mRNA_S-dermatodea_contig13324.1969.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13324.1969.1
Unique NamemRNA_S-dermatodea_contig13324.1969.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Match: D7FLS7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS7_ECTSI)

HSP 1 Score: 114 bits (284), Expect = 5.050e-31
Identity = 59/66 (89.39%), Postives = 65/66 (98.48%), Query Frame = 1
Query:   10 ELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQDLEESRQNVAKRLELIEREM 207
            ELQALAASR+QFYQQANENGMVKQELDLLED+A VFKL+GPVL+KQDLEE++QNVAKRLELIEREM
Sbjct:   23 ELQALAASRSQFYQQANENGMVKQELDLLEDEAPVFKLVGPVLIKQDLEEAKQNVAKRLELIEREM 88          
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Match: A0A7S2Y415_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y415_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.350e-21
Identity = 46/66 (69.70%), Postives = 55/66 (83.33%), Query Frame = 1
Query:   10 ELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQDLEESRQNVAKRLELIEREM 207
            E+Q L   R + YQQANENGMVKQELDLL+    V+K+IGPVLMKQDL+E+R NVAKRL+LI+REM
Sbjct:   21 EIQELMEKRQKTYQQANENGMVKQELDLLDSTTPVYKMIGPVLMKQDLDEARDNVAKRLDLIQREM 86          
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Match: A0A5D6XI54_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XI54_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.550e-21
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    7 EELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQDLEESRQNVAKRLELIEREM 207
            EE+Q LA  R Q+ QQANEN MVK+ELDLL DDAKVFKLIGPVL+KQD++E++ NV KRLE I  E+
Sbjct:   21 EEVQVLATQRQQYAQQANENTMVKKELDLLSDDAKVFKLIGPVLLKQDVDEAKANVNKRLEFINNEL 87          
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Match: A0A8K1CR62_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CR62_PYTOL)

HSP 1 Score: 85.1 bits (209), Expect = 1.050e-19
Identity = 45/67 (67.16%), Postives = 53/67 (79.10%), Query Frame = 1
Query:    7 EELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQDLEESRQNVAKRLELIEREM 207
            EE+Q LA  R Q+ QQA+EN MV+QELDLL DDAKVFKLIGPVL+KQD  E++ NV KRLE I  E+
Sbjct:   19 EEVQVLATQRQQYAQQASENTMVQQELDLLGDDAKVFKLIGPVLLKQDASEAKTNVKKRLEFINNEL 85          
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Match: F0WAV7_9STRA (Uncharacterized protein AlNc14C48G3819 n=2 Tax=Albugo TaxID=65356 RepID=F0WAV7_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.490e-19
Identity = 41/67 (61.19%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    7 EELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQDLEESRQNVAKRLELIEREM 207
            EELQ L A + ++ QQANEN MVKQELDL+ D+ KV+K++GPVL+KQDLEE++ NV KR+E I+ E+
Sbjct:   17 EELQVLVAQQQKYRQQANENNMVKQELDLVHDETKVYKMVGPVLLKQDLEEAKTNVNKRIEFIKHEL 83          
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Match: A0A3F2RF90_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A3F2RF90_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.610e-19
Identity = 42/67 (62.69%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    7 EELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQDLEESRQNVAKRLELIEREM 207
            +E+Q LAA R  + QQANEN MVK+ELDLL+++AKVFKL+GPVL+KQD++E++ NV KRLE I  E+
Sbjct:   20 DEVQVLAAQRQTYAQQANENDMVKKELDLLDEEAKVFKLVGPVLLKQDVDEAKTNVNKRLEFINNEL 86          
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Match: A0A2D4C4U7_PYTIN (STI1 domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C4U7_PYTIN)

HSP 1 Score: 89.4 bits (220), Expect = 2.250e-19
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    7 EELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQDLEESRQNVAKRLELIEREM 207
            EE+Q LA  R QF QQANEN MVKQELDLLEDDAKV+KLIGPVL+KQ++ +++ NV KRLE I  E+
Sbjct:  290 EEVQVLATQRQQFAQQANENSMVKQELDLLEDDAKVYKLIGPVLLKQEVGDAKTNVKKRLEFINNEL 356          
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Match: A0A6V1PDA7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PDA7_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 5.770e-19
Identity = 42/66 (63.64%), Postives = 52/66 (78.79%), Query Frame = 1
Query:   10 ELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQDLEESRQNVAKRLELIEREM 207
            +LQ L   R QFY  ANENGMV QELDLL DDA+VFK++GPVL+KQDL E++ NV KRL+ I+ +M
Sbjct:   21 DLQELMFKRQQFYSSANENGMVAQELDLLADDAQVFKMLGPVLIKQDLAEAKDNVTKRLDFIQDQM 86          
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Match: D0NCV8_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NCV8_PHYIT)

HSP 1 Score: 83.2 bits (204), Expect = 6.490e-19
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    7 EELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQDLEESRQNVAKRLELIEREM 207
            +E+Q LA  R  + QQANEN MVK+ELDLL+D+AKV+KL+GPVL+KQD +E++ NV KRLE I  E+
Sbjct:   20 DEVQVLATQRQTYAQQANENDMVKKELDLLDDEAKVYKLVGPVLLKQDADEAKSNVNKRLEFINNEL 86          
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Match: H3GRS3_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRS3_PHYRM)

HSP 1 Score: 82.4 bits (202), Expect = 1.300e-18
Identity = 40/67 (59.70%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    7 EELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQDLEESRQNVAKRLELIEREM 207
            +E+Q LA+ R  + QQANENGMVK EL+LL+D+A+V+KL+GPVL+KQD +E++ NV KRLE I  E+
Sbjct:   20 DEVQVLASQRQTYAQQANENGMVKTELELLDDEARVYKLVGPVLLKQDADEAKTNVNKRLEFINNEL 86          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13324.1969.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLS7_ECTSI5.050e-3189.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2Y415_9STRA1.350e-2169.70Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5D6XI54_9STRA3.550e-2168.66Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1CR62_PYTOL1.050e-1967.16Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WAV7_9STRA1.490e-1961.19Uncharacterized protein AlNc14C48G3819 n=2 Tax=Alb... [more]
A0A3F2RF90_9STRA1.610e-1962.69Uncharacterized protein n=3 Tax=Phytophthora TaxID... [more]
A0A2D4C4U7_PYTIN2.250e-1968.66STI1 domain-containing protein n=1 Tax=Pythium ins... [more]
A0A6V1PDA7_HETAK5.770e-1963.64Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
D0NCV8_PHYIT6.490e-1961.19Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
H3GRS3_PHYRM1.300e-1859.70Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13324contigS-dermatodea_contig13324:6000..6521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue5.7e-24
Seed eggNOG ortholog2880.D7FLS7
Preferred namePFDN6
KEGG koko:K02989,ko:K04798
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006457,GO:0007021,GO:0008092,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0015631,GO:0016043,GO:0016272,GO:0019219,GO:0019222,GO:0022607,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034622,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051082,GO:0051087,GO:0051131,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0071840,GO:0080090,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.unfolded protein binding
EggNOG OGsCOG1382@1,KOG3478@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPrefoldin beta-like
Ec32 orthologEc-00_007990.1
Exons2
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924282.391691-CDS-S-dermatodea_contig13324:5999..61281622924282.391691-CDS-S-dermatodea_contig13324:5999..6128Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13324 6000..6128 -
1694079148.7744606-CDS-S-dermatodea_contig13324:5999..61281694079148.7744606-CDS-S-dermatodea_contig13324:5999..6128Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13324 6000..6128 -
1622924282.404252-CDS-S-dermatodea_contig13324:6440..65211622924282.404252-CDS-S-dermatodea_contig13324:6440..6521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13324 6441..6521 -
1694079148.7848825-CDS-S-dermatodea_contig13324:6440..65211694079148.7848825-CDS-S-dermatodea_contig13324:6440..6521Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13324 6441..6521 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13324.1969.1prot_S-dermatodea_contig13324.1969.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13324 6000..6521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13324.1969.1

>prot_S-dermatodea_contig13324.1969.1 ID=prot_S-dermatodea_contig13324.1969.1|Name=mRNA_S-dermatodea_contig13324.1969.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
CLEELQALAASRTQFYQQANENGMVKQELDLLEDDAKVFKLIGPVLMKQD
LEESRQNVAKRLELIEREM*
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mRNA from alignment at S-dermatodea_contig13324:6000..6521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13324.1969.1 ID=mRNA_S-dermatodea_contig13324.1969.1|Name=mRNA_S-dermatodea_contig13324.1969.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=522bp|location=Sequence derived from alignment at S-dermatodea_contig13324:6000..6521- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCCTTGAAGAGCTCCAGGCCCTTGCGGCGTCACGGACTCAGTTCTACCA ACAAGCGAACGAAAATGGGATGGTGAAACAGGTACGTGCTGGGCCGCCTG CCACGGAAGTTGCCTGGTGAGGTTTGCGCTGGAAGCGGCTGGCAATCCGT GGAGCGTACGGGCCAGTATAACCCTTGAACGGTCGGTCATACGTATTAAT AGCATGTCCTCTTGACACCCTAGAGAGTTATGACGAATTCGGTCTGCCAA AAGCAATCCTGCATATAGGCGCCCCGTTTTAGTGAACACGCGCGTGCAGG TCAAGTGCATGTAAAGTTTCTTTCGTCAATAGCGGCTACTGGTACGTCGT ATCGGGGGCTCGCCGTCCGCTGTGGTCGCCCCTTGTGTCTCAGGAGCTGG ACCTGTTGGAGGATGACGCGAAGGTGTTCAAGTTGATAGGGCCCGTCCTG ATGAAACAGGATCTGGAAGAGTCCAGGCAGAACGTGGCCAAGCGACTGGA ACTCATCGAGCGAGAGATGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13324:6000..6521-

>mRNA_S-dermatodea_contig13324.1969.1 ID=mRNA_S-dermatodea_contig13324.1969.1|Name=mRNA_S-dermatodea_contig13324.1969.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig13324:6000..6521- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGCCTTGAAGAGCTCCAGGCCCTTGCGGCGTCACGGACTCAGTTCTACCA
ACAAGCGAACGAAAATGGGATGGTGAAACAGTGCCTTGAAGAGCTCCAGG
CCCTTGCGGCGTCACGGACTCAGTTCTACCAACAAGCGAACGAAAATGGG
ATGGTGAAACAGGAGCTGGACCTGTTGGAGGATGACGCGAAGGTGTTCAA
GTTGATAGGGCCCGTCCTGATGAAACAGGATCTGGAAGAGTCCAGGCAGA
ACGTGGCCAAGCGACTGGAACTCATCGAGCGAGAGATGTAAGAGCTGGAC
CTGTTGGAGGATGACGCGAAGGTGTTCAAGTTGATAGGGCCCGTCCTGAT
GAAACAGGATCTGGAAGAGTCCAGGCAGAACGTGGCCAAGCGACTGGAAC
TCATCGAGCGAGAGATGTAA
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