mRNA_S-dermatodea_contig13223.1922.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13223.1922.1
Unique NamemRNA_S-dermatodea_contig13223.1922.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13223.1922.1 vs. uniprot
Match: D7FVM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM3_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.380e-26
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   34 AADSDRGESREVGKPVKYKYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQQEEASPVSVGAG 252
            A D +   +RE GKPVKY+YRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQ+ E +PV VGAG
Sbjct:  269 AVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETTPVPVGAG 341
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BLAST of mRNA_S-dermatodea_contig13223.1922.1 vs. uniprot
Match: A0A6H5JCF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCF1_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.140e-25
Identity = 59/73 (80.82%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   34 AADSDRGESREVGKPVKYKYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQQEEASPVSVGAG 252
            A D +   +RE GKPVKY+YRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQ+ E +PV VGAG
Sbjct:  670 AVDGEENLAREPGKPVKYRYRQEAARSRKRTRGRFVSEKAPAFVSITELMALRRAERERQQKAETTPVPVGAG 742
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13223.1922.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVM3_ECTSI1.380e-2680.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCF1_9PHAE1.140e-2580.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13223contigS-dermatodea_contig13223:5282..5536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size256
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924278.8855348-CDS-S-dermatodea_contig13223:5281..55361622924278.8855348-CDS-S-dermatodea_contig13223:5281..5536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13223 5282..5536 +
1694079146.1731026-CDS-S-dermatodea_contig13223:5281..55361694079146.1731026-CDS-S-dermatodea_contig13223:5281..5536Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13223 5282..5536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13223.1922.1prot_S-dermatodea_contig13223.1922.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13223 5282..5536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13223.1922.1

>prot_S-dermatodea_contig13223.1922.1 ID=prot_S-dermatodea_contig13223.1922.1|Name=mRNA_S-dermatodea_contig13223.1922.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=85bp
LAAEGGAPSAHAADSDRGESREVGKPVKYKYRQEAARSRKRTRGRFVSEK
APAFVSITELMALRRAERERQQQEEASPVSVGAG*
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mRNA from alignment at S-dermatodea_contig13223:5282..5536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13223.1922.1 ID=mRNA_S-dermatodea_contig13223.1922.1|Name=mRNA_S-dermatodea_contig13223.1922.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at S-dermatodea_contig13223:5282..5536+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGCGGCGGAAGGGGGTGCCCCTTCGGCTCATGCGGCGGACAGCGATAG
GGGGGAAAGCCGGGAGGTCGGGAAACCGGTCAAGTACAAGTACCGCCAGG
AGGCGGCGCGTTCGAGGAAGCGCACCCGGGGGCGGTTCGTGAGCGAGAAA
GCTCCGGCGTTCGTTTCGATCACCGAGCTGATGGCTCTCCGTCGTGCTGA
GCGCGAGCGGCAGCAGCAGGAGGAGGCTTCGCCTGTATCTGTTGGGGCTG
GGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13223:5282..5536+

>mRNA_S-dermatodea_contig13223.1922.1 ID=mRNA_S-dermatodea_contig13223.1922.1|Name=mRNA_S-dermatodea_contig13223.1922.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at S-dermatodea_contig13223:5282..5536+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGGCGGCGGAAGGGGGTGCCCCTTCGGCTCATGCGGCGGACAGCGATAG
GGGGGAAAGCCGGGAGGTCGGGAAACCGGTCAAGTACAAGTACCGCCAGG
AGGCGGCGCGTTCGAGGAAGCGCACCCGGGGGCGGTTCGTGAGCGAGAAA
GCTCCGGCGTTCGTTTCGATCACCGAGCTGATGGCTCTCCGTCGTGCTGA
GCGCGAGCGGCAGCAGCAGGAGGAGGCTTCGCCTGTATCTGTTGGGGCTG
GGTGACTGGCGGCGGAAGGGGGTGCCCCTTCGGCTCATGCGGCGGACAGC
GATAGGGGGGAAAGCCGGGAGGTCGGGAAACCGGTCAAGTACAAGTACCG
CCAGGAGGCGGCGCGTTCGAGGAAGCGCACCCGGGGGCGGTTCGTGAGCG
AGAAAGCTCCGGCGTTCGTTTCGATCACCGAGCTGATGGCTCTCCGTCGT
GCTGAGCGCGAGCGGCAGCAGCAGGAGGAGGCTTCGCCTGTATCTGTTGG
GGCTGGGTGA
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