prot_S-dermatodea_contig13206.1911.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig13206.1911.1
Unique Nameprot_S-dermatodea_contig13206.1911.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length155
Homology
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BLAST of mRNA_S-dermatodea_contig13206.1911.1 vs. uniprot
Match: A0A6H5LB76_9PHAE (PKD domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB76_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.250e-24
Identity = 70/155 (45.16%), Postives = 85/155 (54.84%), Query Frame = 0 
Query:    1 MHCHVNSHSDTGVMAVGNIVEGQGPNEDPSALAAGTCGTAGVDGFGYNLSVDEAEDRSMTPSPSSSYGTPQPTTVEERDAADGAGIDETDSGSSDSDNSWWVAAVAGAGVGLGVILIGAVLFLKFGKKTRPSHAGAKKLSTVESMDG---ETKAE 152
            MHCHVNSHSDTGVMAV +I  G+GPNEDP ALAAGTCG  GV G+GYNLS D+  +          Y      T EER A  G           D +++WWVA          ++L G +L  KFGK  R + AGA+  +  +   G   ETKAE
Sbjct: 1070 MHCHVNSHSDTGVMAVADIDGGEGPNEDPIALAAGTCGIEGVAGYGYNLSADDTAETDED-----GYDDDASATAEER-ATVGXXXXXXXXXXXDPEDTWWVAXXXXXXXXXXILLCGGLLMSKFGK--RDAVAGARAAAPAKDSGGAADETKAE 1216
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13206.1911.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LB76_9PHAE1.250e-2445.16PKD domain-containing protein n=2 Tax=Ectocarpus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 124..154
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..99
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 100..123
NoneNo IPR availableTMHMMTMhelixcoord: 101..123

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13206contigS-dermatodea_contig13206:4860..6158 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13206.1911.1mRNA_S-dermatodea_contig13206.1911.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig13206 4849..6211 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig13206.1911.1 ID=prot_S-dermatodea_contig13206.1911.1|Name=mRNA_S-dermatodea_contig13206.1911.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=155bp
MHCHVNSHSDTGVMAVGNIVEGQGPNEDPSALAAGTCGTAGVDGFGYNLS
VDEAEDRSMTPSPSSSYGTPQPTTVEERDAADGAGIDETDSGSSDSDNSW
WVAAVAGAGVGLGVILIGAVLFLKFGKKTRPSHAGAKKLSTVESMDGETK
AEVA*
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