mRNA_S-dermatodea_contig13295.1959.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13295.1959.1
Unique NamemRNA_S-dermatodea_contig13295.1959.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13295.1959.1 vs. uniprot
Match: D8LIP7_ECTSI (DEAD box helicase DEAD/DEAH box helicase-like protein (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIP7_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 9.940e-8
Identity = 47/100 (47.00%), Postives = 55/100 (55.00%), Query Frame = 3 
Query:  192 MAMLRRLQALGAKSGSDPAAQLLRSLSSRCSTGNTPR------QGGVDSRDAVVSRSNL--GVIGPA----GAARRI-----NSPNRGLCGLPGAGEWRG 440
            MAMLRRL ALG KSG+D A+ LLRSLS+R S            +    + +A V R NL  G IGPA    G+  R      +SPNRGL GL G G W G
Sbjct:    1 MAMLRRLHALGTKSGTDQASHLLRSLSTRSSXXXXXXXXXXADENTNTASNASVQRRNLCFGAIGPASKSNGSGSRYVFGSGSSPNRGLSGLAGTGTWSG 100
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13295.1959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LIP7_ECTSI9.940e-847.00DEAD box helicase DEAD/DEAH box helicase-like prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13295contigS-dermatodea_contig13295:4479..4918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D8LIP7
KEGG koko:K16911
KEGG Pathwayko01110,map01110
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0331@2759
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009,ko03036
Hectar predicted targeting categorymitochondrion
Exons1
Model size442
Cds size249
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.7379446-UTR-S-dermatodea_contig13295:4478..46691622924281.7379446-UTR-S-dermatodea_contig13295:4478..4669Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13295 4479..4669 +
1694079148.3625493-UTR-S-dermatodea_contig13295:4478..46691694079148.3625493-UTR-S-dermatodea_contig13295:4478..4669Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13295 4479..4669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.7498105-CDS-S-dermatodea_contig13295:4669..49181622924281.7498105-CDS-S-dermatodea_contig13295:4669..4918Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13295 4670..4918 +
1694079148.3733082-CDS-S-dermatodea_contig13295:4669..49181694079148.3733082-CDS-S-dermatodea_contig13295:4669..4918Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13295 4670..4918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13295.1959.1prot_S-dermatodea_contig13295.1959.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13295 4670..4918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13295.1959.1

>prot_S-dermatodea_contig13295.1959.1 ID=prot_S-dermatodea_contig13295.1959.1|Name=mRNA_S-dermatodea_contig13295.1959.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=83bp
MAMLRRLQALGAKSGSDPAAQLLRSLSSRCSTGNTPRQGGVDSRDAVVSR
SNLGVIGPAGAARRINSPNRGLCGLPGAGEWRG
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mRNA from alignment at S-dermatodea_contig13295:4479..4918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13295.1959.1 ID=mRNA_S-dermatodea_contig13295.1959.1|Name=mRNA_S-dermatodea_contig13295.1959.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=440bp|location=Sequence derived from alignment at S-dermatodea_contig13295:4479..4918+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TTGAGACAAGCTCGAGCTCACAGCGTCGTCCAAGGCATCAGACCACGGAC
AGACCAACACCGGAGTGCGTCTCTTGAGATCGTATATACCTGCGCAGCGA
GCAAAAAACCTTCCCGCGAAAGCAGAACCACCGCCTGCAGGTCAGGCCTC
CACCACCACCGCACTCCTCAACACACAGAGAAGCATCACAGATGGCCATG
CTCCGTCGATTACAGGCCCTAGGGGCCAAATCAGGGTCAGACCCAGCCGC
TCAGCTGCTCCGCTCCCTATCATCGCGTTGCAGCACCGGCAACACTCCCC
GCCAGGGTGGCGTAGACTCCAGAGACGCCGTGGTGTCGCGAAGCAATCTG
GGCGTGATCGGCCCAGCGGGGGCCGCCCGCCGTATCAACAGCCCCAACAG
AGGGCTGTGTGGTTTGCCTGGGGCAGGGGAGTGGAGGGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13295:4479..4918+

>mRNA_S-dermatodea_contig13295.1959.1 ID=mRNA_S-dermatodea_contig13295.1959.1|Name=mRNA_S-dermatodea_contig13295.1959.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at S-dermatodea_contig13295:4479..4918+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCATGCTCCGTCGATTACAGGCCCTAGGGGCCAAATCAGGGTCAGA
CCCAGCCGCTCAGCTGCTCCGCTCCCTATCATCGCGTTGCAGCACCGGCA
ACACTCCCCGCCAGGGTGGCGTAGACTCCAGAGACGCCGTGGTGTCGCGA
AGCAATCTGGGCGTGATCGGCCCAGCGGGGGCCGCCCGCCGTATCAACAG
CCCCAACAGAGGGCTGTGTGGTTTGCCTGGGGCAGGGGAGTGGAGGGGGA
TGGCCATGCTCCGTCGATTACAGGCCCTAGGGGCCAAATCAGGGTCAGAC
CCAGCCGCTCAGCTGCTCCGCTCCCTATCATCGCGTTGCAGCACCGGCAA
CACTCCCCGCCAGGGTGGCGTAGACTCCAGAGACGCCGTGGTGTCGCGAA
GCAATCTGGGCGTGATCGGCCCAGCGGGGGCCGCCCGCCGTATCAACAGC
CCCAACAGAGGGCTGTGTGGTTTGCCTGGGGCAGGGGAGTGGAGGGGG
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