prot_S-dermatodea_contig13219.1916.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig13219.1916.1
Unique Nameprot_S-dermatodea_contig13219.1916.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length105
Homology
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BLAST of mRNA_S-dermatodea_contig13219.1916.1 vs. uniprot
Match: D7FPN4_ECTSI (acidPPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPN4_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 1.670e-19
Identity = 45/95 (47.37%), Postives = 65/95 (68.42%), Query Frame = 0 
Query:   13 PRRSRRRRPWLRAAFVVLVAIEVAIFVVVDEFSPVFDFDIPSVTAAA-DGTT-VLGNNPDLMYPIKLSGSLCHPGELIACVASDASAGTLATVCC 105
            P+R RRR+PWLR  F V + +E  +   V+E+SPV+DF++ SVT  A DGTT V+G+NPDL +P+ L+G  C   ++ ACV  + +   L+TVCC
Sbjct:   46 PKR-RRRQPWLRGLFTVFLVVEALVLYAVNEYSPVYDFEVLSVTTTAEDGTTTVVGDNPDLSFPLSLAGEKCGVSDMAACVTEEPTPAALSTVCC 139
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13219.1916.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FPN4_ECTSI1.670e-1947.37acidPPc domain-containing protein n=1 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..105
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 22..41
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..21
NoneNo IPR availableTMHMMTMhelixcoord: 21..40

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13219contigS-dermatodea_contig13219:339..3669 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13219.1916.1mRNA_S-dermatodea_contig13219.1916.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig13219 339..3671 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig13219.1916.1 ID=prot_S-dermatodea_contig13219.1916.1|Name=mRNA_S-dermatodea_contig13219.1916.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=105bp
TINGEAYYYGDSPRRSRRRRPWLRAAFVVLVAIEVAIFVVVDEFSPVFDF
DIPSVTAAADGTTVLGNNPDLMYPIKLSGSLCHPGELIACVASDASAGTL
ATVCC
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