mRNA_S-dermatodea_contig13300.1963.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig13300.1963.1 vs. uniprot
Match: D8LLG8_ECTSI (Short-chain dehydrogenase/reductase SDR n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLG8_ECTSI) HSP 1 Score: 255 bits (652), Expect = 6.910e-80 Identity = 167/345 (48.41%), Postives = 200/345 (57.97%), Query Frame = 1
Query: 1 ELPSYSYSLACSLRLPPQGDAALKRIRGQGRAGR------------ASVHLLDVTCVDSLGNFRENCVNGELGGKVDILFNNAGVCFAGAD-----------CAVLEETLAVNFCGALGAMEACLPAM------------KNTVLM---------------PTVVWVSSGDGELCFLGSKWQGLLGDVDSVEEVKLHLSNLLASA----------NITTPSG-----EGG--DEIAFGTTPAYSLSKAAANAAVRTWAPAL------------------ARERRVRLVSVCPGDVLTRLSSADEKERGEGVSPQKAALSVVDVALRGA-DFPAGRFYRGGEEIDW 777
+L SY LAC R +G AL+R+RG+ + R AS LDVTC S+ FRE+CVNG LGG+VDILFNNAGVCF D +L ETLAVNF GAL +EAC+PA+ K LM PTVVW+SSGDGELCFLGSKW+GLL + S+E+VK LS+LLA+A N T P+G E G +E+AFG TPAYSLSKAA NAAVRTWAP + R VRLV+VCPGDVLTR++S +E RG+ VSP++AA+ VVD+AL A D PAGRFYR GEEI W
Sbjct: 75 KLGSYRVVLAC--RNEQEGRDALERLRGKQQQRRQRQYGTIATNFLASFFPLDVTCPRSVEVFREDCVNGHLGGRVDILFNNAGVCFPEQDGNGPQNNRAAAAGILRETLAVNFFGALEVVEACVPALQAAAPMVARKEKKKAALMLEDNGATSTMTSLKPPTVVWISSGDGELCFLGSKWRGLLAEAQSLEDVKSPLSDLLATATDTITTTSKQNSTAPAGSQQEGEQGQVEEMAFGPTPAYSLSKAAVNAAVRTWAPCIQAPTVPAEAPENTKSRTGVRGGGVRLVAVCPGDVLTRMTSKEEMARGDAVSPEEAAVEVVDLALSSANDIPAGRFYRHGEEIGW 417
BLAST of mRNA_S-dermatodea_contig13300.1963.1 vs. uniprot
Match: A0A7S1GWA1_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GWA1_HEMAN) HSP 1 Score: 134 bits (337), Expect = 1.350e-34 Identity = 90/224 (40.18%), Postives = 130/224 (58.04%), Query Frame = 1
Query: 118 LDVTCVDSLGNFRENCVNGELGGKVDILFNNAGVCFAGADCAVLEETLAVNFCGALGAMEACLPAMKNTVLMPTVVWVSSGDGELCFLGSKWQGLLGDVDSVEEVKLHLSNLLASANITTPSGEGGDEIAFGTTPAYSLSKAAANAAVRTWAPALA---RERRVRLVSVCPGDVLTRLSSADEKERGEGV-SPQKAALSVVDVALRGADFPAGRFYRGGEEIDW 777
LDV C S+G E C++G L D+L +NAGVC G+D ++ + + VNF GAL + A PAM+ VV +SSG+GEL +L S+ Q LL ++SV+E+ + + A EGG+E+AFG TP+YS+SKA NA R A + + + + +VCPGDV T + + DEK+ GV SP++AA+ VV VAL + G F+R + I W
Sbjct: 51 LDVGCDASVGGVAEQCLDGRLP-VPDLLISNAGVCLEGSDRSIFDHAMQVNFFGALRMIRALAPAMRRKG--GCVVNISSGEGELVYLCSRLQELLPSIESVDELCRVMEACIDDA-------EGGEELAFGPTPSYSVSKAGLNALTRILACSTRGSPHDHTLGVRAVCPGDVDTAMCTLDEKD---GVLSPEQAAIDVVWVALHPEECANGGFFRHRDSIPW 261
BLAST of mRNA_S-dermatodea_contig13300.1963.1 vs. uniprot
Match: A0A835YS44_9STRA (Short-chain dehydrogenase/reductase SDR n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS44_9STRA) HSP 1 Score: 136 bits (342), Expect = 1.420e-34 Identity = 96/248 (38.71%), Postives = 129/248 (52.02%), Query Frame = 1
Query: 97 GRASVHLLDVTCVDSLGNFRENCVNGELGGKVDILFNNAGVCFAGADCAVLEETLAVNFCGALGAMEACLPAMKNTVLMPTVVWVSSGDGELCFLGSKWQGLLGDVDSVEEVKLHLSNLLASANITTPSGEGGDEIAFGTTPAYSLSKAAANAAVRT-----WAPALAR----------------ERRVRLVSVCPGDVLTRLSSADEKERGEGVSPQKAALSVVDVALRGADFPAGRFYRGGEEIDW 777
G + LDV+ DS+ +F C+ G + +FNNAGVC GAD A L+ +L VNF G L MEACLP M + VV VSSGDGEL +L S L +V++V+ ++L A + + G E+AFG TPAYS+SKA NAAVR +AP A +R +++VCPGDV T ++S +E +R +S +AA VV +A G FYR G I W
Sbjct: 98 GEITFRQLDVSSPDSIKHFATQCLPTLPSGSLTAVFNNAGVCLPGADIATLQYSLGVNFYGPLRVMEACLPFMDEEGV---VVNVSSGDGELLWLNSDIAEALRQAQTVQDVRAAADDILQRAAL-----DPGAELAFGATPAYSVSKALLNAAVRCRHGIPYAPDPAEGALNAGRASSRGGGSTAQRPAVIAVCPGDVRTLMASEEEAQREGVLSALEAAAHVVGLATWRERTAGGLFYRYGAVIPW 337
BLAST of mRNA_S-dermatodea_contig13300.1963.1 vs. uniprot
Match: L1IQ43_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IQ43_GUITC) HSP 1 Score: 90.9 bits (224), Expect = 5.160e-19 Identity = 60/147 (40.82%), Postives = 85/147 (57.82%), Query Frame = 1
Query: 340 VVWVSSGDGELCFLGSKWQGLLGDVDSVEEVKLHLSNLLASANITTPSGEGGDEIAFGTTPAYSLSKAAANAAVRTWAPALARER-RVRLVSVCPGDVLTRLSSADEKERGEGVSPQKAALSVVDVALRGADFPAGRFYRGGEEIDW 777
++ +SSGDGEL L S+ Q LL +V S +++ L L + G E+AFG TPAYS+SKAA N R A + + ++R V+VCPGDV TR+ SA E +R ++P +AA V+ R ++ P+G FYR E I W
Sbjct: 25 IINISSGDGELACLNSELQRLLKEVQSESDLESLLRELWEGTCLR------GQELAFGPTPAYSVSKAALNVLTRIQAREIEMSQLKLRAVAVCPGDVDTRMCSAGEGDRV--LTPAQAAGDVIWAIERPSECPSGGFYREREPIPW 163
BLAST of mRNA_S-dermatodea_contig13300.1963.1 vs. uniprot
Match: A0A7S2FFM5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FFM5_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 6.020e-8 Identity = 66/189 (34.92%), Postives = 88/189 (46.56%), Query Frame = 1
Query: 307 PAMKNTVLMPTVVWVSSGDGELCFLGSKWQGLLGDVDSVEEV-KLHLSNLLASANITTPSG---------------------EGGDEIAFGTTPAYSLSKAAANAAVRTWAPALARERRVRLVS-VCPGDVL-TRLSSADEKERGE-GVSPQKAALSVVDVAL-------RGADFPAGRFYRGGEEIDW 777
PA K V V VSSGDGEL L S + LG + +V L L+ A A ++ E G+E+AFG TPAYS+SKAA NA R ++R ++ VCPGD++ +R+ S D GE VS +AA V VA+ +GA AG F+R +DW
Sbjct: 11 PATKRAV-----VNVSSGDGELSMLNSAIRRALGKARTPADVLALALAEPTALALMSEHGSHCGLEAWPVSMGLDGLLRELLEEGEELAFGPTPAYSVSKAALNALTRV----VSRGGSACTINAVCPGDIVGSRMYSGDGSGSGEWDVSVARAAEDVCWVAIQSLQDGGKGAGM-AGGFWRFRRRVDW 189
BLAST of mRNA_S-dermatodea_contig13300.1963.1 vs. uniprot
Match: UPI001BA51DE4 (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Catenulispora pinistramenti TaxID=2705254 RepID=UPI001BA51DE4) HSP 1 Score: 54.7 bits (130), Expect = 2.660e-5 Identity = 39/104 (37.50%), Postives = 53/104 (50.96%), Query Frame = 1
Query: 469 ITTPSGEGG-DEIAFGTTPAYSLSKAAANAAVRTWAPALARERRVRLVSVCPGDVLTRLSSADEKERGEGVSPQKAALSVVDVALRGADFPAGRFYRGGEEIDW 777
+ SG G E+ G+TPAYSL+KAA NA R A L R + + +VCPG V T + + +G A +V AL + P G F+R G+ IDW
Sbjct: 131 VNVSSGAGSLTEMTSGSTPAYSLTKAALNALTRMLAADL-RPEGILVNAVCPGWVATDMGGPGGRPVHDG------AAGIVWAALLPDNGPTGGFFRDGQAIDW 227
BLAST of mRNA_S-dermatodea_contig13300.1963.1 vs. uniprot
Match: A0A2T3XW68_9BURK (Short-chain dehydrogenase n=1 Tax=Trinickia symbiotica TaxID=863227 RepID=A0A2T3XW68_9BURK) HSP 1 Score: 53.9 bits (128), Expect = 5.230e-5 Identity = 34/89 (38.20%), Postives = 47/89 (52.81%), Query Frame = 1
Query: 511 GTTPAYSLSKAAANAAVRTWAPALARERRVRLVSVCPGDVLTRLSSADEKERGEGVSPQKAALSVVDVALRGADFPAGRFYRGGEEIDW 777
G AY +SK A NA R A L + +++ SVCPG V TR+ + GE +P AA V+ A+ G+D P G F++ E I W
Sbjct: 151 GNAAAYRISKTALNAVTRVAAADLIDKGDIKVNSVCPGWVRTRMGGLN----GE-TAPDDAARDVIWAAMLGSDGPTGGFFKNREPIAW 234
BLAST of mRNA_S-dermatodea_contig13300.1963.1 vs. uniprot
Match: A0A7S2U7F4_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7F4_9STRA) HSP 1 Score: 53.5 bits (127), Expect = 5.870e-5 Identity = 63/205 (30.73%), Postives = 93/205 (45.37%), Query Frame = 1
Query: 184 GKVDILFNNAGVCFAGADCAVLEE----TLAVNFCGALGAMEACLPAMKNTVLMPTVVWVSSGDGELCFLGSKWQGLLGDVDSVEEVKLHLSNLLASANITTPSGEGGD-EIAFGTTPAYSLSKAAANAAVRTWAPALARER--RVRLVSVCPGDVLTRLSSADEKERGEGVSPQKAALSVVDVALRGADFPAGRFYRGGEEIDW 777
GKVD+L NNAG+ F GAD +E TL +NF G + E LP ++ +V V+SG G L L SK L D S + + N L N + +G E +G + Y +SK A AA + LARE R+ + CPG T ++S +G + A +++ + D P G F+ + +W
Sbjct: 26 GKVDVLVNNAGLAFKGADPTPFKEQTKPTLDINFRGTINFTEQMLPLLRKGS-DARIVNVASGSGHLGQLPSKE---LRDKFSAPSLTMPELNQLVD-NFESDVQQGKHRETGWGNSN-YGMSKLALIAATKV----LAREEAPRIAVNCCCPGYCDTDMTS----HKGHRHPKEGAKNAIIPATME--DPPYGEFFSDFKVGEW 214 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13300.1963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig13300.1963.1 >prot_S-dermatodea_contig13300.1963.1 ID=prot_S-dermatodea_contig13300.1963.1|Name=mRNA_S-dermatodea_contig13300.1963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=260bp ELPSYSYSLACSLRLPPQGDAALKRIRGQGRAGRASVHLLDVTCVDSLGNback to top mRNA from alignment at S-dermatodea_contig13300:4319..5800- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig13300.1963.1 ID=mRNA_S-dermatodea_contig13300.1963.1|Name=mRNA_S-dermatodea_contig13300.1963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1482bp|location=Sequence derived from alignment at S-dermatodea_contig13300:4319..5800- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig13300:4319..5800- >mRNA_S-dermatodea_contig13300.1963.1 ID=mRNA_S-dermatodea_contig13300.1963.1|Name=mRNA_S-dermatodea_contig13300.1963.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1560bp|location=Sequence derived from alignment at S-dermatodea_contig13300:4319..5800- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |