mRNA_S-dermatodea_contig13264.1939.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13264.1939.1
Unique NamemRNA_S-dermatodea_contig13264.1939.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13264.1939.1 vs. uniprot
Match: A0A6H5L3P2_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3P2_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 3.890e-41
Identity = 75/88 (85.23%), Postives = 83/88 (94.32%), Query Frame = 1 
Query:    1 VYSLMDSIVDDVFPIMQHFQTMLVKLQDELHSVNDGPSLEIVRAIQQISRDMHMITFYLRPMKMVATQLITDLPGSDADLKRHLEDVR 264
            VYSLMDSIVDDVFPIMQ FQ  LV+LQ++LHS + GPSL+IVRAIQQISRDMHMITFYLRPMK+VATQLITDLPG+DADLKRHLED+R
Sbjct:  709 VYSLMDSIVDDVFPIMQQFQAWLVQLQEQLHSEDAGPSLDIVRAIQQISRDMHMITFYLRPMKVVATQLITDLPGNDADLKRHLEDLR 796
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BLAST of mRNA_S-dermatodea_contig13264.1939.1 vs. uniprot
Match: D7G9B2_ECTSI (Magnesium and cobalt transport protein CorA n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B2_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.070e-40
Identity = 74/88 (84.09%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:    1 VYSLMDSIVDDVFPIMQHFQTMLVKLQDELHSVNDGPSLEIVRAIQQISRDMHMITFYLRPMKMVATQLITDLPGSDADLKRHLEDVR 264
            VYSLMDSIVDDVFPIMQ FQ  LV+LQ++LHS + GPSL+IVRAIQQISRDMHMITFYLRPMK+VA QLITDLPG+DADLKRHLED+R
Sbjct:  507 VYSLMDSIVDDVFPIMQQFQAWLVQLQEQLHSEDAGPSLDIVRAIQQISRDMHMITFYLRPMKVVAAQLITDLPGNDADLKRHLEDLR 594
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BLAST of mRNA_S-dermatodea_contig13264.1939.1 vs. uniprot
Match: A0A835Z9I1_9STRA (Cora-like Mg2+ transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9I1_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 5.710e-19
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1 
Query:    1 VYSLMDSIVDDVFPIMQHFQTMLVKLQDELHSVNDGPSLEIVRAIQQISRDMHMITFYLRPMKMVATQLITDLPGSDA--------DLKRHLEDV 261
            VY+L+D++VD +FPI+QHF T LV LQ+ +    D P L +V+ IQQ++RDM+ + FYLRP++    QL+ DLP  DA        DL+RHL D+
Sbjct:  486 VYALVDALVDGMFPIVQHFHTQLVGLQESIQGEEDTP-LTVVKDIQQVNRDMNALQFYLRPLRPAVAQLMNDLPAFDAAADAAAREDLRRHLMDL 579
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BLAST of mRNA_S-dermatodea_contig13264.1939.1 vs. uniprot
Match: A0A835YKG6_9STRA (Cora-like Mg2+ transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKG6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.980e-17
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:   34 VFPIMQHFQTMLVKLQDELHSVNDGPSLEIVRAIQQISRDMHMITFYLRPMKMVATQLITDLPGSD-ADLKRHLEDV 261
            +FPI+QHF   LV+LQ ++ S  + P L +V+AIQQI+RDM+M+ FYLRPMK    QL+ +LP +D  +L+RHLED+
Sbjct:  573 MFPIVQHFHRWLVQLQGKVQSEKETP-LAVVKAIQQINRDMNMLQFYLRPMKAAVAQLVAELPDADDKNLRRHLEDL 648
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13264.1939.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L3P2_9PHAE3.890e-4185.23EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D7G9B2_ECTSI1.070e-4084.09Magnesium and cobalt transport protein CorA n=1 Ta... [more]
A0A835Z9I1_9STRA5.710e-1947.37Cora-like Mg2+ transporter protein-domain-containi... [more]
A0A835YKG6_9STRA5.980e-1753.25Cora-like Mg2+ transporter protein-domain-containi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13264contigS-dermatodea_contig13264:671..5983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue5.3e-32
Seed eggNOG ortholog2880.D7G9B2
Preferred nameMGT1
EggNOG free text desc.CorA-like Mg2 transporter protein
EggNOG OGs2R8TN@2759,COG0598@1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size267
Cds size255
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13264.1939.1prot_S-dermatodea_contig13264.1939.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13264 683..5983 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.33917-UTR-S-dermatodea_contig13264:670..6821622924280.33917-UTR-S-dermatodea_contig13264:670..682Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13264 671..682 +
1694079147.299044-UTR-S-dermatodea_contig13264:670..6821694079147.299044-UTR-S-dermatodea_contig13264:670..682Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13264 671..682 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924280.351069-CDS-S-dermatodea_contig13264:682..7361622924280.351069-CDS-S-dermatodea_contig13264:682..736Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13264 683..736 +
1694079147.309154-CDS-S-dermatodea_contig13264:682..7361694079147.309154-CDS-S-dermatodea_contig13264:682..736Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13264 683..736 +
1622924280.359375-CDS-S-dermatodea_contig13264:4045..41921622924280.359375-CDS-S-dermatodea_contig13264:4045..4192Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13264 4046..4192 +
1694079147.317433-CDS-S-dermatodea_contig13264:4045..41921694079147.317433-CDS-S-dermatodea_contig13264:4045..4192Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13264 4046..4192 +
1622924280.3699398-CDS-S-dermatodea_contig13264:5929..59831622924280.3699398-CDS-S-dermatodea_contig13264:5929..5983Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13264 5930..5983 +
1694079147.326986-CDS-S-dermatodea_contig13264:5929..59831694079147.326986-CDS-S-dermatodea_contig13264:5929..5983Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13264 5930..5983 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13264.1939.1

>prot_S-dermatodea_contig13264.1939.1 ID=prot_S-dermatodea_contig13264.1939.1|Name=mRNA_S-dermatodea_contig13264.1939.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
MDSIVDDVFPIMQHFQTMLVKLQDELHSVNDGPSLEIVRAIQQISRDMHM
ITFYLRPMKMVATQLITDLPGSDADLKRHLEDVR*
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mRNA from alignment at S-dermatodea_contig13264:671..5983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13264.1939.1 ID=mRNA_S-dermatodea_contig13264.1939.1|Name=mRNA_S-dermatodea_contig13264.1939.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5313bp|location=Sequence derived from alignment at S-dermatodea_contig13264:671..5983+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGTACAGCCTGATGGATAGCATCGTGGACGACGTCTTCCCCATCATGCA
GCACTTCCAGACAATGGTAAGAAGCGTCCACGTCTACGCAAGACGCAAGC
ATAGCTTGTGTCCACAAACGATTTGCACCCGTGTGCTGCCCCTAGATTTT
GGCCAAATCGCGCGCTTCTCAGGAACACGCTCGCTTGGAGCAACGACACT
GTCTCCTGTGCGTGCCAGTACAGCTACAGTACTCAAGCATGCTTTGTGCC
CACCATCGAGTTGCAAGCGTGCGCTCTTAGATCGGCCAAATCACACGCTG
CTCGGGAATGCTCGTGGGAGCTACGACATATTCTCCATAAGGTTGAAGTA
TCTGCGGGTTTCCGTTGCTACTATTTATAGCAGATAGCCACGGCTACGCC
TTCGAGGTGTGCGTTCGTAAGCAGGTGGTGGCTGTAGGCCCCATAAAAAA
ACGACAGGGGGGCGGGGGGGGGGGTACTCAATGTTATGCATGCCGAATGT
TTCGAAACCCCCACGTTTGTTGTCCCATAAAAATAGCCTCACTACATCCC
TACTAAGAATAAATTCAAGGTGCTGTTAACAATTTACGAATGAAGATGTG
TGTACAGTAAGTTCGTTCGCGCGCGTTTATGTGTGTGTTTTCCTGTGCCC
TTCGCGTTTTCACCACAGCCATTGCAGCAACAGCAGCCTCGTGTACAGTA
CTTTATTAGCCGCGCGGTGTTGATGCGCGATGTGCGCTTGACGTGCGCGT
GCGAGCAACCGAGCCGATGACGGTGGAGGCCAGTGGTTGTGCTCACACCT
CCCACCAGCTGGCCAGCCCCCCTCCGGAGCAAACTCCCCCGCCCACACGA
GCAGCGGCACATCCCGTCCTGGTACCCAGCCCTCGCTCGAGTCCAAAGCT
GCAACAGGAGCGGTCGCGGTTTCCCTGTTCTCTCCCAACGCAGCGTCCTT
CTCCTTCTGTTGTGGGGGCTCGGCGCCCACCCCTGCTTCAGGTCGGGAGC
CTTGGATCTCTCCCTTGTCCGCCCCCCGCCTCACTGACGGCATGGGTCGG
GGGATTCGCGAGCGGCCTTCAGCCATGATTGACTGATAATCTCCTAAAAA
AGAGAGTGATTTTAAAGACAGAGAGCGAGCGTTGAGGTACTGTACCACCT
TTATCACAAGGGAAGATGGTCCAAGCTGTTAAACACACCTATAGAGGCTC
ACGTTGTTGCATTTAATGCTATGGTTGCATGTCGTGGGTGATGTTATATA
TCGTTACGGTACAAGTGTCTTTCTGTTTGTCCTCTGGGCGATATCCTGGT
GATGTATGTATCTTTGATGTGCTTTGTAAAGCCAAGAATATCAGTTTCTA
CTGTTACGGAGGTACACTATAATCAAGTAATCAGGACCGAATCTCACGAC
CATAAATACGCAACTGTTCCTATTAATACCATGAACACCCAGGCAACACC
AAAAACTCATGAACCAAAAAACCATACGAGGCCTGGCCTACCCTATGATA
CAAACACCGACCGTGAAAATAATATAATATAATATAATACCCAATCGTTC
CGGCCTATTTTACTTTGCTAAGTTAAAATTTGTGATGAATTTGGACCTGT
TTTTCTATGGTCCTCCGCAATAGTAAACGTGCTCCCTTCTCCCCTGCGCG
CGCCGTAGTTCCGTCTCGCTGGAACTGTTGTGCCCCGAACGATCAAAACA
TCTCGCCATGTATTAGAAAAGGGATTAAAGGCTTGGTCGTACTTCGAGTG
ATGATGGGAGGACTAATACATATGTGCCACGGGGACGGCCCCTCTCCTCT
ACACTCTCAACACACTTACTGTATGACTGGTCCCGGTCCACGTTAAGCTG
GAATCGGGTATTCATGTTCTGAGAAAGTAGAGATCATCGTTAGGCTGCAC
TCTCCGCCCGAAGCTCAGCGCAAAGATTTTTCCTTTGCAGTGTAGAATCC
GAGAAATCGGCGAGCTGCGGGAGTGCCGAACCCAATGCATTCAAGATAAT
GTATAGTATAACATTTGAATGGTATACGATAAAAACCCAAGGTAAGAATT
TACCGGGGATAAGACATATAGTATATAATGTATAGTATAGTATTAATAGT
ATGCGATAAAAACCCTAGGTATGAATGTACCGGGGATAATATAGATAGTA
TATAATGTATAGTACAATATTAATAGTATACGATAAAAACCCAAGGTAAA
AATGTACCGGGGATAATATCTATATAGTATATAATGTACAGTAAAATAAT
AGTATACGATAAAAACACGACGTAAGAATGTGCCGGGGATACTATATCTA
GTATATAATGTATAGTATCATATTAATAGTATACGATAAAAACCCAAGGT
AAGAATGTACCGGGGATAATATATAGTACGTAATGTATTGTTCTATAGTA
TACGATAAGTACCCAAGGTAAGAATGCACCGGGGATAAGAGATATATAGT
ATAGTACCAGGTATGCAGTAGTATATTATAAGAGAGAGGAGATGATTGAT
CCTTTGTGGCCACAGACGGACCTATCTCGGATAATCCGACCTACCATTCG
TGCTCCTGTTTGGCTTTCCCTGAATTCTTCGATCTTGTGACGACGGCCTG
ATTTCGAAATCTCAGTTACTGTGGTGGGATACCATCATCGTCATCCTCAT
CGCCATCATTATCAGTTAGCATCATTGTGCCCAGCATCGCCGCGATCATC
ATCATCGCCAACAATGATCTCGAGCTCTAAATAGCGCCATTTGCGGAGGT
AGACAGAATTACGGGGGGACCACAGTTAACAGGTATAAATTTGACACAAG
TCTCAACCTAGAAACATCCAAATAGGCTGGAATTGTCAAGATTTGAAGGT
CGATGTTCTTGTGTATGGCCATATCTCGTGTCTTCTTTTGTTTTCACGAG
GTTTTGGTTGTTTGGGTACTCATGGTCGGAATAGTTGGGTATTCATGGTC
ATGATATTTGGTCCTGATTACTTGATTATAGTGTACTTCCGTAATATTAA
TTAGGACGACACATCCTAGCCATGAAGAGATAGATACCCTCTCCAAAAGT
CCCGAGCATGAATACTGTGTACCCAAACGTCTCCAAACCCTCAACACACG
AGAGTGTCTTCTTGGCCATAAATCTCCAAACAAAAAAAGTCTTGCCAAAA
ACTAAACGACGTCCGGGATATTTTGCTAATTTTGACGCTGGGACTTCTGA
CGACGAATTGGCCCTGTTACCTGGTACAATTCTCTGTAATAGCTATAAAC
CAAGGTCACGGTTGAGAACTTTTTCCTTCTTTTGAAACCGGAGCAAAAAC
CAAGAGAACTCTCGGCATTGTTATTTTGTTGTTTCCGCATCGCATCGCAT
CGCATCGCATCGCTCCGCATCGCAGCTGGTAAAACTGCAGGACGAACTGC
ACTCGGTTAACGACGGGCCTTCGCTGGAGATCGTCAGGGCCATCCAGCAA
ATATCCCGGGACATGCACATGATCACCTTTTACCTCCGCCCCATGAAGAT
GGTGGCCACGCAGCTGATCACGGTGAGCGGCGAGGCAACCTAAATATAAA
TCGACAACCGCATCTAGACTCGTCTTTCGACGAGATCATGGGCTCGCTGT
GTCTCTGTGGGCACCCTTGAGGGCTATGGACTCGCTCGCGCTTTTGGTTG
GAACGTCAATACCATGCCGCGAAAGCGCCCGTGAAGGCCGAGATGCTGAG
GTTGCTAGTTTAGCCCTTGTGGAACCGACTCTGTTTTTGCGCCGAATATC
TTGACTACAGTACGGGTATACTATAATAAAGTATATCGCCGTGCATGGAA
GCTTGAACCTGGCAGGTTGGTTTATCAACATCTTCCCCACCGCGGCTGTG
AACAAAGCACCGTTATTATAGCAAAACGTTGTAGAGATGGAGGTCTTCAC
TATTATTTTCAAGTTTCTTGTGGCAAGACTTTAATTGTACCAATGTACTT
TTTAATTTTAAGACCTTACTTGATTTATAGAATCAAGTTTTATTTTTGTT
TTTCCTTTTAGGACTAAACATCCATTAAAATAGCAATCAGGGAGGTACAC
GAGTCAGTAATCAGGACCAGATCTCACGACCATGAATACCCAACTATTAA
TATTCCAACCATTTAAACCAAAACAATCAAAATCTCATAAAAAAAAACAA
AATGCACGAGATATGGCCATACAAAATAACATCCACCTTGAAATCTCGAT
AATTCAGCCTATTTTGATTTTTCTAGGTTGAAATTTGTGACAAATTTGGC
CCTGTTAACTATGGGCTCCCGTAAGATTAGCATGTACGGCGAGGGTAGGA
GTAGAGTAGCCACCGTCAGATCGATCGCGGCTCGGCGCCAAACACGCTGA
GGGCAGGTGACACTTACCTTGACATCGAATGCGCCTGCTCTTCTGGAAAA
TAAAGATTTCAGAATCATGGAGCGTGCGAGCGTTGGGGTCCTACCTTTTC
AAGAGGGAAGATGGTCCAAGCTACACTGGGTCCTATGGAGGCTGGCTCAC
TTTGTTGCACGTGATGCTACGGTGTCGTATCATGTATGATGCTATATGGT
TATGTTATCACACAGGACAGGAGTCTTTGTCCTGAGCTATATCCTGGTGA
TGTATCTTTGATGCGCTTTTTTGAGCGAAGAAGTTTACACGCTCCTCGCC
GCGGTCCGGGTGAAAGGCAAGGGCAAATAAAACCCTGCCAGACTACTGAA
CGAACCCAATGCATGCTTTCGCGATAAAATCCCGAGCGGGTGGTCGGTCC
CTCGTGACGAAAGCCGGGTTTCGGACAAGGCCGATCGATCAAATATGAGG
AGCACGGGTTATATATATCTGTCATGTCTAGACATGGCGTTTTTTTGTTC
GGTGTACTATTAATATTAATAGTACAATACAGTAGTAGGGGTGCTGGATC
TCACTTGGTCCTGTGCCTTCATGTGACCACGAGCGGGATCGGGATCGGTA
TGTGTAAGCATTTTTACACTTTGCCAGTAGTGGCGGGCGGGCGGGCGGGC
CGGTCGGTTGTATGTGTGATGACCAAAAAACAAAAACAAAAACCAAACAC
ACGCGCGTTAACTTGTCCCACACAAATTGTTTTCGCCACTTAGTTTGGCG
GCATTCGACGAAGGAAGCGACGAAGCCCCCCCCCCCTGCGGGGGCAAAAT
AATTACTACTATTAATAGTGGACTTCGTCCCTGATGACAATACACTTGGA
TGGTATTTCGCGTCCACAGCTATAAACGAAAAACTCGCGACCGATGCCGC
CCGCCGCAGGACTTGCCCGGGAGCGACGCTGACTTGAAGAGGCATCTGGA
AGACGTGAGGTAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13264:671..5983+

>mRNA_S-dermatodea_contig13264.1939.1 ID=mRNA_S-dermatodea_contig13264.1939.1|Name=mRNA_S-dermatodea_contig13264.1939.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig13264:671..5983+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGATAGCATCGTGGACGACGTCTTCCCCATCATGCAGCACTTCCAGAC
AATGATGGATAGCATCGTGGACGACGTCTTCCCCATCATGCAGCACTTCC
AGACAATGCTGGTAAAACTGCAGGACGAACTGCACTCGGTTAACGACGGG
CCTTCGCTGGAGATCGTCAGGGCCATCCAGCAAATATCCCGGGACATGCA
CATGATCACCTTTTACCTCCGCCCCATGAAGATGGTGGCCACGCAGCTGA
TCACGCTGGTAAAACTGCAGGACGAACTGCACTCGGTTAACGACGGGCCT
TCGCTGGAGATCGTCAGGGCCATCCAGCAAATATCCCGGGACATGCACAT
GATCACCTTTTACCTCCGCCCCATGAAGATGGTGGCCACGCAGCTGATCA
CGGACTTGCCCGGGAGCGACGCTGACTTGAAGAGGCATCTGGAAGACGTG
AGGTAGGACTTGCCCGGGAGCGACGCTGACTTGAAGAGGCATCTGGAAGA
CGTGAGGTAG
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