mRNA_S-dermatodea_contig13193.1903.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13193.1903.1
Unique NamemRNA_S-dermatodea_contig13193.1903.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Match: D7FT10_ECTSI (Trehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT10_ECTSI)

HSP 1 Score: 368 bits (944), Expect = 5.390e-118
Identity = 173/213 (81.22%), Postives = 189/213 (88.73%), Query Frame = 1
Query:   16 PAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKKWEESPARVIKCDEASVHQKDQFVGHDT--SDFINQLRQISALDGQSKAGSCTSLPKRHVEPEPDSVLYLVCFHLPVTLKKDWKGSWQAGWNESLIAKTEDSVADRIPTHWVGTVSNPDGKEFTEADERAIKQVLLPMKCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 648
            P+ LVEMVTTPEEYPLWRT QPIIVQR+QPHKYIYSLFEGGKFKKWEES ARVIKCDE SVHQ+D+FVGH+T  SD++N  RQ S L+   K  S TSLP+ +VEP PDSVLYLVCFHLP+TLKKDWKG+WQA WNESLIAKTEDSV+ RIPTHWVGTV++ DGKEFTEADE+AI QVL PM CTPIFVPLSIIRGSYLGYCKQILWPAFHNV
Sbjct:   33 PSLLVEMVTTPEEYPLWRTPQPIIVQRNQPHKYIYSLFEGGKFKKWEESSARVIKCDEPSVHQRDEFVGHETDISDYVNPDRQHSGLNTNPKPSSSTSLPRENVEPPPDSVLYLVCFHLPLTLKKDWKGTWQAEWNESLIAKTEDSVSTRIPTHWVGTVASNDGKEFTEADEKAITQVLRPMNCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 245          
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Match: A0A835Z7K4_9STRA (Trehalose 6-phosphate phosphatase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7K4_9STRA)

HSP 1 Score: 219 bits (558), Expect = 2.050e-62
Identity = 113/219 (51.60%), Postives = 143/219 (65.30%), Query Frame = 1
Query:   16 PAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKKWEE-SPARVIKCDEASVHQKDQFVGHDTSDFINQLRQISALDGQSKAG------SCTSLPKRHVEPEPDSVLYLVCFHLPVTLKKDWKGSWQAGWNESLIAKTEDSVADRIPTHWVGTVSNP-DGKEFTEADERAIKQVLLPMKCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 648
            P+  +EMVTTPEEYP+WRT +PIIV R++ H Y+Y+LFEGGKF KWE  S  R ++C    V   D F    +         +S  D   +        SCT +P R       S L+LVCFHLP+TL +   G WQA WNESLIAKTE+SVA++I T WVGT+S   D +EF+  ++  I  +L PM+CTPIFVP +II+GSYLGYCKQILWPAFHN+
Sbjct:   63 PSAALEMVTTPEEYPVWRTRKPIIVPRNEVHTYMYALFEGGKFNKWETLSTPRRLRCTVPLVRVHDTFDDPGSPAHHRSRASLSEADDGIRGLRADTDLSCTPVPARAPH---GSRLFLVCFHLPITLSRGADGRWQALWNESLIAKTENSVANKIETFWVGTISMAGDSREFSAEEQGEITALLKPMRCTPIFVPPAIIQGSYLGYCKQILWPAFHNI 278          
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Match: A0A4D9CZ15_9STRA (CBM20 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CZ15_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.720e-52
Identity = 107/244 (43.85%), Postives = 143/244 (58.61%), Query Frame = 1
Query:    1 MYRFRPAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKKWE--ESPARVIKCDEASVHQKDQFVGHDTSD---------------FINQLRQI-----------SALDGQSKAGSCTSLPKRHVEPEPDSVLYLVCFHLPVTLKKDWKGSWQAGWNESLIAKTEDSVADRIPTHWVGTVSNPDGKEFTEADERAIKQVLLPMKCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 648
            M  F  A+ V +VT+PEEYP+WRT +P++V R  P  Y Y++FEGG FK+WE  E P RVI  D+  V   D       +D                IN++R+            ++LD +    + T   K H  P P S LYLVCFHLPVT+ KD  G+W A WNESLIAKT+ S++  + T WVGTVS  D    +EAD++ I+ +L PM+C PIF+P  +I G Y GYCK+++WP FHNV
Sbjct:   31 MGNFSTAEAVPLVTSPEEYPVWRTFKPLVVPRGIPQAYKYAIFEGGHFKRWEALEIP-RVICVDDFHVELSDVLDEPAEADDAHAPLTPSAMAKREAINRIRRTLSQTVELTEDAASLDARKLLETST---KEH-SPPPGSHLYLVCFHLPVTIAKDAGGAWTAEWNESLIAKTDHSISSDMLTFWVGTVSASD---LSEADKQEIRALLEPMRCHPIFMPREMIEGHYHGYCKKVMWPLFHNV 266          
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Match: A0A7R9YA22_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YA22_9STRA)

HSP 1 Score: 173 bits (438), Expect = 3.850e-46
Identity = 94/230 (40.87%), Postives = 127/230 (55.22%), Query Frame = 1
Query:    7 RFRPAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKKWEESPARVIKCDEASVHQKDQFVGHDTSDFINQLRQISALDGQSKAGSCTSLPKRHVEPE--------------PDSVLYLVCFHLPVTLKKDWKGSWQAGWNESLIAKTEDSVADRIPTHWVGTVS--NPDGKEFTEADERAIKQVLLPMKCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 648
            RF   +   +VTTPEEYP+WRTL P++V R     Y Y +FEGG FK+WE+  A       A V  +  FV     +  + L ++  +       +      R VE E              PD  L LVCFHLP+ L KD  G W A W ESLI+KT+D+++D+I T W+GTVS    DG E   AD+  I+++L PM C P+F+   + R  Y G+CKQ++WPAFHNV
Sbjct:   44 RFVVNEAPALVTTPEEYPVWRTLHPLVVPRGVALTYKYCIFEGGSFKRWEKLSAPGAPG-AAPVSARTIFVDEPLKEVQDSLNRLGDVILPPSPSNLQQQLARAVEEEAVVDPSQLSKQVGIPDH-LTLVCFHLPIELDKDASGKWTARWAESLISKTQDTISDQINTRWMGTVSYQGHDGGELPLADQEEIRELLRPMNCCPVFIGQHLRRQHYKGFCKQVIWPAFHNV 271          
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Match: A0A8K1CLV3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLV3_PYTOL)

HSP 1 Score: 161 bits (408), Expect = 4.190e-42
Identity = 87/254 (34.25%), Postives = 132/254 (51.97%), Query Frame = 1
Query:    1 MYRFRPAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKKWEESPA-RVIKCDEASVHQKDQFVGHDTSDFI---------------NQLRQISALDGQSKAGSCTSLPKRHVE-----------------PEPDSVLYLVCFHLPVTLKKD-WKGSWQAGWN-ESLIAKTEDSVADRIPTHWVGTVS---NPDGKEFTEADERAIKQVLLPMKCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 648
            M +F P + + +VTTPEEYP W T++P+I+ R  PH+Y+Y+LF GG F  WE   + RV+  +   +   + F  +D    +                +L +    +  S  G+ +    +H+                  P+P + LYLVC+HLPV LKK    GSW A WN +SLI++TE S+A+ +   WVG V+     D ++ ++AD++ I  +L  M C P+F+   +    Y GYCK  LWP FHNV
Sbjct:  110 MGQFNPNESMTLVTTPEEYPYWTTIKPLILPRGVPHQYMYALFSGGVFNSWEPIDSERVLVPEGREMVVVEDFGVYDRETVLVPNGELSERAVVFDRKKLTEEHGEEETSTEGALSRTSSQHIRQNKLQSRYKRYTPSNYHPDPQATLYLVCYHLPVRLKKSPVDGSWSAEWNRDSLISRTEGSIAESMKARWVGCVTYQARSDSEDLSDADKQEITDILFKMDCIPVFIDRELAYDHYQGYCKSKLWPMFHNV 363          
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Match: A0A6G0WV75_9STRA (CBM20 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WV75_9STRA)

HSP 1 Score: 152 bits (384), Expect = 6.770e-39
Identity = 85/256 (33.20%), Postives = 124/256 (48.44%), Query Frame = 1
Query:    1 MYRFRPAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKKWEESPARVIKCDEASVHQ-KDQFVGHDTSDFINQL--------------------------------RQISALDGQSKAGSCTSLPKRHVEPE-----PDSVLYLVCFHLPVTLKKDWKGSWQAGWN-ESLIAKTEDSVADRIPTHWVGTVSNP-DGKEFTEADERAIKQVLLPMKCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 648
            M ++ P++ +E+VT+PEEYP+WRT++P+I+ R   HKY+Y++F GG F +WE      I CD   + Q +D  +  D   +  Q                                 R +S    Q           RH   E     PDS L+L+C+HLP+ + K   G+W A WN +SLIA++E S+A+ +   WVG ++    G   +E D   I  VL  M    +F+P  +    Y GYCK  LWP FHNV
Sbjct:   60 MGQYNPSESIELVTSPEEYPIWRTVKPLILPRGIVHKYMYAVFSGGAFARWE-----PIDCDREVIPQGRDMTISEDYGVYDPQSVLQSVPSSKHYIRAAPXXXXXXXXXXESAKLKRTLSQQRFQRTKVKLEPRTSRHAAAEFKPDHPDSTLFLICYHLPIDITKSDDGTWHAAWNKDSLIARSEGSIAESMKVKWVGCITTEYKGMAMSEQDIADISTVLAKMDAFAVFIPPQLSHAHYQGYCKSKLWPMFHNV 310          
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Match: A0A418AYJ5_9STRA (CBM20 domain-containing protein (Fragment) n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AYJ5_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.110e-37
Identity = 97/280 (34.64%), Postives = 137/280 (48.93%), Query Frame = 1
Query:    1 MYRFRPAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKKWEESPARVIKCDEASVHQ-KDQFVGHDTSDF-INQLRQISALDGQ-------------SKAGSCTSLP----------------------KRHVEPE--------------PDSVLYLVCFHLPVTLKKD-WKGSWQAGWN-ESLIAKTEDSVADRIPTHWVG------TVSNPDGKE-----FTEADERAIKQVLLPMKCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 648
            M +++P++ +E+VT+PEEYP+WRT++P+I+ R   HKY+Y++F GG F  WE      I CD   V Q +D  +  D   F +N +   SA                 SKA S +  P                      K  ++P               PDS L+LVC+HLP+ + KD   G W A WN +SLIA++E+S+A+ +   WVG      +VS P G        T+AD  AI  VL  M    +F+P ++    Y GYCK  LWP FHNV
Sbjct:   86 MGQYKPSESIELVTSPEEYPVWRTVKPLILPRGIAHKYMYAVFSGGMFANWE-----PIDCDRHVVPQGRDMTISEDYGTFDLNSVLVPSASSSSVFVRAPASTASSTSKASSPSRQPASADAPVSSLSRSKSLQRFQRNKVKLQPRTASRDTPADFKPSNPDSTLFLVCYHLPIDIAKDPVTGIWTATWNKDSLIARSENSIAESMKVKWVGCITTEVSVSPPGGGRSTVVPMTDADIAAITAVLAAMDAFAVFLPPTLAHRHYQGYCKSKLWPMFHNV 360          
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Match: A0A485LRL7_9STRA (Aste57867_24852 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRL7_9STRA)

HSP 1 Score: 147 bits (372), Expect = 2.780e-37
Identity = 88/256 (34.38%), Postives = 126/256 (49.22%), Query Frame = 1
Query:    1 MYRFRPAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKKWEESPARVIKCDEASVHQ-KDQFVGHDTSDFINQ-LRQISALDGQSKAGSCTSLP---------------------------------KRHVE---PEPDSVLYLVCFHLPVTLKKDWKGSWQAGWN-ESLIAKTEDSVADRIPTHWVGTVSNP-DGKEFTEADERAIKQVLLPMKCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 648
            M ++ P++ +E+VT+P +YP+WRT++P+I+ R   HKYIY++F GG F  WE      I CD   V Q +D  +  D   +  Q + Q +A      A    + P                                 KR+ E     PDS L+LVC+HLP+ + KD +G W A WN +SLIA++E S+A+ +   WVG ++        TEAD   I  VL  M    +F+   +    Y GYCK  LWP FHNV
Sbjct:   85 MGQYNPSESIELVTSPTDYPIWRTVKPLILPRGIVHKYIYAVFSGGVFANWE-----PIDCDREIVPQGRDMTISEDFGVYDAQSVLQSTAPTNPRNAVFVRTTPTAKQPLSGKKEGLKRSMSLQRFQRTKVKLQPRIKRNEEFKPDHPDSTLFLVCYHLPIDISKDEQGKWHAAWNKDSLIARSEHSIAESMHVKWVGCITTEYHHTPMTEADMAEITVVLATMDAFAVFLAPDLSHKHYQGYCKSKLWPMFHNV 335          
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Match: K3WZA0_GLOUD (CBM20 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WZA0_GLOUD)

HSP 1 Score: 147 bits (372), Expect = 2.830e-37
Identity = 91/265 (34.34%), Postives = 137/265 (51.70%), Query Frame = 1
Query:    1 MYRFRPAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKKWE--ESPARVIK-------CDEASVHQKD-QFVG----HDTSDFINQLRQISALDGQSK---AGSCTSLP-----------------------KRHV----EPEPDSVLYLVCFHLPVTLKKD-WKGSWQAGWN-ESLIAKTEDSVADRIPTHWVGTVSNP---DGKEFTEADERAIKQVLLPMKCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 648
            M  F P +   +VTTPE+YP W T++P+I+ R  PH+Y+++LF GG F  WE  ES   ++         +E  V+  D Q V      D S    + ++    D +++   A + T +P                       KR++     P+P + L+LVC+HLPV L K    GSW A WN +SLI+++E S+A+ +   WVG V++    D ++ +E D+R I +VL  M C P+F+   +    Y GYCK  LWP FHNV
Sbjct:  142 MGHFNPNESTTLVTTPEQYPYWTTVKPLILPRGVPHQYMFALFAGGVFSSWEPIESERVLVPEGREMTVLEEFGVYDSDLQLVKTGDVRDRSVEYERRKEPPRTDFEAQEAMATAATDVPSAPPSLSRTASQFFRQTKLQSRYKRYMPSNYRPDPLATLFLVCYHLPVKLTKSPVDGSWSAAWNRDSLISRSEGSIAESMRVRWVGCVTHQARDDLEDLSEVDKREITEVLSQMDCIPVFIDRELAANHYQGYCKNKLWPMFHNV 406          
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Match: A0A1V9ZHG5_9STRA (Trehalose-phosphatase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZHG5_9STRA)

HSP 1 Score: 146 bits (368), Expect = 9.580e-37
Identity = 89/255 (34.90%), Postives = 131/255 (51.37%), Query Frame = 1
Query:    1 MYRFRPAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKKWEE-SPARVIKCDEASVHQKDQFVGHD-------TSDFINQ----LRQI------SAL-------DGQSKAGSCTSLPKRH----------VEPEPDSVLYLVCFHLPVTLKK---DWKGSWQAGWNESLIAKTEDSVADRIPTHWVGTVS-NPDGKEFTEADERAIKQVLLPMKCTPIFVPLSIIRGSYLGYCKQILWPAFHNV 648
            M ++ P++ +E+VTTPEEYP+WRT +P+I+ R   H+Y+Y+LF GG F KWE+    R+I  +   +   + F  +D       TS+  N+    +R+I       AL        G+S+     S  K H           +P+ DS LYL+C+HLP+ L K    W G W     +SLIA++E ++A  +   WVG V+     +  TE D   IK +L  M    +F+   +    Y GYCK  LWP FHNV
Sbjct:   88 MGQYNPSESIELVTTPEEYPIWRTSKPLILPRGIAHRYMYALFLGGAFSKWEQIDQDRIIVPEGREMTIAEDFGTYDPNSVLQKTSEICNRSIVYMRKILTHSAKQALITGKIEKQGESRFRQGASKEKMHPRFKRHASATYKPDADSTLYLICYHLPIHLNKIDGQWHGEWD---KDSLIARSEGTIAQSMNVKWVGCVTLEYQSQPLTEDDVEEIKTLLEAMDAHAVFISPELGADHYQGYCKSKLWPMFHNV 339          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13193.1903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT10_ECTSI5.390e-11881.22Trehalose 6-phosphate synthase, family GT20 / Treh... [more]
A0A835Z7K4_9STRA2.050e-6251.60Trehalose 6-phosphate phosphatase n=1 Tax=Tribonem... [more]
A0A4D9CZ15_9STRA1.720e-5243.85CBM20 domain-containing protein n=2 Tax=Monodopsid... [more]
A0A7R9YA22_9STRA3.850e-4640.87Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8K1CLV3_PYTOL4.190e-4234.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WV75_9STRA6.770e-3933.20CBM20 domain-containing protein n=1 Tax=Aphanomyce... [more]
A0A418AYJ5_9STRA1.110e-3734.64CBM20 domain-containing protein (Fragment) n=2 Tax... [more]
A0A485LRL7_9STRA2.780e-3734.38Aste57867_24852 protein n=1 Tax=Aphanomyces stella... [more]
K3WZA0_GLOUD2.830e-3734.34CBM20 domain-containing protein n=1 Tax=Globispora... [more]
A0A1V9ZHG5_9STRA9.580e-3734.90Trehalose-phosphatase n=1 Tax=Thraustotheca clavat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13193contigS-dermatodea_contig13193:1417..6640 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.4
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog115417.EPrPW00000023274
KEGG rclassRC00005,RC00017,RC00049,RC02748
KEGG koko:K16055
KEGG ReactionR02737,R02778
KEGG Pathwayko00500,ko01100,map00500,map01100
EggNOG free text desc.Trehalose-phosphatase. Source PGD
EggNOG OGs1MFAS@121069,COG1877@1,KOG1050@2759
EC2.4.1.15,3.1.3.12
COG Functional cat.G
CAZyGT20
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTrehalose 6-phosphate synthase, family GT20 / Trehalose 6-phosphate phosphatase
Ec32 orthologEc-24_004390.1
Exons5
Model size648
Cds size648
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13193.1903.1prot_S-dermatodea_contig13193.1903.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13193 1417..6640 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924276.6244476-CDS-S-dermatodea_contig13193:1416..15491622924276.6244476-CDS-S-dermatodea_contig13193:1416..1549Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13193 1417..1549 +
1694079144.2942224-CDS-S-dermatodea_contig13193:1416..15491694079144.2942224-CDS-S-dermatodea_contig13193:1416..1549Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13193 1417..1549 +
1622924276.6338458-CDS-S-dermatodea_contig13193:2997..31561622924276.6338458-CDS-S-dermatodea_contig13193:2997..3156Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13193 2998..3156 +
1694079144.3047168-CDS-S-dermatodea_contig13193:2997..31561694079144.3047168-CDS-S-dermatodea_contig13193:2997..3156Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13193 2998..3156 +
1622924276.6423023-CDS-S-dermatodea_contig13193:3615..37691622924276.6423023-CDS-S-dermatodea_contig13193:3615..3769Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13193 3616..3769 +
1694079144.312793-CDS-S-dermatodea_contig13193:3615..37691694079144.312793-CDS-S-dermatodea_contig13193:3615..3769Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13193 3616..3769 +
1622924276.6523786-CDS-S-dermatodea_contig13193:6003..60971622924276.6523786-CDS-S-dermatodea_contig13193:6003..6097Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13193 6004..6097 +
1694079144.3209257-CDS-S-dermatodea_contig13193:6003..60971694079144.3209257-CDS-S-dermatodea_contig13193:6003..6097Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13193 6004..6097 +
1622924276.664306-CDS-S-dermatodea_contig13193:6532..66401622924276.664306-CDS-S-dermatodea_contig13193:6532..6640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13193 6533..6640 +
1694079144.3290029-CDS-S-dermatodea_contig13193:6532..66401694079144.3290029-CDS-S-dermatodea_contig13193:6532..6640Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13193 6533..6640 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13193.1903.1

>prot_S-dermatodea_contig13193.1903.1 ID=prot_S-dermatodea_contig13193.1903.1|Name=mRNA_S-dermatodea_contig13193.1903.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=216bp
MYRFRPAQLVEMVTTPEEYPLWRTLQPIIVQRHQPHKYIYSLFEGGKFKK
WEESPARVIKCDEASVHQKDQFVGHDTSDFINQLRQISALDGQSKAGSCT
SLPKRHVEPEPDSVLYLVCFHLPVTLKKDWKGSWQAGWNESLIAKTEDSV
ADRIPTHWVGTVSNPDGKEFTEADERAIKQVLLPMKCTPIFVPLSIIRGS
YLGYCKQILWPAFHNV
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mRNA from alignment at S-dermatodea_contig13193:1417..6640+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13193.1903.1 ID=mRNA_S-dermatodea_contig13193.1903.1|Name=mRNA_S-dermatodea_contig13193.1903.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5224bp|location=Sequence derived from alignment at S-dermatodea_contig13193:1417..6640+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTATCGCTTTCGTCCGGCGCAGCTTGTGGAGATGGTGACGACCCCGGA GGAGTACCCACTGTGGCGCACTCTCCAGCCAATCATCGTTCAGCGCCATC AGCCGCACAAGTACATATACAGCCTTTTTGAAGGTATGCATCTCGCGTTC CATCTACCTGTTCAATAGTCAAGTGTTTTTATGCCCATTGTATGCACAAA CGGTATTGTACACAGACGTAACTCTGCTATCAACTGCAGGGCACGTTTGG CGAGTGTGGCCCTCGTGACGATCGCGCTCTTTTCGTCTCAGGACGATCTG CGCGTAGTTTTGGAGCTTTTATCCTTTTGTAGATGCAGTTTTGCCAGGTG GTCACGGCCCGCCCCTGTTCCTCAGTTAGTACCGCCTCTTTACACTGCGC ACCCGTTCCAGCATCTCGGGTTTCCGTCGCAGACCTCTGGCTGTAACCTC CAAGCTTGAGCCTGCCTTGCAACCCACCACTTATTGATACAAGTATGTGT GTACTCCGGCGCGAGTGCTGAAGGAACCCAATGCATTCACGATACACACC CTAGTCAACATGTGCAGGGGGAGATATGGGTTGATGTATCTCTCGTCTCC TCAGACGGCATTCGGACAAGGCCGATCAGTGACATGCGAAGTACACATAC ACACACATACGAAGTACACACACACACACACGCCTCGACACACCCACAAA CACACACTCCTCGAGACGTCCACAAACATGTAACATAGTTTCCTAGGTAA GGGCAACCGCCCCACGCGTAACAGACGCACAATAACGCGCGGAAGAGGCG TGGCGCCCTAGCGCGGTAGCCCCTGTGCTGCGCGCTGCTGGTGCTGGCGT AGGGGGGACGCCTCGATGCAGAAATTCCTCTCTTTGTTGTGAGTGCGACC GAAAATGCGTCCTCGCTGCAGATAATACCTCCCGCCGTACCGCGCCTCGT CGTGTGCCGCGTGCGTGCTTCGGGGCGTGCCCGCATCCGTGGTTTTGTTT TGAGCCGCCTTTCCTTTCTGTTCCCGTCGTTTGGTGGTTTTTCGTTTGGC GGGGGTGAATAAGCGAAACGGTCTGAATGTTAGCTTTTCTTAAGTGATTT TTTTGGAATTGGCGAGTGGAGGGAGTGCTGAATATACCCGATGCGTACGC GACAAACATATGAGGCAACAACCGGGGAAAAGGGGATGAATCGATTCCTC GTGACTTTCGGATAACACCGGTCAGGCGCGTGAGTCACACACACACACAC ACACACACACACACACACACACAGCACCAGGAGGGCTGCCGCACGGGTCC TCCGTTGCGACACGACTTACAGCTAAATGTTAATGTTGGTTTTGATGTGA CGAGACATTGAGAAACCAGAAACCATCAGCGTCGACCGCCTCTGACCGCG ATTCTAGAGCTTTTGCCAGAGCGGCTCACGCTTTTCTCCCAATTACCACT TTTTACTGTACTCTGTAGCCGTAACAATTGCACGCCTAACTTGGTATTGT CGTGGTCGGTGGCTCGGTCACTCTGCTTCCGTTCTTCGGCTGTGGGCGCG ATTTTTGTAACCGTTTTTTTGTAACCGTCAGGGGGCAAATTCAAGAAGTG GGAAGAGTCGCCCGCTCGAGTGATCAAGTGCGACGAGGCGTCGGTGCACC AGAAGGACCAGTTCGTCGGGCACGACACCTCCGACTTCATCAACCAGCTC AGGCAGATCTCGGCTCTCGACGGGCAGTCGAAAGCAGGCTGTGAGTTGCA TCCAAAATGACGATGATGATGATGATGATGATGTCCATGATGATGATAAC GGCCTCACATGTTTTATGTCTAAATCCCGTGCGCCATGGTGACGTCACGA GATCGATGAAGAAACGGAAGCCAAAGACACGAGACACTCGTTAAAACTAC CTGTGATAAGCGGAAACACTGCCGAATAATCGGAGTGTATGAGTAAGTAC GTAATCCTGTATCATTGTTTCGGTAAAACGTCGCCACCTCGCCTCGCCCT CGCGAACACCGCCTTCCTGCACCCCTGTAAAACCCAACGTTGGTTCTGCG AAACCGCTCGCTCGTCACCTGTGCCGTTCCCCTTGCTCCTTTTTTTCACC CGGGGACTTCTTGTTTCTGCGGTTGGCTGGCTACTGTTGGCTTGGCTTGG CGATTGGATTGGATTGATGTCGCCCTCGGCGCACCGCTGTGACCTTCAGC GTGCACGTCTCTTCCGAAACGACACGTGGAGCCCGAACCGGACTCGGTCC TGTATCTGGTATGCTTCCATCTGCCCGTGACTCTGAAGAAGGACTGGAAG GGGAGCTGGCAGGCTGGGTGGAACGAGAGCTTAATCGCTAAGACGGAAGA CAGGTGAGGGTTGGAGGGACGAGCGCGCGGGGGTAACTTTTATTCAACAG CTGGTGTTGTTGCTTTTTTTTGTTGAAGTATAATGTGGTGTGGTGTGGTG TGGTGTGGTAAGTTTTTGTCTTGCCGTGTTGGTTGGTGTGCGAGCACGTG CGATGGCATCGAGGAGCCAGGAGAAAGCTGCCCCCCCCGCAATTATTTTT CGTTCTGGTGGTGTTCAAGGCCCCAATTTCGTATGAAGGGATACATCCCA ATAGTATGATAAGAAGTATAATACGTGGCGCTAGGAGCGCCCCCGAAGAC AGTACAGATTTATAGACACAGGACTACAGTAGCATTGGGGTCAAATCTTT TTGGTAGAAGAAAAAGATGGCCCAATCTAACTCAGTGGAAGCCTACGTTA TATATTTTGCTATGGGGTGCTGTTATAGTACCATCGTACTGTATTCAGCG TTGTTCGCTTAGTGGAAGCCTACATTATATACGATGCTGTGGGTCTTGCT ATAATACAACTGTACTGCCTTCTATTAACACAGTGCTAACTCAGTGGAAT CCGACGTTGTGTATTAGTATTATGTTACGGGGTCCTGCTGTACTCTTATA CTGTGTACTATATTGAAGATGGCTGTCGATTGGGTACGTTGACGTTTTTT TCCGATGGCCAGACATGTCGGTATCCTCGTCGTAGTGATTCGGACTTAGA ACTGCCACTCATTGTTTACCAGTATGTGATATTGAGAAGAACGTCCGGCG AAGTGGTGGAACTTTCGTGAAGCACTACTAAATCTGCCGCTTCGAGTTGA TCGATTCATATATCGGCCCACACTCATATGGGCTTCGCCCCTAGCTTGTT ACCGCTGCACTCTTCAGCGCTCAGCCTTTTGGTGCGACAATATGTGTTTC ATCTATAGGGTAGAAAGTCGTGGCATACTCCAGACACCCGAGTGTCTGGT CCCACGTGAAACGGCCGAGGCCTCTAATAAACTCCAAATCTGAAGATATT GGGGAATGAAAGGGCCGCAACTTCACTAGAGTTGTTCCAGACTTGACTCC TCGGATATCAATTTAGAAATTGTATCTCCCGAGGTACGGATATCAAAGCC TGGCTCTCGCATCTCCGCTCGCTTAGGCCGTGCATACATCGCGGGGCAAC TCCAGCCAACATCCGCTGAAGACAGTAAATATTATATTTATAAACACAGA ACTAGCATTGGGGTCCAACCAGTATTGTTGGTAGAGGAAAAAAGATGGCC CAATCTAACTCAGTGGAACCCTGCGTTAAACACGATGCTATCGCTAGGAG CCCCCCCACCCCTCCCCCCCACCCCCCGCTGCAACCGCCCGTGCGTACAG TAGCTAATTTTGTTTTTTTGTTTACCTCCCGAACTAATCTCGGGTCGAGA GCTCCGCAAAGCCGGGGGTGGTTTAACCGTATGTAAGAACAACAACAATC AACAATTCAACTCTGGTGCTGCCAAAGCCACCTTGCCGAGAAAGGCGGCT TTTGCCGGTTATGTTTCCCCCTTTACGCGCTGCCTGTTTTGCTCCCCCCC CCCTCTGGCCCATCGCTTGCTTGCGTTCCCGTGGTCTGGTGGCGAAGGGC TGCAGGCCTCGCTTTTTCGCCGCAGTTTTTGTTGTTAATTCTAGCATGAA CTGTTGTCTCCCATAGTTCGGGTGTCATGGTGATATGTTTAAGAAAACTG TACGATGATGATGATGATAGTGATGATGAGAATGGTCTCACGCCAACTTT GCACGGCATGTCAATATCCGGCCGTGGCCTGCCACAGTAGTATTCGTAAA TCAAGGGAAGATGTTAAACGGAGCACTTATGATAGTCGTTACAAAAACAC AACCAACAAACGCAAACATACACCAGCAAAACAATAAATAAATCGAAAGG CTATAATTGGGGAAAGCTTTACTCGTTATACTGTATACATTTGTACAAAT ACGTCCTGGTAAATAGGGGCCTAACTAAAGAGAAGTTAAAAAACAACGAA AACTCGCAATCAAGGAAAAGTGTGTTTTTGTCCGTCTTGTCTTTCTTGTT GCTTGGCGGCATTTAGCCACCATTTCGGCAAAGGTCAATGTATCGAGGGA AGCTGCAGTTCCTGTTTTTCGCCCGGCCATTGCTTACATTGTTTTCGGCA AAACACAACGATCGTGGTTACAGGATCAATTAATAGAGGGGGAAGTAATT TGCATGCTTCGTCTTGCCGTTCGTTCTTGCTCGGCAGCGTGGCCGACCGC ATCCCGACGCACTGGGTGGGCACGGTGTCTAATCCGGACGGTAAGGAGTT CACCGAGGCTGACGAGAGGGCCATCAAGCAGGTACGTACCCTGTTCATCG TGCCGTACCGGTGCTGTTATCGGGCAGTAGAAAGAGCCATCACGCAGGTA TCCCAGACCTTGCTGCGATACAGATGCTTTGAGCGAGCGGTAATCGAGTT GTAGTTGTGCTGTAATCGTGCCGTAATTCGCTGTGCGGTTAGGTGGTGCC ACGAGGGAAAAATCGTGAAGGTAGATGGCGCCGTAGGTCGAGCAGTAATC GTGCGTTAATCGTGCGGAATCGGTGCGGTTTAACGGCGGTAACCCGTCGA GGTGTTCGCGCAGTAGTCGAGCGGTACTCGTGCTCTAATCGTGTACGGTA AATCGTGTGGTTACGGCAAATCGTACCTTGACTGTGTTTGTTTCAGGGCG TGCAATTACCTTTTTACCTGGCCGTACGATTCACGATTTATTATATACTG CTGTGCTTTTGAACAGGTACTGCTGCCGATGAAATGCACGCCGATCTTCG TGCCCCTCTCCATCATCCGGGGGAGCTACCTGGGGTACTGTAAGCAGATC CTATGGCCCGCCTTCCACAACGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig13193:1417..6640+

>mRNA_S-dermatodea_contig13193.1903.1 ID=mRNA_S-dermatodea_contig13193.1903.1|Name=mRNA_S-dermatodea_contig13193.1903.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at S-dermatodea_contig13193:1417..6640+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTATCGCTTTCGTCCGGCGCAGCTTGTGGAGATGGTGACGACCCCGGA
GGAGTACCCACTGTGGCGCACTCTCCAGCCAATCATCGTTCAGCGCCATC
AGCCGCACAAGTACATATACAGCCTTTTTGAAGATGTATCGCTTTCGTCC
GGCGCAGCTTGTGGAGATGGTGACGACCCCGGAGGAGTACCCACTGTGGC
GCACTCTCCAGCCAATCATCGTTCAGCGCCATCAGCCGCACAAGTACATA
TACAGCCTTTTTGAAGGGGGCAAATTCAAGAAGTGGGAAGAGTCGCCCGC
TCGAGTGATCAAGTGCGACGAGGCGTCGGTGCACCAGAAGGACCAGTTCG
TCGGGCACGACACCTCCGACTTCATCAACCAGCTCAGGCAGATCTCGGCT
CTCGACGGGCAGTCGAAAGCAGGCTGGGGCAAATTCAAGAAGTGGGAAGA
GTCGCCCGCTCGAGTGATCAAGTGCGACGAGGCGTCGGTGCACCAGAAGG
ACCAGTTCGTCGGGCACGACACCTCCGACTTCATCAACCAGCTCAGGCAG
ATCTCGGCTCTCGACGGGCAGTCGAAAGCAGGCTCGTGCACGTCTCTTCC
GAAACGACACGTGGAGCCCGAACCGGACTCGGTCCTGTATCTGGTATGCT
TCCATCTGCCCGTGACTCTGAAGAAGGACTGGAAGGGGAGCTGGCAGGCT
GGGTGGAACGAGAGCTTAATCGCTAAGACGGAAGACAGCGTGCACGTCTC
TTCCGAAACGACACGTGGAGCCCGAACCGGACTCGGTCCTGTATCTGGTA
TGCTTCCATCTGCCCGTGACTCTGAAGAAGGACTGGAAGGGGAGCTGGCA
GGCTGGGTGGAACGAGAGCTTAATCGCTAAGACGGAAGACAGCGTGGCCG
ACCGCATCCCGACGCACTGGGTGGGCACGGTGTCTAATCCGGACGGTAAG
GAGTTCACCGAGGCTGACGAGAGGGCCATCAAGCAGCGTGGCCGACCGCA
TCCCGACGCACTGGGTGGGCACGGTGTCTAATCCGGACGGTAAGGAGTTC
ACCGAGGCTGACGAGAGGGCCATCAAGCAGGTACTGCTGCCGATGAAATG
CACGCCGATCTTCGTGCCCCTCTCCATCATCCGGGGGAGCTACCTGGGGT
ACTGTAAGCAGATCCTATGGCCCGCCTTCCACAACGTGGTACTGCTGCCG
ATGAAATGCACGCCGATCTTCGTGCCCCTCTCCATCATCCGGGGGAGCTA
CCTGGGGTACTGTAAGCAGATCCTATGGCCCGCCTTCCACAACGTG
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