mRNA_S-dermatodea_contig13209.1912.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13209.1912.1
Unique NamemRNA_S-dermatodea_contig13209.1912.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13209.1912.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13209contigS-dermatodea_contig13209:2885..3774 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size403
Cds size390
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13209.1912.1prot_S-dermatodea_contig13209.1912.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13209 2898..3774 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924278.1058555-UTR-S-dermatodea_contig13209:2884..28971622924278.1058555-UTR-S-dermatodea_contig13209:2884..2897Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13209 2885..2897 -
1694079145.577587-UTR-S-dermatodea_contig13209:2884..28971694079145.577587-UTR-S-dermatodea_contig13209:2884..2897Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig13209 2885..2897 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924278.1151395-CDS-S-dermatodea_contig13209:2897..32081622924278.1151395-CDS-S-dermatodea_contig13209:2897..3208Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13209 2898..3208 -
1694079145.5877762-CDS-S-dermatodea_contig13209:2897..32081694079145.5877762-CDS-S-dermatodea_contig13209:2897..3208Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13209 2898..3208 -
1622924278.1257153-CDS-S-dermatodea_contig13209:3695..37741622924278.1257153-CDS-S-dermatodea_contig13209:3695..3774Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13209 3696..3774 -
1694079145.601644-CDS-S-dermatodea_contig13209:3695..37741694079145.601644-CDS-S-dermatodea_contig13209:3695..3774Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13209 3696..3774 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13209.1912.1

>prot_S-dermatodea_contig13209.1912.1 ID=prot_S-dermatodea_contig13209.1912.1|Name=mRNA_S-dermatodea_contig13209.1912.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=130bp
WRGLPTQPSIRAGVGAALADSYLLPEGNWQLCEPDGNWCWQCKYSPYRHV
RAPKRWSWLSSSVKTPSHQECSLSLPELAKSKCAEWLGLPRGCSRLLPGS
LGATCWLVKQPHLILIGPSRNLFTYRPYP*
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mRNA from alignment at S-dermatodea_contig13209:2885..3774-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13209.1912.1 ID=mRNA_S-dermatodea_contig13209.1912.1|Name=mRNA_S-dermatodea_contig13209.1912.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=890bp|location=Sequence derived from alignment at S-dermatodea_contig13209:2885..3774- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGCGAGGGCTTCCGACCCAGCCGTCGATTCGGGCAGGCGTGGGAGCGGC
CTTGGCGGATTCGTATCTGCTTCCCGAAGGTGAGCGCAGAACTCTCCTGC
TCTCCATGTTTGTGCGTATAGACGTTTACTTGTAAATCTCTTGAGTAGGT
AATATTTAGCAGGCAATTTGGCCGTTTCGACTGAAGACATGTTTTTTTTT
TCACGTTTTTCTTAGCGCCCGTGTTGCAAACGTGGTTTTCCACTAATGAA
TACCAAGAAGGCGGCATTATTCTTCATATATCCCATCATACGCCCGAATT
TTCTTTATATTTAGGGAAAAACCCACCGCACCACTGTTCGGCACCATGCG
CCACACGGACCCTTGATCCTCAAATGGCCCCAAGTGCGCTGGGTGCATTA
GTGCCCAGGCTATCTAACAAGACCATGCCCATCGCAATCGGTGCAAAAAC
CAGAGTGCGCGGGTCGCTTGAAAGTTCGCCTCCTAAGGAAAAACCCAACA
AAAATTGAAATCAAGGGGACGCCCACCCAAATGCTTTGTAACGGCTGGTT
TCGCGTAAAAATACAGGAAACTGGCAGCTCTGCGAGCCTGATGGTAACTG
GTGCTGGCAGTGCAAGTACTCTCCATACAGACATGTCCGAGCGCCCAAAC
GTTGGTCATGGCTGAGCAGCAGTGTGAAGACCCCTTCTCATCAAGAATGT
TCGCTCTCGCTCCCTGAGTTGGCCAAATCAAAATGTGCAGAGTGGTTGGG
TCTACCCCGGGGATGCTCCAGGCTGCTCCCTGGGAGCCTCGGAGCAACAT
GCTGGCTTGTGAAACAACCACATTTGATCCTGATTGGCCCCTCGCGGAAC
CTGTTCACCTACCGCCCGTACCCATGATTCCCGACGTAGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13209:2885..3774-

>mRNA_S-dermatodea_contig13209.1912.1 ID=mRNA_S-dermatodea_contig13209.1912.1|Name=mRNA_S-dermatodea_contig13209.1912.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at S-dermatodea_contig13209:2885..3774- (Saccorhiza dermatodea SderLu1190fm monoicous)
TGGCGAGGGCTTCCGACCCAGCCGTCGATTCGGGCAGGCGTGGGAGCGGC
CTTGGCGGATTCGTATCTGCTTCCCGAAGTGGCGAGGGCTTCCGACCCAG
CCGTCGATTCGGGCAGGCGTGGGAGCGGCCTTGGCGGATTCGTATCTGCT
TCCCGAAGGAAACTGGCAGCTCTGCGAGCCTGATGGTAACTGGTGCTGGC
AGTGCAAGTACTCTCCATACAGACATGTCCGAGCGCCCAAACGTTGGTCA
TGGCTGAGCAGCAGTGTGAAGACCCCTTCTCATCAAGAATGTTCGCTCTC
GCTCCCTGAGTTGGCCAAATCAAAATGTGCAGAGTGGTTGGGTCTACCCC
GGGGATGCTCCAGGCTGCTCCCTGGGAGCCTCGGAGCAACATGCTGGCTT
GTGAAACAACCACATTTGATCCTGATTGGCCCCTCGCGGAACCTGTTCAC
CTACCGCCCGTACCCATGAGAAACTGGCAGCTCTGCGAGCCTGATGGTAA
CTGGTGCTGGCAGTGCAAGTACTCTCCATACAGACATGTCCGAGCGCCCA
AACGTTGGTCATGGCTGAGCAGCAGTGTGAAGACCCCTTCTCATCAAGAA
TGTTCGCTCTCGCTCCCTGAGTTGGCCAAATCAAAATGTGCAGAGTGGTT
GGGTCTACCCCGGGGATGCTCCAGGCTGCTCCCTGGGAGCCTCGGAGCAA
CATGCTGGCTTGTGAAACAACCACATTTGATCCTGATTGGCCCCTCGCGG
AACCTGTTCACCTACCGCCCGTACCCATGA
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