mRNA_S-dermatodea_contig1314.1882.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1314.1882.1
Unique NamemRNA_S-dermatodea_contig1314.1882.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1314.1882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1314contigS-dermatodea_contig1314:10105..11951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size486
Cds size486
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1314.1882.1prot_S-dermatodea_contig1314.1882.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1314 10105..11951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924275.1602767-CDS-S-dermatodea_contig1314:10104..102481622924275.1602767-CDS-S-dermatodea_contig1314:10104..10248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1314 10105..10248 +
1694079143.3020358-CDS-S-dermatodea_contig1314:10104..102481694079143.3020358-CDS-S-dermatodea_contig1314:10104..10248Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1314 10105..10248 +
1622924275.1717699-CDS-S-dermatodea_contig1314:11113..113811622924275.1717699-CDS-S-dermatodea_contig1314:11113..11381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1314 11114..11381 +
1694079143.3098636-CDS-S-dermatodea_contig1314:11113..113811694079143.3098636-CDS-S-dermatodea_contig1314:11113..11381Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1314 11114..11381 +
1622924275.1831496-CDS-S-dermatodea_contig1314:11877..119511622924275.1831496-CDS-S-dermatodea_contig1314:11877..11951Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1314 11878..11951 +
1694079143.3194935-CDS-S-dermatodea_contig1314:11877..119511694079143.3194935-CDS-S-dermatodea_contig1314:11877..11951Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1314 11878..11951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1314.1882.1

>prot_S-dermatodea_contig1314.1882.1 ID=prot_S-dermatodea_contig1314.1882.1|Name=mRNA_S-dermatodea_contig1314.1882.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=162bp
IQLDDTRSEGVEDGAGTETECDDPDSAYVNAMEEIWAEAEAWVDAEAQAE
EELWARLPTDLPCLSESEDVVSDVEEACRPNARARGTGACEGDKRNAHEE
LEIEIPVEDDAEEEPGDDDFEEEEEGRSPQRGGLGSEDAGCGSLSSWYRA
EHHPGLGYEDDE
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mRNA from alignment at S-dermatodea_contig1314:10105..11951+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1314.1882.1 ID=mRNA_S-dermatodea_contig1314.1882.1|Name=mRNA_S-dermatodea_contig1314.1882.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1847bp|location=Sequence derived from alignment at S-dermatodea_contig1314:10105..11951+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTCAGCTGGACGATACTCGGAGTGAAGGCGTCGAAGATGGAGCAGGAAC
GGAGACCGAGTGCGACGATCCAGATTCCGCGTACGTTAACGCGATGGAAG
AGATCTGGGCCGAAGCAGAGGCTTGGGTGGATGCGGAGGCTCAGGTAAGG
TTCCAGTTCTTTAGCGAGAGAGGAGGAATGAACCCTTTGCATTAATCTCT
GTATTGTGGAGCAACTGGGTGGCGTCGCCGAGCATGCGAAGTGTTGCCGG
GCGGTCTCTTTGCAGAGGACGCGCGATCGCAAGAACGGAGTGCATTGTAG
GGAAGAAAGAATCCCCCTAGCGACAATTGGGTAGCTGCCGTCCAAACATT
ATTATAAAAAATGAGGTACAGCCGCTGTAATTCGACCGCCATACGGAACG
TTTTCCTCGCAGTTGCGTGCGGGCAGGCACTGGTGCCTAGACCTGCTTCG
CAAAACTTTTAGGAGCTAAAAGCTGAGATTGTGGAATATTTTCAGGGCGG
GTGTTTTCAAGCAAATGGGGGGAAGCGATATTCCAGAGAACGGCAACGCC
GCGGCGTTGCGGAGCCACAGTCGCTTGTGTAGTTTCAGGGTTAAAGCAAT
AGCCCGCCAATATATTGGCGAAATATCAATTACCGCCACTGATAGAAAAT
GCCGCCAATAGGTTTTGAGGGGCCGCCAGTAAATGCGCCGGAGGCGCCGA
AAAATTGGCGGGCCCTTTTGGGCGCCGCAGGCGCCCGTTTCTTTTCGCTG
AAGGCGAAACAAGTTATTGTGGGTGTCAGACCCATTTAACCATGTCGGGA
CTAAAATGCTGAAATGCGCCTGCGGCGCTATTTAATGCCCTGATAGGCAG
TACCCAGGTGCCGCATAATTGCATATTCAGTTTGTATGGGAGTAGATGCG
ATGTGGTTTCCAGAGTACCATGGCCGCGCAACATCTACTACCGCATGAAA
GCCTCGAACATTCGCCGCGCCCTTATTGTTCCCCGCCCCTTCTTCCTGCG
TTGCTCCAGGCCGAGGAGGAGTTGTGGGCAAGACTACCCACAGACCTGCC
TTGCCTCTCCGAATCGGAAGACGTCGTATCTGATGTCGAGGAAGCGTGTC
GCCCGAACGCACGCGCGCGGGGCACGGGGGCGTGTGAAGGTGACAAGCGA
AATGCACATGAGGAGCTGGAGATCGAGATACCCGTCGAGGACGATGCGGA
AGAGGAACCGGGGGACGACGATTTTGAGGAGGAAGAAGAGGGACGGAGTC
CACAGAGGGGAGGGCTCGGATCCGAAGGTGGGGGCTGTAGGGGAACCGTT
TTGAGTATTCCACATGCCATCAGGAAACCTCGTCGTATCCCGCACCCATG
CAACCACAGACATGCACTTCACCCTTTCGGAGCTGAGGTCGTTTTCGGGT
CCACCCACCTGCACCGTGTTTCACATCGAACAGTGCCCAAACCGTGGCTT
TCCCCTTTCCGTACATACTGGCGGTGGCAACGTGAACCCTGCCGCGAGTT
AGCTAGCATGCACGCACGTGGTGCTAGCATGTGTGAGCACTCTACCGCAC
TGTACCCGCCGTAACGAAGCTCCGCCCAAACAGATTCAGTGCCAAGAGGG
CTAACGAACGGAGTGTGCCCATTGCTACGTCGCCCCAAGCGTACCCAGGC
CGTCCATGCGAGAATGTGATGTTCGCGTGGTTCGGCCCGGGAGATTATTT
GTGGTAGTCCCCTCCACCCTCCGCTTTCCGCCTACTTGCGCTTCATCCCT
CGCGGCGCCACTTTGCGCCGCAGACGCAGGTTGTGGTTCTCTCAGCAGCT
GGTACCGCGCGGAGCACCATCCGGGGTTGGGGTACGAGGACGACGAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1314:10105..11951+

>mRNA_S-dermatodea_contig1314.1882.1 ID=mRNA_S-dermatodea_contig1314.1882.1|Name=mRNA_S-dermatodea_contig1314.1882.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at S-dermatodea_contig1314:10105..11951+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATTCAGCTGGACGATACTCGGAGTGAAGGCGTCGAAGATGGAGCAGGAAC
GGAGACCGAGTGCGACGATCCAGATTCCGCGTACGTTAACGCGATGGAAG
AGATCTGGGCCGAAGCAGAGGCTTGGGTGGATGCGGAGGCTCAGATTCAG
CTGGACGATACTCGGAGTGAAGGCGTCGAAGATGGAGCAGGAACGGAGAC
CGAGTGCGACGATCCAGATTCCGCGTACGTTAACGCGATGGAAGAGATCT
GGGCCGAAGCAGAGGCTTGGGTGGATGCGGAGGCTCAGGCCGAGGAGGAG
TTGTGGGCAAGACTACCCACAGACCTGCCTTGCCTCTCCGAATCGGAAGA
CGTCGTATCTGATGTCGAGGAAGCGTGTCGCCCGAACGCACGCGCGCGGG
GCACGGGGGCGTGTGAAGGTGACAAGCGAAATGCACATGAGGAGCTGGAG
ATCGAGATACCCGTCGAGGACGATGCGGAAGAGGAACCGGGGGACGACGA
TTTTGAGGAGGAAGAAGAGGGACGGAGTCCACAGAGGGGAGGGCTCGGAT
CCGAAGGCCGAGGAGGAGTTGTGGGCAAGACTACCCACAGACCTGCCTTG
CCTCTCCGAATCGGAAGACGTCGTATCTGATGTCGAGGAAGCGTGTCGCC
CGAACGCACGCGCGCGGGGCACGGGGGCGTGTGAAGGTGACAAGCGAAAT
GCACATGAGGAGCTGGAGATCGAGATACCCGTCGAGGACGATGCGGAAGA
GGAACCGGGGGACGACGATTTTGAGGAGGAAGAAGAGGGACGGAGTCCAC
AGAGGGGAGGGCTCGGATCCGAAGACGCAGGTTGTGGTTCTCTCAGCAGC
TGGTACCGCGCGGAGCACCATCCGGGGTTGGGGTACGAGGACGACGAGAC
GCAGGTTGTGGTTCTCTCAGCAGCTGGTACCGCGCGGAGCACCATCCGGG
GTTGGGGTACGAGGACGACGAG
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