5645335-CDS-S-dermatodea_contig1333:8266..8602Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1333 8267..8602 +
1694079148.8610485-CDS-S-dermatodea_contig1333:8266..86021694079148.8610485-CDS-S-dermatodea_contig1333:8266..8602Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1333 8267..8602 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1333.1973.1prot_S-dermatodea_contig1333.1973.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1333 8267..8602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1333.1973.1

>prot_S-dermatodea_contig1333.1973.1 ID=prot_S-dermatodea_contig1333.1973.1|Name=mRNA_S-dermatodea_contig1333.1973.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=112bp
PTLGLGRLGARLGGLLPHGLLGLVLLGLLPHSARVEVRRGPQVAEPEGHD
ADLLVGRLGAAPYLAMLERHTLPAHIEPLVLLDVALDGTAAAGGSLLSPA
AGGILGGVRHGH
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mRNA from alignment at S-dermatodea_contig1333:8267..8603+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1333.1973.1 ID=mRNA_S-dermatodea_contig1333.1973.1|Name=mRNA_S-dermatodea_contig1333.1973.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=337bp|location=Sequence derived from alignment at S-dermatodea_contig1333:8267..8603+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCACTCTTGGCCTTGGTAGACTTGGCGCTCGCCTTGGCGGCCTTCTCCC
TCACGGCCTCCTCGGCCTCGTCCTCCTTGGCCTGCTCCCACACAGCGCAA
GGGTCGAAGTCCGACGTGGGCCACAGGTTGCGGAGCCAGAGGGGCATGAT
GCAGACCTTCTCGTAGGTCGCCTTGGGGCCGCGCCCTATCTTGCGATGCT
TGAACGGCATACCCTCCCAGCGCACATCGAACCTCTCGTCCTTCTTGATG
TTGCTCTGGATGGCACCGCCGCTGCCGGAGGCTCGCTGCTCTCCCCCGCC
GCCGGGGGGATCCTGGGTGGCGTTCGACATGGTCACG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1333:8267..8603+

>mRNA_S-dermatodea_contig1333.1973.1 ID=mRNA_S-dermatodea_contig1333.1973.1|Name=mRNA_S-dermatodea_contig1333.1973.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at S-dermatodea_contig1333:8267..8603+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCACTCTTGGCCTTGGTAGACTTGGCGCTCGCCTTGGCGGCCTTCTCCC
TCACGGCCTCCTCGGCCTCGTCCTCCTTGGCCTGCTCCCACACAGCGCAA
GGGTCGAAGTCCGACGTGGGCCACAGGTTGCGGAGCCAGAGGGGCATGAT
GCAGACCTTCTCGTAGGTCGCCTTGGGGCCGCGCCCTATCTTGCGATGCT
TGAACGGCATACCCTCCCAGCGCACATCGAACCTCTCGTCCTTCTTGATG
TTGCTCTGGATGGCACCGCCGCTGCCGGAGGCTCGCTGCTCTCCCCCGCC
GCCGGGGGGATCCTGGGTGGCGTTCGACATGGTCACCCCACTCTTGGCCT
TGGTAGACTTGGCGCTCGCCTTGGCGGCCTTCTCCCTCACGGCCTCCTCG
GCCTCGTCCTCCTTGGCCTGCTCCCACACAGCGCAAGGGTCGAAGTCCGA
CGTGGGCCACAGGTTGCGGAGCCAGAGGGGCATGATGCAGACCTTCTCGT
AGGTCGCCTTGGGGCCGCGCCCTATCTTGCGATGCTTGAACGGCATACCC
TCCCAGCGCACATCGAACCTCTCGTCCTTCTTGATGTTGCTCTGGATGGC
ACCGCCGCTGCCGGAGGCTCGCTGCTCTCCCCCGCCGCCGGGGGGATCCT
GGGTGGCGTTCGACATGGTCAC
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