mRNA_S-dermatodea_contig13328.1972.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13328.1972.1
Unique NamemRNA_S-dermatodea_contig13328.1972.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13328.1972.1 vs. uniprot
Match: D8LQI7_ECTSI (BIG1, ArfGEF protein of the BIG/GBF family n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQI7_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.520e-48
Identity = 85/105 (80.95%), Postives = 94/105 (89.52%), Query Frame = 1 
Query:    1 QERLVQACKCVVLAYADREEHAMGLELSLPGLDHSALVEEVKETTALAILALRSMMHICEDQVRSNVPWMYGSMTRLVRCNSDAVRHHVQQVLIHKMGPAMMPKS 315
            Q  LVQACKCVVLAYADREEHAMGLEL+LPGLDHSALVEEVK+TT L I AL SMM+I E+QVR NV WMYG MTRLVRCNS+ VRHHVQQ+LI+KMGPAM+P+S
Sbjct: 2069 QACLVQACKCVVLAYADREEHAMGLELTLPGLDHSALVEEVKQTTPLVIFALGSMMYISEEQVRLNVGWMYGCMTRLVRCNSEEVRHHVQQILIYKMGPAMVPQS 2173
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13328.1972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQI7_ECTSI1.520e-4880.95BIG1, ArfGEF protein of the BIG/GBF family n=2 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13328contigS-dermatodea_contig13328:3346..6134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue4.9e-30
Seed eggNOG ortholog2880.D8LQI7
KEGG koko:K18442
KEGG Pathwayko04144,map04144
EggNOG free text desc.regulation of ARF protein signal transduction
EggNOG OGsCOG5307@1,KOG0929@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size252
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13328.1972.1prot_S-dermatodea_contig13328.1972.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13328 3358..6068 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.5000794-UTR-S-dermatodea_contig13328:3345..33571622924282.5000794-UTR-S-dermatodea_contig13328:3345..3357Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13328 3346..3357 -
1694079148.8237996-UTR-S-dermatodea_contig13328:3345..33571694079148.8237996-UTR-S-dermatodea_contig13328:3345..3357Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13328 3346..3357 -
1622924282.537478-UTR-S-dermatodea_contig13328:6068..61341622924282.537478-UTR-S-dermatodea_contig13328:6068..6134Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13328 6069..6134 -
1694079148.851952-UTR-S-dermatodea_contig13328:6068..61341694079148.851952-UTR-S-dermatodea_contig13328:6068..6134Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13328 6069..6134 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.5123622-CDS-S-dermatodea_contig13328:3357..34891622924282.5123622-CDS-S-dermatodea_contig13328:3357..3489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13328 3358..3489 -
1694079148.834268-CDS-S-dermatodea_contig13328:3357..34891694079148.834268-CDS-S-dermatodea_contig13328:3357..3489Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13328 3358..3489 -
1622924282.5274024-CDS-S-dermatodea_contig13328:5948..60681622924282.5274024-CDS-S-dermatodea_contig13328:5948..6068Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13328 5949..6068 -
1694079148.8428988-CDS-S-dermatodea_contig13328:5948..60681694079148.8428988-CDS-S-dermatodea_contig13328:5948..6068Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13328 5949..6068 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13328.1972.1

>prot_S-dermatodea_contig13328.1972.1 ID=prot_S-dermatodea_contig13328.1972.1|Name=mRNA_S-dermatodea_contig13328.1972.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=84bp
MGLELSLPGLDHSALVEEVKETTALAILALRSMMHICEDQVRSNVPWMYG
SMTRLVRCNSDAVRHHVQQVLIHKMGPAMMPKS*
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mRNA from alignment at S-dermatodea_contig13328:3346..6134-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13328.1972.1 ID=mRNA_S-dermatodea_contig13328.1972.1|Name=mRNA_S-dermatodea_contig13328.1972.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2789bp|location=Sequence derived from alignment at S-dermatodea_contig13328:3346..6134- (Saccorhiza dermatodea SderLu1190fm monoicous)
CAGGAGCGCCTCGTCCAGGCGTGCAAGTGCGTGGTCCTGGCCTACGCCGA
CCGAGAGGAACATGCGATGGGGCTGGAGCTGAGCCTGCCCGGGTTGGACC
ATTCGGCACTCGTGGAGGAGGTGAAGGAGACCACCGCCCTCGCCATCCTT
GCGCTGAGGAGCATGATGCATATCTGCGAGGACCAGGCGAGTGTTTTTTT
TTCTTCTTTTTTTTTCATCTCTCTCTCTTAGACGAGGAGGAACAGGAAGA
GTAGGAGGAGCGCCTTTTGTGTATGTGCAGTTTCTGGACCTCAAGCGTGG
TTCCCTGAAGACAGTATAATAATTATTTATGAACACATAACTACTGTATA
CTGTATCGCATTGGGGTCCAACCAACCAACCAACCAATATTTGTGGTATT
AATAGAGGAAAATAAAGAAGATGGCCCAATCTAACTTAACTATTAATAAC
TAACTCTCAGTGGAAGACTAAGACTAAGACTACATTATGTACGATGCTAT
CGTGTCACATTAACCCGTTTGGTACTAGCCCCTAATACTAATACTAATAC
TAATACTAATACTGTTTGGAGCGCCTGTTAGCACGTAATGAGGCGTGCTT
GGAGCGGGGCCCTGGGGAACTCCATGGGTTATGACTTCGCAGGAATGAGA
GAGAACGGAGCGCAAGGGAAACGGGGCTGTAGCTGTCGACTGGCATCGAA
AAGTAGTTTTTGGTCATTTCGGAGAGCCCTATTTATACTATAATAATAAA
GTAAAATAAATACTATTACCAAAAGGGTTAAAGTGTTGTTCTCCCTCCCT
CAAACAATGAAGGTTTGACATTTCTAAACACAGAGCGAGCATTACTGTCG
GCATAGGTACAGTATTTATAGAGTACTTGTATTTTTCGATCTCATGATTT
ATCATCTGACCACGACCGGGATCGGCAACCACTATTATATTATAGTTGGC
CGGTCGGCTGTATGCTGTATGTATGTATGTATATGTATGTGTGATAGTCA
AGCAATCAATTCAAAACCAAACTGATGTACCAGTACGTGTTAGTTAGTAC
TGAGATCCAACGTCGGTGCTTACATTGACACGATACATATTCAGGCACTC
AGCATACTGTATTACAACAGCGGAACCTTAGGGACCCCAATCTTTTTTGA
GAGGAAAATATGAAAATATGGCCCAGGCTAAATCGGTGGAGGTGTACACG
TTATGTACGACGCTGTGGGGATATTTTCTAATAGGAACGCTACCTACAGT
ACAATTAAAGCGTCACTCTGGGAATAGAGTGTTTGCAGTTGTTGGATGCT
GTGTGCGGGCGTGATCCCCCTAAAATAATTAAGATTTCAGAAACATAGAG
CAAGCATTGGGGTCCCACCTTTTCAAGAGGGAAGATGATCCAGGCTACAC
CTATGGAGGCTCACTTGTTACATATGATGCTACTAATGTGGTGTCGTCGT
ATCAGGTATGATGTTATATGGTTATGTTGTCATACAGTACATTAGTCTTT
GTCCTGAGGTATGTCCTGGTGATGTATCTTTGCTGCGTTTTTATGAGCAA
ATAATGTTAAATGTTTATTTCCTACCACATACATTAATAGTACTTTTCTC
TTATTTCTTATCTTGATTCAGCCTTTCTGTTCGATTTTTTCTTTGGTAGG
TTTTACACAGTGATCCCCCCCCCCTCGAACGTTAAAATTCTTTCAAAAAC
ATAAAAGTGAGCGGTGGGGTCCCCCACCGTTTTAAAGGAAGAACATATTG
TCCAAGCTACGCCTTGCGGAGGCTGGCTCAGGTTACGTATGATGCTTCTT
ATAGGGTGTTATGTGATGTGGTACGCTATGGGATCATTTGTTAAAATGGT
TTTGCTTGGGCGATGTCTTGGTGTGATTGAGGGTTGTAACTCTAATGTGC
TTTGTGACCCCCCTGAAGACAGTATAATAAAATATATATGAAGACAGAAC
TAGGATTGGTGTCCAACCAATATTTGTGGTATTAATAGAGGAAAATAAAT
AAGATGGCCCAATCTAACTATTAATAACTAACTCTCAGTGGAAGACTAAG
ACTAAGACTACATTATATACGATGCTATCGATGCTATCGTGTCATATTAT
AATCCGGAGGTAACTCTATTAATAGGAATTGGTTGTTTTTCTACTTGTGA
TAATTTTCGTCAAGTTGTATTCGAGCCTGTACTACCCACCACTTTTTGCG
CATCCGTTAGTTTTCGAACCTTTTCTGCCCGTCCTTACTCCTAGGAGGTA
CACTGTAATCAAGTAATAAAGTAATAAAGTAATCAGGACCAAATCTCATG
ATCATCAATACTAATACTAATACAATACCCAACTATTCAACTATTTCGAC
CATGAATACCCAACAACAAAATACCACGAAAAGGAAAGGAGACACGAGAT
ATGGCCATACACAAGAACATCACCTTCAAATCTCGATAATTCCAGCCTGT
TTTTGTTTGTCCAGGTTGAGACTTGTGGCTAATTTGGACCTGTTAAAGTT
AACTATTACTATGGTCTATTCCCCCGTAATATAGCCCAGACACGCTTGTG
TTCAACATTATTAGCGATGGAGAAGCCGCCCCATTACGAACGAAGCCCTT
CGTCACCCCCCCCCCCCCACTTACTGTGTTTGTACTCTGCTGCAGGTGCG
TAGCAACGTTCCGTGGATGTACGGAAGCATGACGCGCCTCGTGCGATGCA
ACAGTGACGCAGTTAGGCACCACGTGCAGCAGGTCCTCATACACAAGATG
GGTCCGGCCATGATGCCGAAATCGTGAGGACAGCGAGAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig13328:3346..6134-

>mRNA_S-dermatodea_contig13328.1972.1 ID=mRNA_S-dermatodea_contig13328.1972.1|Name=mRNA_S-dermatodea_contig13328.1972.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=504bp|location=Sequence derived from alignment at S-dermatodea_contig13328:3346..6134- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGGGCTGGAGCTGAGCCTGCCCGGGTTGGACCATTCGGCACTCGTGGA
GGAGGTGAAGGAGACCACCGCCCTCGCCATCCTTGCGCTGAGGAGCATGA
TGCATATCTGCGAGGACCAGATGGGGCTGGAGCTGAGCCTGCCCGGGTTG
GACCATTCGGCACTCGTGGAGGAGGTGAAGGAGACCACCGCCCTCGCCAT
CCTTGCGCTGAGGAGCATGATGCATATCTGCGAGGACCAGGTGCGTAGCA
ACGTTCCGTGGATGTACGGAAGCATGACGCGCCTCGTGCGATGCAACAGT
GACGCAGTTAGGCACCACGTGCAGCAGGTCCTCATACACAAGATGGGTCC
GGCCATGATGCCGAAATCGTGAGTGCGTAGCAACGTTCCGTGGATGTACG
GAAGCATGACGCGCCTCGTGCGATGCAACAGTGACGCAGTTAGGCACCAC
GTGCAGCAGGTCCTCATACACAAGATGGGTCCGGCCATGATGCCGAAATC
GTGA
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