mRNA_S-dermatodea_contig13259.1936.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13259.1936.1
Unique NamemRNA_S-dermatodea_contig13259.1936.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Match: A0A6H5K4C1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4C1_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 3.600e-37
Identity = 72/111 (64.86%), Postives = 84/111 (75.68%), Query Frame = 3 
Query:  192 RTLTAVGGDGRDGESWCGHELLNTVTTEWVEDHLHDPE-VALVDIRGRVNKQREEGSDYFSTTYEGLKEDYLDAHIPGAVFVDWTKARAAAHDERLPRRTQQSITNTASFL 521
            R+LTAV      GESWCGHELLNTVTT WVEDHL DPE VALVDIRG+V K R+EGSD+FST YEG++ DYLDAHIPGAVFVDWTK  A   +  +P +    +T+  SF+
Sbjct:   63 RSLTAVMATAGAGESWCGHELLNTVTTAWVEDHLGDPEPVALVDIRGQVVKHRDEGSDFFSTRYEGMEADYLDAHIPGAVFVDWTKDIAHTDENGVPAQ----LTDRESFV 169
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BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Match: A0A835Z9V6_9STRA (Sulfurtransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V6_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.110e-26
Identity = 53/94 (56.38%), Postives = 63/94 (67.02%), Query Frame = 3 
Query:  198 LTAVGGDGRDGESWCGHELLNTVTTEWVEDHLHDPEVALVDIRGRVNKQREEGSDYFSTTYEGLKEDYLDAHIPGAVFVDWTKARAAAHDERLP 479
            L A  G G D   WC HEL N VTTEW+++H+ D E+A+VDIRG V K +E GSD+ ST YEGL EDYL+ HIP AVF DWTK  A      +P
Sbjct:   38 LAAAAGSGSD--RWCNHELRNVVTTEWLQEHMFDAELAIVDIRGAVKKGQEPGSDFVSTVYEGLHEDYLELHIPNAVFADWTKDIAGRDANGVP 129
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BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Match: A0A1N6HLB2_9BACT (Rhodanese-like domain-containing protein n=1 Tax=Singulisphaera sp. GP187 TaxID=1882752 RepID=A0A1N6HLB2_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 2.940e-14
Identity = 36/68 (52.94%), Postives = 48/68 (70.59%), Query Frame = 3 
Query:  246 HELLNTVTTEWVEDHLHDPEVALVDIRGRVN-KQREEGSDYFSTTYEGLKEDYLDAHIPGAVFVDWTK 446
            H+LL  VTT+W+EDH+HDP V ++D+RG V  +  E G +    TY G  ++YL  HIPGAV+VDWTK
Sbjct:    3 HDLL--VTTDWLEDHIHDPNVRVIDVRGSVTTRPLEPGVE--EATYRGAIDEYLAGHIPGAVYVDWTK 66
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BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Match: L0DPZ6_SINAD (Rhodanese-related sulfurtransferase n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) TaxID=886293 RepID=L0DPZ6_SINAD)

HSP 1 Score: 72.0 bits (175), Expect = 1.690e-11
Identity = 37/68 (54.41%), Postives = 47/68 (69.12%), Query Frame = 3 
Query:  246 HELLNTVTTEWVEDHLHDPEVALVDIRGRVN-KQREEGSDYFSTTYEGLKEDYLDAHIPGAVFVDWTK 446
            H+LL  VTTEW+E HL DP V +VD+RG V  +  E G +    TY G  ++YL +HIPGAV+VDWTK
Sbjct:    3 HDLL--VTTEWLEAHLDDPNVRVVDVRGSVTTRPLEPGVE--EATYRGAIDEYLASHIPGAVYVDWTK 66
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BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Match: UPI00064C0A84 (sulfurtransferase n=1 Tax=Rubrobacter aplysinae TaxID=909625 RepID=UPI00064C0A84)

HSP 1 Score: 71.2 bits (173), Expect = 3.540e-11
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 3 
Query:  264 VTTEWVEDHLHDPEVALVDIRGRVNKQ-REEGSDYFSTTYEGLKEDYLDAHIPGAVFVDWT 443
            V+T W+ +HL DP++ +VDIRG V+K  RE+GS      Y G  E+Y +AH+PGAVFVDWT
Sbjct:   11 VSTSWLAEHLDDPDLRVVDIRGYVDKHTREDGSQ--EAIYRGAPEEYAEAHVPGAVFVDWT 69
[Close]
BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Match: A0A7S2XZ51_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ51_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 7.110e-11
Identity = 39/79 (49.37%), Postives = 49/79 (62.03%), Query Frame = 3 
Query:  219 GRDGESWCGHELLNT--VTTEWVEDHLHDPEVALVDIRGRVNKQR-EEGSDYFSTTYEGLKEDYLDAHIPGAVFVDWTK 446
            GR G   C     ++  VTTEW+EDH+ D  V +VDIRG+V K    + S      YE L +DY ++HIPGAVFVDWTK
Sbjct:   51 GRSGNIPCRSAAFDSPVVTTEWLEDHIDD--VKVVDIRGKVRKLGGTDESGLLLHQYEALDKDYWESHIPGAVFVDWTK 127
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BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Match: A0A6V1S6S1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1S6S1_HETAK)

HSP 1 Score: 70.5 bits (171), Expect = 1.110e-10
Identity = 32/64 (50.00%), Postives = 44/64 (68.75%), Query Frame = 3 
Query:  264 VTTEWVEDHLHDPEVALVDIRGRVNKQREEGSDYFSTT---YEGLKEDYLDAHIPGAVFVDWTK 446
            V+TEW+EDHL D ++ ++D+RG V K    G D +      Y GL  DYL++HIPGA++VDWTK
Sbjct:   74 VSTEWLEDHLGDEDLVIIDVRGEVAKTG--GFDEYGAINHEYRGLYNDYLESHIPGAIYVDWTK 135
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BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Match: A0A535RI78_9CHLR (Sulfurtransferase n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535RI78_9CHLR)

HSP 1 Score: 69.3 bits (168), Expect = 1.630e-10
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 3 
Query:  264 VTTEWVEDHLHDPEVALVDIRGRVNKQREEGSDYFSTTYEGLKEDYLDAHIPGAVFVDWTK 446
            V T W+ +HLHDP V +VD+RG V    ++G  Y    Y G +++Y  AHIPGAV++DWT+
Sbjct:    8 VETTWLAEHLHDPNVRIVDMRGYVRTTEQDGIQY--ARYVGARDEYEQAHIPGAVYIDWTR 66
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BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Match: A0A5A5TD69_9CHLR (Sulfurtransferase n=1 Tax=Dictyobacter arantiisoli TaxID=2014874 RepID=A0A5A5TD69_9CHLR)

HSP 1 Score: 69.3 bits (168), Expect = 1.650e-10
Identity = 30/61 (49.18%), Postives = 42/61 (68.85%), Query Frame = 3 
Query:  264 VTTEWVEDHLHDPEVALVDIRGRVNKQREEGSDYFSTTYEGLKEDYLDAHIPGAVFVDWTK 446
            V T+W+E+HLHDP V +VD+RG V    ++G+      Y G  E+Y  AHIPGAV++DWT+
Sbjct:   11 VETDWLENHLHDPAVRMVDMRGYVRTVVKDGAQ--EAVYVGAPEEYAQAHIPGAVYIDWTQ 69
[Close]
BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Match: A0A455SST5_9CHLR (Sulfurtransferase n=2 Tax=Thermosporothrix TaxID=768650 RepID=A0A455SST5_9CHLR)

HSP 1 Score: 67.8 bits (164), Expect = 6.080e-10
Identity = 27/63 (42.86%), Postives = 42/63 (66.67%), Query Frame = 3 
Query:  264 VTTEWVEDHLHDPEVALVDIRG---RVNKQREEGSDYFSTTYEGLKEDYLDAHIPGAVFVDWT 443
            V T W+E+HLHDP++ +VD+RG    V ++ E+G       Y G +++Y   HIPGAV++DW+
Sbjct:   11 VETSWLEEHLHDPQIRIVDMRGYVRTVERENEQGQKVQDALYVGARDEYEQEHIPGAVYIDWS 73
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13259.1936.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K4C1_9PHAE3.600e-3764.86Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z9V6_9STRA1.110e-2656.38Sulfurtransferase n=1 Tax=Tribonema minus TaxID=30... [more]
A0A1N6HLB2_9BACT2.940e-1452.94Rhodanese-like domain-containing protein n=1 Tax=S... [more]
L0DPZ6_SINAD1.690e-1154.41Rhodanese-related sulfurtransferase n=1 Tax=Singul... [more]
UPI00064C0A843.540e-1154.10sulfurtransferase n=1 Tax=Rubrobacter aplysinae Ta... [more]
A0A7S2XZ51_9STRA7.110e-1149.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A6V1S6S1_HETAK1.110e-1050.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A535RI78_9CHLR1.630e-1047.54Sulfurtransferase n=2 Tax=Chloroflexi bacterium Ta... [more]
A0A5A5TD69_9CHLR1.650e-1049.18Sulfurtransferase n=1 Tax=Dictyobacter arantiisoli... [more]
A0A455SST5_9CHLR6.080e-1042.86Sulfurtransferase n=2 Tax=Thermosporothrix TaxID=7... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13259contigS-dermatodea_contig13259:5263..6327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue2.2e-23
Seed eggNOG ortholog2880.D8LKK5
Preferred nameMST
KEGG rclassRC00214
KEGG koko:K01011
KEGG ReactionR01931,R03105,R03106
KEGG Pathwayko00270,ko00920,ko01100,ko01120,ko04122,map00270,map00920,map01100,map01120,map04122
EggNOG free text desc.thiosulfate sulfurtransferase activity
EggNOG OGsCOG2897@1,KOG1529@2759
EC2.8.1.1,2.8.1.2
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorysignal peptide
Exons2
Model size640
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13259.1936.1prot_S-dermatodea_contig13259.1936.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13259 5286..6325 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924279.8138444-UTR-S-dermatodea_contig13259:5262..52851622924279.8138444-UTR-S-dermatodea_contig13259:5262..5285Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13259 5263..5285 +
1694079146.8103192-UTR-S-dermatodea_contig13259:5262..52851694079146.8103192-UTR-S-dermatodea_contig13259:5262..5285Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13259 5263..5285 +
1622924279.8475697-UTR-S-dermatodea_contig13259:6325..63271622924279.8475697-UTR-S-dermatodea_contig13259:6325..6327Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13259 6326..6327 +
1694079146.8524241-UTR-S-dermatodea_contig13259:6325..63271694079146.8524241-UTR-S-dermatodea_contig13259:6325..6327Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13259 6326..6327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924279.8233912-CDS-S-dermatodea_contig13259:5285..55671622924279.8233912-CDS-S-dermatodea_contig13259:5285..5567Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13259 5286..5567 +
1694079146.831595-CDS-S-dermatodea_contig13259:5285..55671694079146.831595-CDS-S-dermatodea_contig13259:5285..5567Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13259 5286..5567 +
1622924279.8338914-CDS-S-dermatodea_contig13259:5992..63251622924279.8338914-CDS-S-dermatodea_contig13259:5992..6325Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13259 5993..6325 +
1694079146.842476-CDS-S-dermatodea_contig13259:5992..63251694079146.842476-CDS-S-dermatodea_contig13259:5992..6325Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13259 5993..6325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13259.1936.1

>prot_S-dermatodea_contig13259.1936.1 ID=prot_S-dermatodea_contig13259.1936.1|Name=mRNA_S-dermatodea_contig13259.1936.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=205bp
MRAQTWTLAAATTSCRCLLSAASSTTRAFVHFPASCRSTASVPIRSAACS
FRSKPTRTLTAVGGDGRDGESWCGHELLNTVTTEWVEDHLHDPEVALVDI
RGRVNKQREEGSDYFSTTYEGLKEDYLDAHIPGAVFVDWTKARAAAHDER
LPRRTQQSITNTASFLAFPTARSSQSPDRREAEAGNTRVARVSRQIMQRI
FHIR*
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mRNA from alignment at S-dermatodea_contig13259:5263..6327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13259.1936.1 ID=mRNA_S-dermatodea_contig13259.1936.1|Name=mRNA_S-dermatodea_contig13259.1936.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1065bp|location=Sequence derived from alignment at S-dermatodea_contig13259:5263..6327+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTGAGGCAGCTTGCAGGCCGACATGAGGGCCCAAACATGGACCCTAGCC
GCAGCAACAACCTCCTGCAGATGCCTCTTGTCGGCAGCATCCTCCACCAC
AAGAGCTTTCGTGCACTTCCCAGCATCATGCAGATCTACGGCATCTGTTC
CTATTAGGTCTGCTGCCTGTTCATTCCGCTCCAAGCCCACGAGGACGCTG
ACTGCGGTGGGAGGGGACGGTCGGGACGGCGAGTCTTGGTGTGGGCACGA
GTTGCTCAACACTGTCACCACGGAGTGGGTCGAGGACCACTTGCATGATC
CAGAGGTGGGTCGTTGCGCTGGTTCTTAGCTGGCGTTTTTTTAACCCTGG
GCGGGACTGTCAGCTTCCTTGTTTGAATCTCGCCGCTCGAAGGTGGCGCA
TGCCTCATGGCTCATGGCTCATGACATAGAGCTGTAGAGCACATGTCACG
CTGCAAAACTGACTAGGACGCGGTTACTATTTACACAAATCCATGTGGTA
TCACACATGAACAAGGGTTGCCGCCATGATCGTTACCACCCGTCAACGCT
GCTGTAGTTCCTATGCTTACACAGCCCAACACGACGGTCAATGCAGAGTT
TTAGTCAATTTATGTCAACGCCACCCTACCTCAAGCTTGCGATGACTCGG
CGTGGCAGGACAAACGAGCAGCCAGCTATAAACTTCGAGAACACGTAACG
CTTCCCGTCTTGCCGGAATCCATGGCACAGGTAGCTCTGGTGGACATCCG
AGGGAGGGTTAACAAGCAGCGCGAGGAAGGGTCGGACTACTTCAGCACAA
CCTACGAGGGCTTGAAGGAAGACTATCTCGACGCGCACATCCCCGGAGCC
GTTTTCGTCGACTGGACAAAGGCGCGTGCGGCCGCCCATGATGAGCGTCT
ACCACGAAGAACGCAACAGAGCATAACGAACACAGCGTCATTTCTCGCGT
TTCCAACGGCTCGTAGCAGCCAGTCACCGGACAGAAGGGAAGCTGAAGCT
GGCAATACCCGAGTGGCACGCGTCTCCCGTCAGATTATGCAGCGCATCTT
CCATATTCGTTGACC
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Coding sequence (CDS) from alignment at S-dermatodea_contig13259:5263..6327+

>mRNA_S-dermatodea_contig13259.1936.1 ID=mRNA_S-dermatodea_contig13259.1936.1|Name=mRNA_S-dermatodea_contig13259.1936.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at S-dermatodea_contig13259:5263..6327+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGGCCCAAACATGGACCCTAGCCGCAGCAACAACCTCCTGCAGATG
CCTCTTGTCGGCAGCATCCTCCACCACAAGAGCTTTCGTGCACTTCCCAG
CATCATGCAGATCTACGGCATCTGTTCCTATTAGGTCTGCTGCCTGTTCA
TTCCGCTCCAAGCCCACGAGGACGCTGACTGCGGTGGGAGGGGACGGTCG
GGACGGCGAGTCTTGGTGTGGGCACGAGTTGCTCAACACTGTCACCACGG
AGTGGGTCGAGGACCACTTGCATGATCCAGAGATGAGGGCCCAAACATGG
ACCCTAGCCGCAGCAACAACCTCCTGCAGATGCCTCTTGTCGGCAGCATC
CTCCACCACAAGAGCTTTCGTGCACTTCCCAGCATCATGCAGATCTACGG
CATCTGTTCCTATTAGGTCTGCTGCCTGTTCATTCCGCTCCAAGCCCACG
AGGACGCTGACTGCGGTGGGAGGGGACGGTCGGGACGGCGAGTCTTGGTG
TGGGCACGAGTTGCTCAACACTGTCACCACGGAGTGGGTCGAGGACCACT
TGCATGATCCAGAGGTAGCTCTGGTGGACATCCGAGGGAGGGTTAACAAG
CAGCGCGAGGAAGGGTCGGACTACTTCAGCACAACCTACGAGGGCTTGAA
GGAAGACTATCTCGACGCGCACATCCCCGGAGCCGTTTTCGTCGACTGGA
CAAAGGCGCGTGCGGCCGCCCATGATGAGCGTCTACCACGAAGAACGCAA
CAGAGCATAACGAACACAGCGTCATTTCTCGCGTTTCCAACGGCTCGTAG
CAGCCAGTCACCGGACAGAAGGGAAGCTGAAGCTGGCAATACCCGAGTGG
CACGCGTCTCCCGTCAGATTATGCAGCGCATCTTCCATATTCGTTGAGTA
GCTCTGGTGGACATCCGAGGGAGGGTTAACAAGCAGCGCGAGGAAGGGTC
GGACTACTTCAGCACAACCTACGAGGGCTTGAAGGAAGACTATCTCGACG
CGCACATCCCCGGAGCCGTTTTCGTCGACTGGACAAAGGCGCGTGCGGCC
GCCCATGATGAGCGTCTACCACGAAGAACGCAACAGAGCATAACGAACAC
AGCGTCATTTCTCGCGTTTCCAACGGCTCGTAGCAGCCAGTCACCGGACA
GAAGGGAAGCTGAAGCTGGCAATACCCGAGTGGCACGCGTCTCCCGTCAG
ATTATGCAGCGCATCTTCCATATTCGTTGA
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