mRNA_S-dermatodea_contig13289.1950.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13289.1950.1
Unique NamemRNA_S-dermatodea_contig13289.1950.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig13289.1950.1 vs. uniprot
Match: A0A6H5JQW8_9PHAE (DUF2470 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQW8_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.210e-25
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 3 
Query:    3 KAIPADLMDTIARICVVMNRDFQVELESFVRAFGGKDTDRPTGACEMSDLTPDGFVVRAALFPDEPVTVSFPIECLSARDFQEQILNLSEQAMVIV 290
            K +  +L+ TIARIC VMNRDFQ EL +FVRAFGG   D   G CEM  L+PDGF+VR+   PD+PV+++F  EC SA DFQ+QIL +SE+AM I 
Sbjct:  217 KYVSPELIGTIARICAVMNRDFQDELRNFVRAFGGPVADEMVGNCEMLSLSPDGFMVRSDANPDKPVSIAFSKECQSALDFQKQILLVSERAMAIA 312
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13289.1950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JQW8_9PHAE2.210e-2558.33DUF2470 domain-containing protein n=2 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13289contigS-dermatodea_contig13289:1279..2910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF2470
Ec32 orthologEc-01_011130.1
Exons2
Model size1079
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13289.1950.1prot_S-dermatodea_contig13289.1950.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13289 1302..2124 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.1026897-UTR-S-dermatodea_contig13289:1278..13011622924281.1026897-UTR-S-dermatodea_contig13289:1278..1301Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13289 1279..1301 +
1694079147.8970842-UTR-S-dermatodea_contig13289:1278..13011694079147.8970842-UTR-S-dermatodea_contig13289:1278..1301Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13289 1279..1301 +
1622924281.1312783-UTR-S-dermatodea_contig13289:2124..29101622924281.1312783-UTR-S-dermatodea_contig13289:2124..2910Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13289 2125..2910 +
1694079147.9268444-UTR-S-dermatodea_contig13289:2124..29101694079147.9268444-UTR-S-dermatodea_contig13289:2124..2910Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13289 2125..2910 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924281.1138115-CDS-S-dermatodea_contig13289:1301..13491622924281.1138115-CDS-S-dermatodea_contig13289:1301..1349Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13289 1302..1349 +
1694079147.9080496-CDS-S-dermatodea_contig13289:1301..13491694079147.9080496-CDS-S-dermatodea_contig13289:1301..1349Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13289 1302..1349 +
1622924281.1224117-CDS-S-dermatodea_contig13289:1902..21241622924281.1224117-CDS-S-dermatodea_contig13289:1902..2124Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13289 1903..2124 +
1694079147.9158924-CDS-S-dermatodea_contig13289:1902..21241694079147.9158924-CDS-S-dermatodea_contig13289:1902..2124Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13289 1903..2124 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13289.1950.1

>prot_S-dermatodea_contig13289.1950.1 ID=prot_S-dermatodea_contig13289.1950.1|Name=mRNA_S-dermatodea_contig13289.1950.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=90bp
MDTIARICVVMNRDFQVELESFVRAFGGKDTDRPTGACEMSDLTPDGFVV
RAALFPDEPVTVSFPIECLSARDFQEQILNLSEQAMVIV*
back to top

mRNA from alignment at S-dermatodea_contig13289:1279..2910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13289.1950.1 ID=mRNA_S-dermatodea_contig13289.1950.1|Name=mRNA_S-dermatodea_contig13289.1950.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1632bp|location=Sequence derived from alignment at S-dermatodea_contig13289:1279..2910+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGAAGGCAATCCCGGCGGACCTCATGGACACGATCGCGAGGATTTGCGTG
GTGATGAACCGTGACTTTCAGGTAGGGCTCGGGATTACCCGCGAGGGTGC
TGTGGGTGTACTATCGAGTTCGGTACTTGTACAGTGTCTGCAGCGGACGG
ACAGGGGTACAAGTTGAAATGTTGACTTGCCTGCGCGTTTTCCGTGCCGT
GATTTGCTGAAAAGATAGTGAGTGCTGCGGTAAGTACGTATGATGGGATG
AGCGCGGCCGTGGGGAAGAGGAGCTACTGTCAACCGTGCGGCAGCGGAAG
AACAGTTTTAGTTTGGCGGCGAGCGCGGAGCGGGCGGTTATAGCATTTAC
CTTGATTTTTCCTCTGTTCCAAAGCTTGGCGTTAAACCCCCCTCTCATCT
AGCATACAAGTAATGTCCTTGCCAAAATGTGCGACGTTAAATCTTCCCCG
CCACGTGTCGCCACAGCGTTTTCTTCCTAATCAACACGGTGCTCTAAAGC
CACGGTCCTTTACCCTTTACTTCGAAGTACATGTTTTTTGGTCAAGCGCC
AACTAAGCGATGCCTCTCCTCTCGATATGACCGCAATGATACCACCCCGA
AAACCCTGCGCGTGCTTAATCAAGGTCGAGCTGGAGAGCTTCGTGAGAGC
GTTCGGGGGGAAGGACACCGATAGACCCACCGGAGCATGCGAAATGTCGG
ATCTCACACCGGACGGGTTCGTGGTACGGGCGGCGCTTTTCCCGGATGAG
CCTGTCACAGTTTCCTTCCCTATAGAGTGCCTCAGCGCGCGAGACTTTCA
GGAGCAGATATTGAACCTCAGCGAGCAGGCAATGGTGATTGTGTGATCGC
AATGTGGGCGAGGTCAGGGGCGGGGGCGGCGGTTATAATGCTTGCGCGCG
CGCCCCGTTGTTGAACTGGTTGACCAAACAGCCCGGTAAGCGGAGGACCC
GGGTTCAAATCCCGGCAGAGTCGATATTTATTTATTTTCTCTGCCTCCGC
CGCGGAAAGCGCGATAGCGTGAGTAAGCGAAAGCCCGAGAAATCGGCGAG
CTGCAGGAGCGCCGATTTCAATGCATTCGCGATACGAATGAAAGGTGAGA
ACCGGGGAGAGATGGGATGATCCCTTGTGACCACAGACGGACCTACCTCG
GAAAAGCAAGTCATATTGTGTGCAAAAAAACATGGTTGACATCTGTCCCA
TGTGATATATTCCTAGAGCCACGACGCAGGCGGGACGTGGAAGTATCTGT
CGAGGCGATGAGGGTGTACTTGCTGTGAGGAAGGGGGGCGGGGTGTACTT
GTGTTAAACTCATGTCGCATCCAGACGGACATAGAGCACGTGTCCCAACA
ATGCCGGGACGGAGCGATATGCCGGGGTTTCGGTTCGCCGGCCAGGCTGC
GTTTCACGAGAATGATGCCAGCTGCTAGCGATAGTCTTCTGCGTTTGCGA
CGCCAACCGATATTCCATAGATATTGTGGAAATACGGGGCAACCAAATTT
ATTTTTGCGCAATCAGTAGGCGTGCCAAGTACCGCAAATGGACTCTGATC
TCCGTGCGAGTGCATAAGCGCTACATGCACGCAAGATACACGACGGTAGA
TGTGTGATACACTCGGACTATGATCTGCTCAT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig13289:1279..2910+

>mRNA_S-dermatodea_contig13289.1950.1 ID=mRNA_S-dermatodea_contig13289.1950.1|Name=mRNA_S-dermatodea_contig13289.1950.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig13289:1279..2910+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACACGATCGCGAGGATTTGCGTGGTGATGAACCGTGACTTTCAGAT
GGACACGATCGCGAGGATTTGCGTGGTGATGAACCGTGACTTTCAGGTCG
AGCTGGAGAGCTTCGTGAGAGCGTTCGGGGGGAAGGACACCGATAGACCC
ACCGGAGCATGCGAAATGTCGGATCTCACACCGGACGGGTTCGTGGTACG
GGCGGCGCTTTTCCCGGATGAGCCTGTCACAGTTTCCTTCCCTATAGAGT
GCCTCAGCGCGCGAGACTTTCAGGAGCAGATATTGAACCTCAGCGAGCAG
GCAATGGTGATTGTGTGAGTCGAGCTGGAGAGCTTCGTGAGAGCGTTCGG
GGGGAAGGACACCGATAGACCCACCGGAGCATGCGAAATGTCGGATCTCA
CACCGGACGGGTTCGTGGTACGGGCGGCGCTTTTCCCGGATGAGCCTGTC
ACAGTTTCCTTCCCTATAGAGTGCCTCAGCGCGCGAGACTTTCAGGAGCA
GATATTGAACCTCAGCGAGCAGGCAATGGTGATTGTGTGA
back to top