mRNA_S-dermatodea_contig13214.1915.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13214.1915.1
Unique NamemRNA_S-dermatodea_contig13214.1915.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig13214.1915.1 vs. uniprot
Match: D7FRU4_ECTSI (BZIP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRU4_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 3.460e-22
Identity = 74/110 (67.27%), Postives = 84/110 (76.36%), Query Frame = 1 
Query:   13 RREVLGELENRADSLSRSLTECRDENVGLRREIASLREQNSFLRGMLSAAGRAIDLPPLLPTCTEG----RYRGGXXXXXXXXXXXXXASAIIGAVGTALAVVSCVALSA 330
            R+EVL ELENRAD+LS+SL   RDE   L++EIASLREQNSFLRGMLSA G AIDLPP++P+         +R G   XXXXXXXXXX   IIGAVGT LAV+SCVALSA
Sbjct:  330 RKEVLSELENRADTLSKSLAASRDETASLKQEIASLREQNSFLRGMLSAHGSAIDLPPIMPSGASSDSLRSHRNGGGRXXXXXXXXXXX--IIGAVGTGLAVISCVALSA 437
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13214.1915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRU4_ECTSI3.460e-2267.27BZIP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13214contigS-dermatodea_contig13214:362..901 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBasic leucine zipper domain protein
Ec32 orthologEc-25_000410.1
Exons1
Model size540
Cds size540
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924278.376635-CDS-S-dermatodea_contig13214:361..9011622924278.376635-CDS-S-dermatodea_contig13214:361..901Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13214 362..901 +
1694079145.7753808-CDS-S-dermatodea_contig13214:361..9011694079145.7753808-CDS-S-dermatodea_contig13214:361..901Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13214 362..901 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13214.1915.1prot_S-dermatodea_contig13214.1915.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13214 362..901 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13214.1915.1

>prot_S-dermatodea_contig13214.1915.1 ID=prot_S-dermatodea_contig13214.1915.1|Name=mRNA_S-dermatodea_contig13214.1915.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=180bp
SNRQRREVLGELENRADSLSRSLTECRDENVGLRREIASLREQNSFLRGM
LSAAGRAIDLPPLLPTCTEGRYRGGGSGGGGGSTTTGAASAIIGAVGTAL
AVVSCVALSAAGFGVGVGGGDGDRAGGMTGGMAGGNGGEGGRAGGRRMLL
SIDDYSLASEAEQSTAGLSGGGGGSGFVLG
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mRNA from alignment at S-dermatodea_contig13214:362..901+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13214.1915.1 ID=mRNA_S-dermatodea_contig13214.1915.1|Name=mRNA_S-dermatodea_contig13214.1915.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=540bp|location=Sequence derived from alignment at S-dermatodea_contig13214:362..901+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAAACCGGCAGCGGAGGGAAGTCCTGGGCGAGCTGGAGAACCGCGCGGA
CTCCCTTTCGAGGAGTCTTACCGAATGCCGCGACGAAAACGTGGGCCTGA
GGAGAGAGATCGCGTCCCTGCGGGAGCAGAACTCGTTCCTGAGGGGCATG
CTCTCGGCCGCCGGCCGCGCCATCGACCTGCCGCCCCTCCTGCCCACCTG
CACCGAGGGCCGATACCGCGGCGGCGGCAGCGGCGGCGGTGGTGGCAGCA
CCACGACCGGGGCGGCGAGCGCGATCATCGGCGCCGTGGGCACGGCATTG
GCCGTCGTGAGCTGCGTGGCCCTTTCCGCCGCCGGGTTCGGAGTCGGCGT
CGGCGGAGGTGACGGCGATCGCGCGGGCGGGATGACGGGCGGGATGGCGG
GCGGGAACGGGGGCGAGGGCGGCAGGGCGGGGGGGCGGAGGATGCTCCTG
TCGATCGACGACTACAGCCTCGCTAGCGAGGCCGAGCAATCAACAGCCGG
TCTCAGCGGCGGTGGCGGTGGCAGCGGCTTCGTGCTCGGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13214:362..901+

>mRNA_S-dermatodea_contig13214.1915.1 ID=mRNA_S-dermatodea_contig13214.1915.1|Name=mRNA_S-dermatodea_contig13214.1915.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1080bp|location=Sequence derived from alignment at S-dermatodea_contig13214:362..901+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCAAACCGGCAGCGGAGGGAAGTCCTGGGCGAGCTGGAGAACCGCGCGGA
CTCCCTTTCGAGGAGTCTTACCGAATGCCGCGACGAAAACGTGGGCCTGA
GGAGAGAGATCGCGTCCCTGCGGGAGCAGAACTCGTTCCTGAGGGGCATG
CTCTCGGCCGCCGGCCGCGCCATCGACCTGCCGCCCCTCCTGCCCACCTG
CACCGAGGGCCGATACCGCGGCGGCGGCAGCGGCGGCGGTGGTGGCAGCA
CCACGACCGGGGCGGCGAGCGCGATCATCGGCGCCGTGGGCACGGCATTG
GCCGTCGTGAGCTGCGTGGCCCTTTCCGCCGCCGGGTTCGGAGTCGGCGT
CGGCGGAGGTGACGGCGATCGCGCGGGCGGGATGACGGGCGGGATGGCGG
GCGGGAACGGGGGCGAGGGCGGCAGGGCGGGGGGGCGGAGGATGCTCCTG
TCGATCGACGACTACAGCCTCGCTAGCGAGGCCGAGCAATCAACAGCCGG
TCTCAGCGGCGGTGGCGGTGGCAGCGGCTTCGTGCTCGGGTCAAACCGGC
AGCGGAGGGAAGTCCTGGGCGAGCTGGAGAACCGCGCGGACTCCCTTTCG
AGGAGTCTTACCGAATGCCGCGACGAAAACGTGGGCCTGAGGAGAGAGAT
CGCGTCCCTGCGGGAGCAGAACTCGTTCCTGAGGGGCATGCTCTCGGCCG
CCGGCCGCGCCATCGACCTGCCGCCCCTCCTGCCCACCTGCACCGAGGGC
CGATACCGCGGCGGCGGCAGCGGCGGCGGTGGTGGCAGCACCACGACCGG
GGCGGCGAGCGCGATCATCGGCGCCGTGGGCACGGCATTGGCCGTCGTGA
GCTGCGTGGCCCTTTCCGCCGCCGGGTTCGGAGTCGGCGTCGGCGGAGGT
GACGGCGATCGCGCGGGCGGGATGACGGGCGGGATGGCGGGCGGGAACGG
GGGCGAGGGCGGCAGGGCGGGGGGGCGGAGGATGCTCCTGTCGATCGACG
ACTACAGCCTCGCTAGCGAGGCCGAGCAATCAACAGCCGGTCTCAGCGGC
GGTGGCGGTGGCAGCGGCTTCGTGCTCGGG
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