mRNA_S-dermatodea_contig13168.1895.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig13168.1895.1
Unique NamemRNA_S-dermatodea_contig13168.1895.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig13168.1895.1 vs. uniprot
Match: A0A6H5KPS4_9PHAE (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPS4_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 2.630e-19
Identity = 36/48 (75.00%), Postives = 43/48 (89.58%), Query Frame = 1
Query:   10 QVNVNGLQSDPLFAWLKAASGNPVDIPWNFSKFLVVCGEVVRRYSHEV 153
            +++VNGL S P+FAWLKAASGNP DIPWNF+KFLV+CG  V+RYSHEV
Sbjct:  116 KIDVNGLHSSPIFAWLKAASGNPHDIPWNFTKFLVLCGSTVKRYSHEV 163          
BLAST of mRNA_S-dermatodea_contig13168.1895.1 vs. uniprot
Match: D8LS13_ECTSI (Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LS13_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.930e-14
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   10 QVNVNGLQSDPLFAWLKAASGNPVDIPWNFSKFLVVCGEVVRRYSHEV 153
            +V VNGL+S PLFAWLKAASG P +I WNF+KFLVV G  V RYSHEV
Sbjct:  101 KVEVNGLRSQPLFAWLKAASGVPGNIEWNFTKFLVVGGNHVTRYSHEV 148          
BLAST of mRNA_S-dermatodea_contig13168.1895.1 vs. uniprot
Match: A0A7G2N1N5_LACSP (Glutathione peroxidase n=2 Tax=Lactococcus TaxID=1357 RepID=A0A7G2N1N5_LACSP)

HSP 1 Score: 50.8 bits (120), Expect = 4.510e-6
Identity = 25/50 (50.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    1 RFRQVNVNGLQSDPLFAWLKAASGNPV--DIPWNFSKFLV-VCGEVVRRY 141
            +F +++VNG++ +PLF +LKAA    +  DI WNF+KFLV   G+VV+RY
Sbjct:   91 QFAKIDVNGVEEEPLFTYLKAAQPGKLTSDIKWNFTKFLVDKTGQVVKRY 140          
BLAST of mRNA_S-dermatodea_contig13168.1895.1 vs. uniprot
Match: UPI0009A7C027 (glutathione peroxidase n=1 Tax=Mesobacillus jeotgali TaxID=129985 RepID=UPI0009A7C027)

HSP 1 Score: 50.4 bits (119), Expect = 6.420e-6
Identity = 27/66 (40.91%), Postives = 41/66 (62.12%), Query Frame = 1
Query:    4 FRQVNVNGLQSDPLFAWLKAASGNPV--DIPWNFSKFLVVC-GEVVRRYSHEVQCKAVYRKAKNAL 192
            F +++VNG  +DPLFA+LK   G  +  DI WNF+KFL+   G+VV+RY+   + + +    K  L
Sbjct:   93 FAKIDVNGPNTDPLFAFLKEQKGGVLTKDIKWNFTKFLIDRNGQVVKRYAPTTEPEKIKNDIKELL 158          
BLAST of mRNA_S-dermatodea_contig13168.1895.1 vs. uniprot
Match: A0A835YHD0_9STRA (Glutathione peroxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHD0_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 1.530e-5
Identity = 28/61 (45.90%), Postives = 36/61 (59.02%), Query Frame = 1
Query:   10 QVNVNGLQSDPLFAWLKAASGNPVDIPWNFSKFLVVCGEVVRRYSHEVQCKAVYRKAKNAL 192
            +V VNG   DPLF +LK A+G+   + WNFSKFLVV G   + YSH     A+     +AL
Sbjct:  123 KVEVNGDGEDPLFTFLKEATGSG-PLKWNFSKFLVVNGVPRKHYSHSTSPSAIEDDIVDAL 182          
BLAST of mRNA_S-dermatodea_contig13168.1895.1 vs. uniprot
Match: A0A139AAB0_GONPJ (Glutathione peroxidase n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AAB0_GONPJ)

HSP 1 Score: 49.3 bits (116), Expect = 1.670e-5
Identity = 26/47 (55.32%), Postives = 34/47 (72.34%), Query Frame = 1
Query:    7 RQVNVNGLQSDPLFAWLKAASGNPVDIPWNFSKFLV-VCGEVVRRYS 144
            +++ VNG  +DPL+A+LKAA G   DI WNF KFLV   G+VV RY+
Sbjct:   93 KKIEVNGANTDPLYAFLKAAKGGG-DIKWNFEKFLVGKDGKVVDRYN 138          
BLAST of mRNA_S-dermatodea_contig13168.1895.1 vs. uniprot
Match: UPI00119D3EB7 (glutathione peroxidase n=2 Tax=Bacillaceae TaxID=186817 RepID=UPI00119D3EB7)

HSP 1 Score: 48.1 bits (113), Expect = 4.860e-5
Identity = 25/50 (50.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    4 FRQVNVNGLQSDPLFAWLKAASGNPV--DIPWNFSKFLVVC-GEVVRRYS 144
            + +++VNG  +DPLFA+LK   G  +  DI WNF+KFLV   G VV+RY+
Sbjct:   93 YAKIDVNGANTDPLFAFLKEQKGGVLTKDIKWNFTKFLVDRDGHVVKRYA 142          
BLAST of mRNA_S-dermatodea_contig13168.1895.1 vs. uniprot
Match: A0A5J5KWD9_9MICC (Glutathione peroxidase n=1 Tax=Kocuria coralli TaxID=1461025 RepID=A0A5J5KWD9_9MICC)

HSP 1 Score: 48.1 bits (113), Expect = 4.990e-5
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1
Query:    4 FRQVNVNGLQSDPLFAWLKAASG--NPVDIPWNFSKFLV-VCGEVVRRY 141
            +++V+VNGL + PL+AWLK+     N  DI WNF+KFLV   G VV R+
Sbjct:   93 YKKVDVNGLHTHPLWAWLKSEKPGENGADIEWNFTKFLVDKSGTVVARF 141          
BLAST of mRNA_S-dermatodea_contig13168.1895.1 vs. uniprot
Match: F7NW71_9GAMM (Glutathione peroxidase n=7 Tax=Chromatiaceae TaxID=1046 RepID=F7NW71_9GAMM)

HSP 1 Score: 47.4 bits (111), Expect = 9.880e-5
Identity = 27/67 (40.30%), Postives = 41/67 (61.19%), Query Frame = 1
Query:    4 FRQVNVNGLQSDPLFAWLKAASGNPVD---IPWNFSKFLVVC-GEVVRRYSHEVQCKAVYRKAKNAL 192
            F +V VNGL SDPLF +LK  +   +    I WNF+KFLV   G+VV+RY+   +  ++++  +  L
Sbjct:   93 FGKVQVNGLDSDPLFEYLKDQARGLMKTRAIKWNFTKFLVNREGDVVKRYAPRTKPSSLHQSVEEVL 159          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig13168.1895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KPS4_9PHAE2.630e-1975.00Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
D8LS13_ECTSI1.930e-1472.92Glutathione peroxidase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7G2N1N5_LACSP4.510e-650.00Glutathione peroxidase n=2 Tax=Lactococcus TaxID=1... [more]
UPI0009A7C0276.420e-640.91glutathione peroxidase n=1 Tax=Mesobacillus jeotga... [more]
A0A835YHD0_9STRA1.530e-545.90Glutathione peroxidase n=1 Tax=Tribonema minus Tax... [more]
A0A139AAB0_GONPJ1.670e-555.32Glutathione peroxidase n=1 Tax=Gonapodya prolifera... [more]
UPI00119D3EB74.860e-550.00glutathione peroxidase n=2 Tax=Bacillaceae TaxID=1... [more]
A0A5J5KWD9_9MICC4.990e-551.02Glutathione peroxidase n=1 Tax=Kocuria coralli Tax... [more]
F7NW71_9GAMM9.880e-540.30Glutathione peroxidase n=7 Tax=Chromatiaceae TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig13168contigS-dermatodea_contig13168:3783..3992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.6
Seed ortholog evalue4.2e-11
Seed eggNOG ortholog2880.D8LS13
KEGG rclassRC00011,RC00982
KEGG koko:K00432,ko:K05361
KEGG ReactionR00274,R03167,R07034,R07035
KEGG Pathwayko00480,ko00590,ko04216,ko04918,map00480,map00590,map04216,map04918
EggNOG free text desc.glutathione peroxidase activity
EggNOG OGsCOG0386@1,KOG1651@2759
EC1.11.1.12,1.11.1.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGlutathione peroxidase
Ec32 orthologEc-08_001740.1
Exons1
Model size210
Cds size210
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924276.003555-CDS-S-dermatodea_contig13168:3782..39921622924276.003555-CDS-S-dermatodea_contig13168:3782..3992Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13168 3783..3992 +
1694079143.8579364-CDS-S-dermatodea_contig13168:3782..39921694079143.8579364-CDS-S-dermatodea_contig13168:3782..3992Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig13168 3783..3992 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig13168.1895.1prot_S-dermatodea_contig13168.1895.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig13168 3783..3992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig13168.1895.1

>prot_S-dermatodea_contig13168.1895.1 ID=prot_S-dermatodea_contig13168.1895.1|Name=mRNA_S-dermatodea_contig13168.1895.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=70bp
RFRQVNVNGLQSDPLFAWLKAASGNPVDIPWNFSKFLVVCGEVVRRYSHE
VQCKAVYRKAKNALYLYGC*
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mRNA from alignment at S-dermatodea_contig13168:3783..3992+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig13168.1895.1 ID=mRNA_S-dermatodea_contig13168.1895.1|Name=mRNA_S-dermatodea_contig13168.1895.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at S-dermatodea_contig13168:3783..3992+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTTTCCGACAGGTGAACGTGAATGGACTCCAGTCTGACCCTCTGTTCGC TTGGCTCAAGGCGGCCTCGGGTAACCCGGTTGACATCCCGTGGAATTTCA GCAAGTTCCTGGTAGTCTGCGGAGAGGTGGTCAGAAGATACTCGCACGAG GTACAATGCAAAGCAGTGTATAGGAAGGCCAAAAACGCTCTATACCTGTA CGGGTGCTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig13168:3783..3992+

>mRNA_S-dermatodea_contig13168.1895.1 ID=mRNA_S-dermatodea_contig13168.1895.1|Name=mRNA_S-dermatodea_contig13168.1895.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at S-dermatodea_contig13168:3783..3992+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGTTTCCGACAGGTGAACGTGAATGGACTCCAGTCTGACCCTCTGTTCGC
TTGGCTCAAGGCGGCCTCGGGTAACCCGGTTGACATCCCGTGGAATTTCA
GCAAGTTCCTGGTAGTCTGCGGAGAGGTGGTCAGAAGATACTCGCACGAG
GTACAATGCAAAGCAGTGTATAGGAAGGCCAAAAACGCTCTATACCTGTA
CGGGTGCTGACGTTTCCGACAGGTGAACGTGAATGGACTCCAGTCTGACC
CTCTGTTCGCTTGGCTCAAGGCGGCCTCGGGTAACCCGGTTGACATCCCG
TGGAATTTCAGCAAGTTCCTGGTAGTCTGCGGAGAGGTGGTCAGAAGATA
CTCGCACGAGGTACAATGCAAAGCAGTGTATAGGAAGGCCAAAAACGCTC
TATACCTGTACGGGTGCTGA
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